Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq14927 118 2e-22 >seq14927 Length=58641 Score = 118 bits (130), Expect = 2e-22 Identities = 459/706 (65%), Gaps = 38/706 (5%) Strand=Plus/Minus Query 12486 GCAGCGCTCCAGGTCGGCCAAGGCGAATGCAGCCTGGGTGCT-GTCGATGAACTTGCACA 12544 |||||| | ||| ||||| || | ||| | | | | || | ||| | |||| ||||| Sbjct 43625 GCAGCGTTGCAGCTCGGCGAACGGGAACACGGAC-GCCTGATCGTCAACAAACTCGCACA 43567 Query 12545 TGAACAGCTGTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACA 12604 ||||||| | ||| ||| || || |||| | | ||| || | || ||||| Sbjct 43566 TGAACAGATTGCGGAAATCCTCCGCGCTGTTCTCCTGTTTCAGCGTGTCGATGTTGAACA 43507 Query 12605 GGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCG 12664 |||||||||| ||||| | || || | ||| |||| || | |||||||| ||||| Sbjct 43506 GGTTGCAGCCACCGGCTAACGCATCCTCAATGGTGACGATTTGCCGCCACTGTCCGTCGC 43447 Query 12665 GGCACAACG-------CGCC--GGCGTGGAT--CTGCGCTTC-GCTGGGCCACGGCCCGG 12712 ||| | | |||| |||||| || ||| | | ||| | | | | Sbjct 43446 CGCAAAGCTGCCCTTTCGCCAGGGCGTG-ATGGCTGATATCCAGCTCAATCCTGTCATTG 43388 Query 12713 CCTTCTTTCCGCGCTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTGGT 12772 | |||| ||| | | ||||| ||| || || | |||| ||||||| || || Sbjct 43387 CGATCTTCCCGTCCCT--TGTTG---AACAGTTCTCCTGACCAGAACGGATACGCGCCGT 43333 Query 12773 GCGTTACCGCGCTG--GGCGTGGAGAAGTAGGTCAGGCGCCACTTTGCATGCGAGGCCAT 12830 |||| | | |||| || |||||||| ||||| |||| | | | ||||| ||||| Sbjct 43332 GCGTCA--GTGCTGACGGGGTGGAGAAATAGGTGGTGCGCAGATGTTCCTGCGACGCCAT 43275 Query 12831 CGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTA 12890 ||||||| ||| | |||||||||||||||| |||||||| || | |||||| | ||| Sbjct 43274 GCCGCTGGCAACCTTGCGCAGCTTCTGGAAATTCGGGATCCAAAAGATTTCGTCCACGTA 43215 Query 12891 GACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTGTTCGT-CGAGAGAAACCGCAGTTCCG 12949 | || ||| | | ||| || || |||||| ||| || | ||||| ||| | | Sbjct 43214 CAGGTCGCCATTATGGCTTTGGGCGGTGTTGGAGTTGGTGCCTAAGAAA-ATCAGCTTTG 43156 Query 12950 CCCACGGCTTGCCGTCTTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGAACC 13009 | ||||| |||| | | || || | || | |||||| | ||| |||| Sbjct 43155 C---------GCCGTTGTTGCCGATCACAATCGGGTCACCCGTCAGCTCAACATC-AACC 43106 Query 13010 ATTGCGCGGCGAAGGCGACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCTCGCGG 13069 | ||| ||| || | |||||| || ||||| | | ||| | || || | Sbjct 43105 -TGGCG-GGCAAACTGAATGATGTATTCACGAAACACGTAAGCCTGAGTTTTACTGGCTG 43048 Query 13070 ACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAGT 13129 |||||||||||||||| | |||||| | ||| || | |||||| ||| ||| Sbjct 43047 ACAGGAAAATCTGGTTATGGCCGGTCGCTAGGGCGCGCAGCAGAGCTTCGCGGGCAAAGA 42988 Query 13130 AGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATATGGCGGATCCG 13175 || | ||| ||||| || ||||| || || || | |||||| || Sbjct 42987 AGAACGTCGCGCCGATTTGTCGCGATTTGAGAATGTCGCGGATACG 42942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104231531056492