Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_030919.1 Length=42418 Score E Sequences producing significant alignments: (Bits) Value seq6760 279 1e-70 seq725 259 1e-64 >seq6760 Length=71796 Score = 279 bits (308), Expect = 1e-70 Identities = 360/497 (72%), Gaps = 0/497 (0%) Strand=Plus/Plus Query 1786 TGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAAT 1845 |||||||| || || ||||| || || || || || || || | || || ||||| | Sbjct 16337 TGTTTGGTCTCGATATAAATCCTTCCGATGTACTCACCTAGCACGCCAATACCTATTAGC 16396 Query 1846 TGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTT 1905 || | ||||| |||||||||| |||||| | | |||||| || ||| |||| || Sbjct 16397 TGGATTCCACCGAGGAAAAGAATAGAAACCAAGATAGACGGATAACCATGAACGGGGTTG 16456 Query 1906 CCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACCTGCAATA 1965 ||||| || | | ||||||||||| || ||||||| ||| |||| ||| || | | Sbjct 16457 CCAAAAATGAGGGTGTCAATAATCATATATACACCGTAGGCGAAAGACAGACCGGCCACA 16516 Query 1966 AACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCCTCC 2025 || | || || || ||||| || || || ||||| |||||||| || ||||| || || Sbjct 16517 AAAAGACCTATATACGTCCACATTCGCAGTGGAAAAGTTGAGAACGATGTTATGCCTTCG 16576 Query 2026 AGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCGTTCGGCA 2085 || || |||||||| | |||||| || || ||||| | |||||| |||||||| | Sbjct 16577 AGAGCAAGGTTCCACAGTTTCCAACCATTAAATTTTGTCGAACCGGCAACGCGTTCATCT 16636 Query 2086 CGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTTCATAAAC 2145 |||| ||||| ||||| || || || || |||||| || || || ||||| || Sbjct 16637 CGGGTATATTCGACAACTTCAGTGCGACCACCGACCCAAGACAGAACCCCTTTCATGAAT 16696 Query 2146 AAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAG 2205 ||||| ||||| || | || ||||| || || || || || |||||||| || Sbjct 16697 AAGTTTCGTTCAGGGAGCAACTTAATGTTTTCTACGACAGCGCGAGACATTAACCTGAAA 16756 Query 2206 TCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATAAAACCAC 2265 |||||||| ||||| || || || || |||||||| | || || ||||||||||||||| Sbjct 16757 TCGCCAACGTTTTCCTCAATCTTAGGCTTGCTGATCATGTTATGGAGCTTATAAAACCAC 16816 Query 2266 TCAGCTGTCTTACGCTT 2282 ||||| | |||||||| Sbjct 16817 TCAGCGCTTTTACGCTT 16833 >seq725 Length=236385 Score = 259 bits (286), Expect = 1e-64 Identities = 553/821 (67%), Gaps = 29/821 (4%) Strand=Plus/Plus Query 14638 CGTCTGAGGAACGGAGAAGAGTCCGATACCCTGAAGACCGGAATCGAAGAGCTTGACGCT 14697 ||||| | ||||| || ||||| || || || || ||||| || ||||| |||| Sbjct 188784 CGTCTTAAAAACGGTGAGGAGTCGGACACGCTTAAAACCGGCATACCTGAGCTGGACGAA 188843 Query 14698 ATCACCGGAGGGATGAACGCAGAAGACCTTGTGATTATTGCTGCTCGTCCAGGTATGGGT 14757 || || || || ||||| || || || | || | |||||||| || |||||||| Sbjct 188844 ATTACAGGCGGACTGAACAACGAGGATCTGATCATCGTAGCTGCTCGCCCTGGTATGGGG 188903 Query 14758 AAAACCGAACTGGCGCTGAAGATAGCCGAAGGCGTGGCAAGTCGTGTTATTCCTGGTTCT 14817 |||||||| | || |||| | || ||||| || || || ||||| || || Sbjct 188904 AAAACCGAGTTTGCTCTGACCGTGGCTGAAGGTGTTGCGGAAAGTACTATTC--GGATC- 188960 Query 14818 GGCG---------TCCGGCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAG 14868 |||| | | |||||| ||| |||||||| |||||||||||||| ||| Sbjct 188961 GGCGATGAGGTGTTGCCGCGCGGCGTGCTGATTTTCAGCATGGAAATGAGCGCTCAGCAG 189020 Query 14869 GTTGTTGAGAGAGGGATTGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCG 14928 || | || | | | || ||||| || ||| |||| || ||||| || || Sbjct 189021 GTCATAGAACGCCAGTTGGCTGGCGCCTCAAACATGCCGGTGTCTGCCCTGCGCAAACCT 189080 Query 14929 TCACGTATGGACGATGAAGGATGGGGCGAGAGTTGCAAGCGGGATGAAG----TTGCTGG 14984 ||||||||| ||||||||| |||| | | | | | || || ||| | |||| Sbjct 189081 TCACGTATGAACGATGAAGACTGGG-CACGCATATCGATGGGCATTAAGCGTTTATCTGG 189139 Query 14985 CAGATCTGGATGTGTGGGTAGTTGACGCATCGCGTTTATCTGTCGAAGAAATCAGGTCCA 15044 | ||| | |||||||| || || || ||| | | | || | ||| | | | Sbjct 189140 C----CTGCAGGTGTGGGTTGTCGATGCGTCGAAACTGACCATTGAGCAGATCCGCGCGA 189195 Query 15045 TTTCCGAACGCCACAAGCAGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCG 15104 || | ||| | ||||| | | | | || ||||| || || || || || || || | Sbjct 189196 TTGCGGAAAGGCACAAACGGAAATACCCAAATCTATCTCTCATCCTGTGCGATTACCTTG 189255 Query 15105 GGCTAATTGAGAAACCAAAAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTA 15164 | || || || || || || ||||| || ||||| || || || || |||||||| Sbjct 189256 GCCTGATCGAAAAGCCGCGTGCTGAACGAAACGACCTGGCGATCGCCCACATCTCCGGCG 189315 Query 15165 GCCTGAAAGCGATGGCGAAAGACCTGAAAACTCCAGTTATCTCATTAAGCCAGCTCTCCC 15224 || ||||| |||||||| |||||||| || ||||| || ||| | || ||||| |||| Sbjct 189316 GCATGAAACGCATGGCGAAGGACCTGAAGACGCCAGTGATGTCACTTAGTCAGCTGTCCC 189375 Query 15225 GCGATGTTGAGAAGCGGCCAAAC------AAGCGCCCGACAAACGCAGATTTGCGTGATT 15278 |||| || |||||||| ||||| || || ||| ||| | || |||| || Sbjct 189376 GCGACGTGGAGAAGCGACCAAAGGGCCAGAAACGGCCGGTTAACTCTGACCTGCGCGACG 189435 Query 15279 CAGGAAGCATTGAACAGGACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATG 15338 || ||||| || |||||||| ||| || ||||| || || |||| ||| |||| Sbjct 189436 GGGGGAGCATCGAGCAGGACGCCGACGGGATTTATATGCTGTACCGCGAAGGGGTGTATG 189495 Query 15339 A-CGAGAACAGTAGCGCCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGC 15397 | | ||| || |||||||| || ||||||||||||||||| || ||||| ||||| Sbjct 189496 AACCCGAA-AGCCCTGCCGCGCCGTTCGCTGAAATCATCGTGACCAAGAACCGATTTGGT 189554 Query 15398 TCGCTTGGTACGGTTTACCAGCGGTTCTGCAACGGACACTT 15438 ||| ||||| |||||||||| |||| ||||| ||||| Sbjct 189555 GAGCTCGGTACCGTTTACCAGCAGTTCAAAAACGGGCACTT 189595 Score = 239 bits (264), Expect = 1e-58 Identities = 485/708 (69%), Gaps = 13/708 (2%) Strand=Plus/Plus Query 3948 CATTCATCAATCAACCTTTTTGCCTCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTC 4007 |||||||||| || | || || || | || || ||||| | || ||||||||||| Sbjct 173927 CATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTT 173986 Query 4008 GGCTGAGGAACTTTGATGATCGGAGCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCC 4067 | ||| || ||||| || | || || || |||||| ||||| || ||||| || || Sbjct 173987 GCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCG 174046 Query 4068 CGGAGGAGTGCCTTAATGAATGAAAGGTGAGTTGCTTTTGTGGCTACTGCTGCCGGCTTA 4127 || || || | ||| || | | ||||| |||| || |||||| ||||| | ||| Sbjct 174047 CGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTG-TGCTGAC--CTTC 174103 Query 4128 -GGCTTGAATACTGGAG-GCTGCT-TCCCATTCTTCCTGCAAGCTTCATCCATT-AACTT 4183 ||| ||||| | ||| | |||| ||||| |||| | || ||| Sbjct 174104 TGGCGCTCATACTTTGGCGCTTCGATCCCTCTCTTCGC-CAAGGACTGTGAATGCAACCG 174162 Query 4184 CCAGTTTTCCTCATGCCGCCGATTAGTCATCTTCTGGATGGCGGAGTAAATCTTCGTCTC 4243 ||||||| | ||| || ||| ||| || ||| || | ||| || || | || Sbjct 174163 ATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGATCGCCGTGTAGATTTTGGCTTC 174222 Query 4244 GGTAATATCCTTCAACTGCATCCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTT 4303 ||||||||||||||||| || |||| |||||||| ||||||||||| ||||| || || Sbjct 174223 GGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTTTT 174282 Query 4304 GTCATCATCCAGCGACTTCTTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCTCCTC 4363 |||||||||||| || ||||| | ||| || || |||||||| | ||||||||| || Sbjct 174283 GTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCTTC 174342 Query 4364 AAAAGTCATGCCAGGCGTCTCTCCTAATTTATTTACCCTCCATGCTTCGGCCTTCAGCTT 4423 |||||| | | |||| || || | | || | ||| || | || || Sbjct 174343 AAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTTTT 174402 Query 4424 GTCATGAAGCT-CTGTGGCCTGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTT 4482 ||| || |||| |||| |||| ||| |||| | |||||||||||| | |||| ||||| Sbjct 174403 GTCGTGCAGCTCCTGT-GCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCTTT 174461 Query 4483 TGCCGTTCGGCAATGTGAAACTGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTT 4542 ||| ||||| | ||| || ||||||||| | | |||||| ||||| | ||||| | Sbjct 174462 GCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGACATGT 174521 Query 4543 CAGTTCCTCTGTTATGTCATCACCCGCGCTCACTTGGACAGTATGCAGCGGAGATTGAAG 4602 |||||| ||| |||||| | ||||| |||||| | | ||| | || Sbjct 174522 TTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTATTCAG 174578 Query 4603 TGCCGCAACGCAGGCTTGTCGTGTGGTGAGGTAAGGGGATTTAGGTTT 4650 ||| |||| || ||||| || ||| || ||||||||| || ||||| Sbjct 174579 TGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTT 174626 Score = 158 bits (174), Expect = 3e-34 Identities = 152/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 3410 GTGGGACATATTTGGGACAGAAGTACCAAAAATCGAGTCAATTTGTCGAGCATGTTCAGT 3469 |||||||| ||||||||||||| |||||||| | ||| || || || || || || Sbjct 175480 GTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGT 175539 Query 3470 CAGGTGATTTGGTGCCAGATGAGCATATCGGCGAACCATTTCGATAGACTCCCAGCCACC 3529 | ||||| || |||||||| || ||||| || ||||| ||||| ||||||||||| || Sbjct 175540 TAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCGCC 175599 Query 3530 CATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAACTTGCCCACGTGTG 3589 ||||||||| | || || | ||| || || ||||||| | ||| |||||||| ||||| Sbjct 175600 CATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTG 175659 Query 3590 CCTCAGGTCATGAAA 3604 |||||||| ||||| Sbjct 175660 TCTCAGGTCGTGAAA 175674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135505146973040