Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_031019.1
Length=41809
Score E
Sequences producing significant alignments: (Bits) Value
seq6760 279 1e-70
seq725 273 6e-69
>seq6760
Length=71796
Score = 279 bits (308), Expect = 1e-70
Identities = 360/497 (72%), Gaps = 0/497 (0%)
Strand=Plus/Plus
Query 29122 TGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAAT 29181
|||||||| || || ||||| || || || || || || || | || || ||||| |
Sbjct 16337 TGTTTGGTCTCGATATAAATCCTTCCGATGTACTCACCTAGCACGCCAATACCTATTAGC 16396
Query 29182 TGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTT 29241
|| | ||||| |||||||||| |||||| | | |||||| || ||| |||| ||
Sbjct 16397 TGGATTCCACCGAGGAAAAGAATAGAAACCAAGATAGACGGATAACCATGAACGGGGTTG 16456
Query 29242 CCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACCTGCAATA 29301
||||| || | | ||||||||||| || ||||||| ||| |||| ||| || | |
Sbjct 16457 CCAAAAATGAGGGTGTCAATAATCATATATACACCGTAGGCGAAAGACAGACCGGCCACA 16516
Query 29302 AACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCCTCC 29361
|| | || || || ||||| || || || ||||| |||||||| || ||||| || ||
Sbjct 16517 AAAAGACCTATATACGTCCACATTCGCAGTGGAAAAGTTGAGAACGATGTTATGCCTTCG 16576
Query 29362 AGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCGTTCGGCA 29421
|| || |||||||| | |||||| || || ||||| | |||||| |||||||| |
Sbjct 16577 AGAGCAAGGTTCCACAGTTTCCAACCATTAAATTTTGTCGAACCGGCAACGCGTTCATCT 16636
Query 29422 CGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTTCATAAAC 29481
|||| ||||| ||||| || || || || |||||| || || || ||||| ||
Sbjct 16637 CGGGTATATTCGACAACTTCAGTGCGACCACCGACCCAAGACAGAACCCCTTTCATGAAT 16696
Query 29482 AAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAG 29541
||||| ||||| || | || ||||| || || || || || |||||||| ||
Sbjct 16697 AAGTTTCGTTCAGGGAGCAACTTAATGTTTTCTACGACAGCGCGAGACATTAACCTGAAA 16756
Query 29542 TCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATAAAACCAC 29601
|||||||| ||||| || || || || |||||||| | || || |||||||||||||||
Sbjct 16757 TCGCCAACGTTTTCCTCAATCTTAGGCTTGCTGATCATGTTATGGAGCTTATAAAACCAC 16816
Query 29602 TCAGCTGTCTTACGCTT 29618
||||| | ||||||||
Sbjct 16817 TCAGCGCTTTTACGCTT 16833
>seq725
Length=236385
Score = 273 bits (302), Expect = 6e-69
Identities = 555/820 (68%), Gaps = 28/820 (3%)
Strand=Plus/Plus
Query 1458 CGTCTGAGGAACGGAGAAGAGTCGGATACCCTGAAGACCGGAATCGAAGAGCTTGACGCT 1517
||||| | ||||| || |||||||| || || || ||||| || ||||| ||||
Sbjct 188784 CGTCTTAAAAACGGTGAGGAGTCGGACACGCTTAAAACCGGCATACCTGAGCTGGACGAA 188843
Query 1518 ATCACCGGAGGGATGAACGCAGAAGACCTTGTGATTATTGCTGCTCGTCCAGGTATGGGT 1577
|| || || || ||||| || || || | || | |||||||| || ||||||||
Sbjct 188844 ATTACAGGCGGACTGAACAACGAGGATCTGATCATCGTAGCTGCTCGCCCTGGTATGGGG 188903
Query 1578 AAAACCGAACTGGCGCTGAAGATAGCCGAAGGCGTGGCAAGTCGTGTTATTCCTGGTTCT 1637
|||||||| | || |||| | || ||||| || || || ||||| || ||
Sbjct 188904 AAAACCGAGTTTGCTCTGACCGTGGCTGAAGGTGTTGCGGAAAGTACTATTC--GGATC- 188960
Query 1638 GGCG---------TCCGGCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAG 1688
|||| | | |||||| ||| |||||||| |||||||||||||| |||
Sbjct 188961 GGCGATGAGGTGTTGCCGCGCGGCGTGCTGATTTTCAGCATGGAAATGAGCGCTCAGCAG 189020
Query 1689 GTTGTTGAGAGAGGGATTGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCG 1748
|| | || | | | || ||||| || ||| |||| || ||||| || ||
Sbjct 189021 GTCATAGAACGCCAGTTGGCTGGCGCCTCAAACATGCCGGTGTCTGCCCTGCGCAAACCT 189080
Query 1749 TCACGTATGGACGATGAAGGATGGGCGAGAGTTGCAAGCGGGATGAAG----TTGCTGGC 1804
||||||||| ||||||||| ||||| | | | | || || ||| | |||||
Sbjct 189081 TCACGTATGAACGATGAAGACTGGGCACGCATATCGATGGGCATTAAGCGTTTATCTGGC 189140
Query 1805 AGAGCTGGATGTGTGGGTAGTTGACGCATCGCGTTTGTCTGTCGAAGAAATCAGGTCCAT 1864
||| | |||||||| || || || ||| || | | || | ||| | | ||
Sbjct 189141 ----CTGCAGGTGTGGGTTGTCGATGCGTCGAAACTGACCATTGAGCAGATCCGCGCGAT 189196
Query 1865 TTCCGAACGCCACAAGCAGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCGG 1924
| | ||| | ||||| | | | | || ||||| || || || || || || || ||
Sbjct 189197 TGCGGAAAGGCACAAACGGAAATACCCAAATCTATCTCTCATCCTGTGCGATTACCTTGG 189256
Query 1925 GCTAATTGAGAAACCAAAAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTAG 1984
|| || || || || || ||||| || ||||| || || || || |||||||| |
Sbjct 189257 CCTGATCGAAAAGCCGCGTGCTGAACGAAACGACCTGGCGATCGCCCACATCTCCGGCGG 189316
Query 1985 CCTGAAAGCGATGGCGAAAGACCTGAAAACTCCAGTTATCTCCCTAAGCCAGCTCTCCCG 2044
| ||||| |||||||| |||||||| || ||||| || || || || ||||| |||||
Sbjct 189317 CATGAAACGCATGGCGAAGGACCTGAAGACGCCAGTGATGTCACTTAGTCAGCTGTCCCG 189376
Query 2045 CGATGTTGAGAAGCGGCCAAAC------AAGCGCCCGACAAACGCAGATTTGCGGGATTC 2098
||| || |||||||| ||||| || || ||| ||| | || |||| ||
Sbjct 189377 CGACGTGGAGAAGCGACCAAAGGGCCAGAAACGGCCGGTTAACTCTGACCTGCGCGACGG 189436
Query 2099 AGGAAGCATTGAACAGGACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGA 2158
|| ||||| || |||||||| ||| || ||||| || || |||| ||| |||||
Sbjct 189437 GGGGAGCATCGAGCAGGACGCCGACGGGATTTATATGCTGTACCGCGAAGGGGTGTATGA 189496
Query 2159 -CGAGAACAGTAGCGCCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCT 2217
| ||| || |||||||| || ||||||||||||||||| || ||||| |||||
Sbjct 189497 ACCCGAA-AGCCCTGCCGCGCCGTTCGCTGAAATCATCGTGACCAAGAACCGATTTGGTG 189555
Query 2218 CGCTTGGTACGGTTTACCAGCGGTTCTGCAACGGACACTT 2257
||| ||||| |||||||||| |||| ||||| |||||
Sbjct 189556 AGCTCGGTACCGTTTACCAGCAGTTCAAAAACGGGCACTT 189595
Score = 221 bits (244), Expect = 3e-53
Identities = 481/708 (68%), Gaps = 13/708 (2%)
Strand=Plus/Plus
Query 31284 CATTCATCAATCAACCTTTTTGCCTCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTC 31343
|||||||||| || | || || || | || || ||||| | || |||||||||||
Sbjct 173927 CATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTT 173986
Query 31344 GGCTGAGGAACTTTGATGATCGGAGCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCC 31403
| ||| || ||||| || | || || || |||||| ||||| || ||||| || ||
Sbjct 173987 GCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCG 174046
Query 31404 CGGAGGAGTGCCTTAATGAATAAAAGGTGAGTTGCTTTTGTAGCTACTGCTGCCGGCTTA 31463
|| || || | ||| || | ||||| |||| || || ||| ||||| | |||
Sbjct 174047 CGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTG-TGCTGAC--CTTC 174103
Query 31464 -GGCTTGAATACCGGAG-GCTGCT-TCCCATTCTTCCTGCAAGCTTCATCCATT-AACTT 31519
||| |||| | ||| | |||| ||||| |||| | || |||
Sbjct 174104 TGGCGCTCATACTTTGGCGCTTCGATCCCTCTCTTCGC-CAAGGACTGTGAATGCAACCG 174162
Query 31520 CCAGTTTTCCTCATGCCGCCGATTAGTTATCTTCTGGATGGCGGAGTAAATCTTCGTCTC 31579
||||||| | ||| || ||| || || ||| || | ||| || || | ||
Sbjct 174163 ATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGATCGCCGTGTAGATTTTGGCTTC 174222
Query 31580 GGTAATATCCTTCAACTGCATTCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTT 31639
||||||||||||||||| || ||| |||||||| ||||||||||| ||||| || ||
Sbjct 174223 GGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTTTT 174282
Query 31640 GTCATCATCCAGCGACTTCTTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCCCCTC 31699
|||||||||||| || ||||| | ||| || || |||||||| | ||||||| | ||
Sbjct 174283 GTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCTTC 174342
Query 31700 AAAAGTCATGTCAGGCGTCTCTCCTAATTTACTTACCCTCCATGCTTCTGCCTTCAGCTT 31759
|||||| | |||||| || || | || | ||| |||| || ||
Sbjct 174343 AAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTTTT 174402
Query 31760 GTCATGAAGCT-CTGTGGCCTGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTT 31818
||| || |||| |||| |||| ||| |||| | |||||||||||| | |||| |||||
Sbjct 174403 GTCGTGCAGCTCCTGT-GCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCTTT 174461
Query 31819 TGCCGTTCGGCAATGTGAAACTGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTT 31878
||| ||||| | ||| || ||||||||| | | |||||| ||||| | ||||| |
Sbjct 174462 GCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGACATGT 174521
Query 31879 CAGTTCCTCTGTTATGTCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGATTGAAG 31938
|||||| ||| |||||| | ||||| |||||| | | ||| | ||
Sbjct 174522 TTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTATTCAG 174578
Query 31939 TGCCGCAATGCAGGCTTGTCGTGTGGTGAGGTAAGGGGATTTCGGTTT 31986
||| ||||| || ||||| || ||| || ||||||||| || |||||
Sbjct 174579 TGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTT 174626
Score = 158 bits (174), Expect = 3e-34
Identities = 152/195 (78%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 30746 GTGGGACATATTTGGGACAGAAGTACCAAAAATCGAGTCAATTTGTCGAGCATGTTCAGT 30805
|||||||| ||||||||||||| |||||||| | ||| || || || || || ||
Sbjct 175480 GTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGT 175539
Query 30806 CAGGTGATTTGGTGCCAGATGAGCATATCGGCGAACCATTTCGATAGACTCCCAGCCACC 30865
| ||||| || |||||||| || ||||| || ||||| ||||| ||||||||||| ||
Sbjct 175540 TAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCGCC 175599
Query 30866 CATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAACTTGCCCACGTGTG 30925
||||||||| | || || | ||| || || ||||||| | ||| |||||||| |||||
Sbjct 175600 CATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTG 175659
Query 30926 CCTCAGGTCATGAAA 30940
|||||||| |||||
Sbjct 175660 TCTCAGGTCGTGAAA 175674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133557939929468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |