Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq35 170 3e-37 >seq35 Length=455554 Score = 170 bits (188), Expect = 3e-37 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 |||||||| || || || || |||| ||||| || || |||||||||||||| |||| Sbjct 112185 GACCGTACCGGTACGGGCACGTTGTCGATTTTTGGTCATCAGATGCGTTTCAACTTGCAG 112244 Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACGAACTG 99322 ||||| || |||||||| ||||| || ||||| || | || || |||||||| ||||| Sbjct 112245 GAAGGTTTCCCGCTGGTCACGACCAAACGCTGCCATTTACGCTCCATTATTCATGAACTC 112304 Query 99323 CTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTATT 99382 |||||||||||||||||||| || || | ||| | ||| || ||| | || Sbjct 112305 CTGTGGTTCCTGAAAGGCGAAACTAACATTGCTTATCTGCGTGAAAACAATGTCAGCATC 112364 Query 99383 TGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGCG 99441 |||||||| ||| || || | ||||||||||||||||| ||||| || || ||||| Sbjct 112365 TGGGACGAGTGGGCTGACGAAAACGGCGACCTCGGACCGGTTTACGGCAAGCAATGGCG 112423 Score = 140 bits (154), Expect = 5e-28 Identities = 231/331 (70%), Gaps = 2/331 (1%) Strand=Plus/Plus Query 99845 GACCGTCAGTTATCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCG 99904 ||| || | || || || ||||| || || ||| |||| | ||| | || ||||| Sbjct 112593 GACGGTAAATTGTCCTGCCAGCTGTACCAGCGCTCATGCGATATCTTCCTCGGCTTGCCG 112652 Query 99905 TTTAATATTGCGTCATACGCTTTGTTGATCCACATGTTTGCACAGCAG-GCTAACATGAC 99963 || ||||| || ||||| || || | || ||| | || || || || | | ||| Sbjct 112653 TTCAATATCGCCAGCTACGCACTGCTGGTGCATATGATGGCGCAACAATGCGACCTTGAA 112712 Query 99964 CGTGGGTGATTTCGTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTGGAACA 100023 ||||||||||| |||||| | ||||| || || ||||||| ||||| ||||||| Sbjct 112713 -GTGGGTGATTTTGTCTGGACGGGTGGCGATACGCACCTGTACAGCAACCACATGGAACA 112771 Query 100024 AACCCGTACCCAGTTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAA 100083 || | | || | | |||| || ||| |||| || || || | || || || || Sbjct 112772 GACGCATCTGCAACTGAGCCGTGAACCCCGTGCGTTGCCAAAACTTGTCATTAAGCGCAA 112831 Query 100084 GCCAGACTCCATCTTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGACCCGCA 100143 || | |||| | || || || || || ||||| ||||| ||||||| ||||| ||||| Sbjct 112832 ACCGGCCTCCTTGTTTGATTACAACTTCGAAGATTTCGAGATTGAAGGGTACGATCCGCA 112891 Query 100144 TCCTGCAATCAAAGCACCGGTCGCGATATGA 100174 ||||||||||| ||||| ||||| || ||| Sbjct 112892 CCCTGCAATCAAGGCACCTGTCGCTATCTGA 112922 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 99596 GACCAGTTGAAAAACGACCCGGATAACCGTCGTATCATCGTGTCGGCATGGAACGTAGCT 99655 || ||| |||| || ||||| || |||||||| |||||||| ||||||||||| | Sbjct 112476 GAACAGCTGAAGAAAGACCCTGACTCGCGTCGTATTATCGTGTCTGCATGGAACGTGGGC 112535 Query 99656 GACCTCGACGAAATGGCTTTAGCACCGTGCCACGCATTCTTCCAGTTCTA 99705 || || || | ||||| | ||||| |||||||| |||||||||||||| Sbjct 112536 GAACTGGATAAGATGGCGCTGGCACCTTGCCACGCTTTCTTCCAGTTCTA 112585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715847536462800