Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq6760 279 1e-70 seq725 273 6e-69 >seq6760 Length=71796 Score = 279 bits (308), Expect = 1e-70 Identities = 360/497 (72%), Gaps = 0/497 (0%) Strand=Plus/Plus Query 29122 TGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAAT 29181 |||||||| || || ||||| || || || || || || || | || || ||||| | Sbjct 16337 TGTTTGGTCTCGATATAAATCCTTCCGATGTACTCACCTAGCACGCCAATACCTATTAGC 16396 Query 29182 TGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTT 29241 || | ||||| |||||||||| |||||| | | |||||| || ||| |||| || Sbjct 16397 TGGATTCCACCGAGGAAAAGAATAGAAACCAAGATAGACGGATAACCATGAACGGGGTTG 16456 Query 29242 CCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACCTGCAATA 29301 ||||| || | | ||||||||||| || ||||||| ||| |||| ||| || | | Sbjct 16457 CCAAAAATGAGGGTGTCAATAATCATATATACACCGTAGGCGAAAGACAGACCGGCCACA 16516 Query 29302 AACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCCTCC 29361 || | || || || ||||| || || || ||||| |||||||| || ||||| || || Sbjct 16517 AAAAGACCTATATACGTCCACATTCGCAGTGGAAAAGTTGAGAACGATGTTATGCCTTCG 16576 Query 29362 AGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCGTTCGGCA 29421 || || |||||||| | |||||| || || ||||| | |||||| |||||||| | Sbjct 16577 AGAGCAAGGTTCCACAGTTTCCAACCATTAAATTTTGTCGAACCGGCAACGCGTTCATCT 16636 Query 29422 CGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTTCATAAAC 29481 |||| ||||| ||||| || || || || |||||| || || || ||||| || Sbjct 16637 CGGGTATATTCGACAACTTCAGTGCGACCACCGACCCAAGACAGAACCCCTTTCATGAAT 16696 Query 29482 AAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAG 29541 ||||| ||||| || | || ||||| || || || || || |||||||| || Sbjct 16697 AAGTTTCGTTCAGGGAGCAACTTAATGTTTTCTACGACAGCGCGAGACATTAACCTGAAA 16756 Query 29542 TCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATAAAACCAC 29601 |||||||| ||||| || || || || |||||||| | || || ||||||||||||||| Sbjct 16757 TCGCCAACGTTTTCCTCAATCTTAGGCTTGCTGATCATGTTATGGAGCTTATAAAACCAC 16816 Query 29602 TCAGCTGTCTTACGCTT 29618 ||||| | |||||||| Sbjct 16817 TCAGCGCTTTTACGCTT 16833 >seq725 Length=236385 Score = 273 bits (302), Expect = 6e-69 Identities = 555/820 (68%), Gaps = 28/820 (3%) Strand=Plus/Plus Query 1458 CGTCTGAGGAACGGAGAAGAGTCGGATACCCTGAAGACCGGAATCGAAGAGCTTGACGCT 1517 ||||| | ||||| || |||||||| || || || ||||| || ||||| |||| Sbjct 188784 CGTCTTAAAAACGGTGAGGAGTCGGACACGCTTAAAACCGGCATACCTGAGCTGGACGAA 188843 Query 1518 ATCACCGGAGGGATGAACGCAGAAGACCTTGTGATTATTGCTGCTCGTCCAGGTATGGGT 1577 || || || || ||||| || || || | || | |||||||| || |||||||| Sbjct 188844 ATTACAGGCGGACTGAACAACGAGGATCTGATCATCGTAGCTGCTCGCCCTGGTATGGGG 188903 Query 1578 AAAACCGAACTGGCGCTGAAGATAGCCGAAGGCGTGGCAAGTCGTGTTATTCCTGGTTCT 1637 |||||||| | || |||| | || ||||| || || || ||||| || || Sbjct 188904 AAAACCGAGTTTGCTCTGACCGTGGCTGAAGGTGTTGCGGAAAGTACTATTC--GGATC- 188960 Query 1638 GGCG---------TCCGGCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAG 1688 |||| | | |||||| ||| |||||||| |||||||||||||| ||| Sbjct 188961 GGCGATGAGGTGTTGCCGCGCGGCGTGCTGATTTTCAGCATGGAAATGAGCGCTCAGCAG 189020 Query 1689 GTTGTTGAGAGAGGGATTGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCG 1748 || | || | | | || ||||| || ||| |||| || ||||| || || Sbjct 189021 GTCATAGAACGCCAGTTGGCTGGCGCCTCAAACATGCCGGTGTCTGCCCTGCGCAAACCT 189080 Query 1749 TCACGTATGGACGATGAAGGATGGGCGAGAGTTGCAAGCGGGATGAAG----TTGCTGGC 1804 ||||||||| ||||||||| ||||| | | | | || || ||| | ||||| Sbjct 189081 TCACGTATGAACGATGAAGACTGGGCACGCATATCGATGGGCATTAAGCGTTTATCTGGC 189140 Query 1805 AGAGCTGGATGTGTGGGTAGTTGACGCATCGCGTTTGTCTGTCGAAGAAATCAGGTCCAT 1864 ||| | |||||||| || || || ||| || | | || | ||| | | || Sbjct 189141 ----CTGCAGGTGTGGGTTGTCGATGCGTCGAAACTGACCATTGAGCAGATCCGCGCGAT 189196 Query 1865 TTCCGAACGCCACAAGCAGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCGG 1924 | | ||| | ||||| | | | | || ||||| || || || || || || || || Sbjct 189197 TGCGGAAAGGCACAAACGGAAATACCCAAATCTATCTCTCATCCTGTGCGATTACCTTGG 189256 Query 1925 GCTAATTGAGAAACCAAAAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTAG 1984 || || || || || || ||||| || ||||| || || || || |||||||| | Sbjct 189257 CCTGATCGAAAAGCCGCGTGCTGAACGAAACGACCTGGCGATCGCCCACATCTCCGGCGG 189316 Query 1985 CCTGAAAGCGATGGCGAAAGACCTGAAAACTCCAGTTATCTCCCTAAGCCAGCTCTCCCG 2044 | ||||| |||||||| |||||||| || ||||| || || || || ||||| ||||| Sbjct 189317 CATGAAACGCATGGCGAAGGACCTGAAGACGCCAGTGATGTCACTTAGTCAGCTGTCCCG 189376 Query 2045 CGATGTTGAGAAGCGGCCAAAC------AAGCGCCCGACAAACGCAGATTTGCGGGATTC 2098 ||| || |||||||| ||||| || || ||| ||| | || |||| || Sbjct 189377 CGACGTGGAGAAGCGACCAAAGGGCCAGAAACGGCCGGTTAACTCTGACCTGCGCGACGG 189436 Query 2099 AGGAAGCATTGAACAGGACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGA 2158 || ||||| || |||||||| ||| || ||||| || || |||| ||| ||||| Sbjct 189437 GGGGAGCATCGAGCAGGACGCCGACGGGATTTATATGCTGTACCGCGAAGGGGTGTATGA 189496 Query 2159 -CGAGAACAGTAGCGCCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCT 2217 | ||| || |||||||| || ||||||||||||||||| || ||||| ||||| Sbjct 189497 ACCCGAA-AGCCCTGCCGCGCCGTTCGCTGAAATCATCGTGACCAAGAACCGATTTGGTG 189555 Query 2218 CGCTTGGTACGGTTTACCAGCGGTTCTGCAACGGACACTT 2257 ||| ||||| |||||||||| |||| ||||| ||||| Sbjct 189556 AGCTCGGTACCGTTTACCAGCAGTTCAAAAACGGGCACTT 189595 Score = 221 bits (244), Expect = 3e-53 Identities = 481/708 (68%), Gaps = 13/708 (2%) Strand=Plus/Plus Query 31284 CATTCATCAATCAACCTTTTTGCCTCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTC 31343 |||||||||| || | || || || | || || ||||| | || ||||||||||| Sbjct 173927 CATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTT 173986 Query 31344 GGCTGAGGAACTTTGATGATCGGAGCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCC 31403 | ||| || ||||| || | || || || |||||| ||||| || ||||| || || Sbjct 173987 GCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCG 174046 Query 31404 CGGAGGAGTGCCTTAATGAATAAAAGGTGAGTTGCTTTTGTAGCTACTGCTGCCGGCTTA 31463 || || || | ||| || | ||||| |||| || || ||| ||||| | ||| Sbjct 174047 CGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTG-TGCTGAC--CTTC 174103 Query 31464 -GGCTTGAATACCGGAG-GCTGCT-TCCCATTCTTCCTGCAAGCTTCATCCATT-AACTT 31519 ||| |||| | ||| | |||| ||||| |||| | || ||| Sbjct 174104 TGGCGCTCATACTTTGGCGCTTCGATCCCTCTCTTCGC-CAAGGACTGTGAATGCAACCG 174162 Query 31520 CCAGTTTTCCTCATGCCGCCGATTAGTTATCTTCTGGATGGCGGAGTAAATCTTCGTCTC 31579 ||||||| | ||| || ||| || || ||| || | ||| || || | || Sbjct 174163 ATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGATCGCCGTGTAGATTTTGGCTTC 174222 Query 31580 GGTAATATCCTTCAACTGCATTCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTT 31639 ||||||||||||||||| || ||| |||||||| ||||||||||| ||||| || || Sbjct 174223 GGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTTTT 174282 Query 31640 GTCATCATCCAGCGACTTCTTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCCCCTC 31699 |||||||||||| || ||||| | ||| || || |||||||| | ||||||| | || Sbjct 174283 GTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCTTC 174342 Query 31700 AAAAGTCATGTCAGGCGTCTCTCCTAATTTACTTACCCTCCATGCTTCTGCCTTCAGCTT 31759 |||||| | |||||| || || | || | ||| |||| || || Sbjct 174343 AAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTTTT 174402 Query 31760 GTCATGAAGCT-CTGTGGCCTGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTT 31818 ||| || |||| |||| |||| ||| |||| | |||||||||||| | |||| ||||| Sbjct 174403 GTCGTGCAGCTCCTGT-GCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCTTT 174461 Query 31819 TGCCGTTCGGCAATGTGAAACTGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTT 31878 ||| ||||| | ||| || ||||||||| | | |||||| ||||| | ||||| | Sbjct 174462 GCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGACATGT 174521 Query 31879 CAGTTCCTCTGTTATGTCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGATTGAAG 31938 |||||| ||| |||||| | ||||| |||||| | | ||| | || Sbjct 174522 TTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTATTCAG 174578 Query 31939 TGCCGCAATGCAGGCTTGTCGTGTGGTGAGGTAAGGGGATTTCGGTTT 31986 ||| ||||| || ||||| || ||| || ||||||||| || ||||| Sbjct 174579 TGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTT 174626 Score = 158 bits (174), Expect = 3e-34 Identities = 152/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 30746 GTGGGACATATTTGGGACAGAAGTACCAAAAATCGAGTCAATTTGTCGAGCATGTTCAGT 30805 |||||||| ||||||||||||| |||||||| | ||| || || || || || || Sbjct 175480 GTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGT 175539 Query 30806 CAGGTGATTTGGTGCCAGATGAGCATATCGGCGAACCATTTCGATAGACTCCCAGCCACC 30865 | ||||| || |||||||| || ||||| || ||||| ||||| ||||||||||| || Sbjct 175540 TAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCGCC 175599 Query 30866 CATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAACTTGCCCACGTGTG 30925 ||||||||| | || || | ||| || || ||||||| | ||| |||||||| ||||| Sbjct 175600 CATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTG 175659 Query 30926 CCTCAGGTCATGAAA 30940 |||||||| ||||| Sbjct 175660 TCTCAGGTCGTGAAA 175674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133557939929468