Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq742 342 7e-89 seq6691 111 2e-19 >seq742 Length=196864 Score = 342 bits (378), Expect = 7e-89 Identities = 1190/1828 (65%), Gaps = 43/1828 (2%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || || ||||| | | || ||||| ||||| || | |||| |||| || ||||| Sbjct 48891 GCAGGCTTTGTTCTCAAGTAATACATTCCAGTCTTCAAGCCCATCTTCCAGCCATAGAAG 48832 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || || || || || | || || || | || || || | ||||||||| Sbjct 48831 TGGATAGAAGTGAGCTTTCCGTAGTTGGGCTCTGCCACGTGTATGTTGAAGGACTGACTT 48772 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGG--AATTT 76980 || || || || ||||||| || || ||||| || || | || ||||| | ||||| Sbjct 48771 TGGTCAATAAAGGCTCCTCGGTCGGCTGCCATCTTGATCA--GTATTTTGTTGGAAATTT 48714 Query 76981 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA----TTTTGAATG 77036 |||||| || ||| | | | | |||| | | || | | ||| ||||||||| Sbjct 48713 CCCAAACTGTCTTGTAGAGATCTCTGATGTGCTTGGGTAT-TCTGTCCAGGTTTTGAATG 48655 Query 77037 GAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTT 77096 || || | | || || ||| || || || || | |||||| | ||| || Sbjct 48654 GATCCGTTGTTGGCAATGATGAGATTTTTCATGTCGTCGTCCCACAAATCAGCCTCGGTC 48595 Query 77097 AAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTG 77156 ||| | | || ||||| |||| || | || |||||||||||||| || || | ||| Sbjct 48594 AAATCACGCAGTAGATGGTGATTCACAACCTGGAATTCTCCAGACAAGACCCTTCTGGTG 48535 Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 || || || || | ||||| | ||||| |||||||| ||||| || || || || Sbjct 48534 TAGATGTTGGAAGTGAAGGGTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAG 48475 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTA-TTTCTGAGACCATGTGTTCTGATTTTATC 77275 || || ||||| ||||| | || | | | || |||| || ||| | ||| ||| | Sbjct 48474 GCGGTAGGCATGGGTGCGA-GAAGCAGCGAGTTCCTGACTCCGTGTATCGCGATCTTAGC 48416 Query 77276 TTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAG 77335 ||| | ||| | ||| | ||||| ||| ||||| | || ||||| || Sbjct 48415 TTTCAAGGCAGCCCAGTTCCACAAATCTGTAGGCTTCTTGTCCCACATCTCATATTGAAG 48356 Query 77336 AATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAG 77395 ||| || || || || |||| || || || || | || || | || || || Sbjct 48355 AATCCCTTTGCTGACAGGACATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAG 48296 Query 77396 TTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATC 77455 || ||||| ||||||| || |||||||| | ||| || || || | | ||| ||| Sbjct 48295 CTCGCAACTTGCTTCCAGAGCACCGTAATACAATGTCTCAAATATTTGTTGATTCAGAAG 48236 Query 77456 TTGTGCTTCAATACTATCAAACGGATAATGTAA--AAGAATAAAGGCATCTGCTAATCCC 77513 || |||| ||| ||||| || ||| | | ||| | ||| |||||||| | || Sbjct 48235 CTGGGCTTTTTCACTCTCAAAAGG-CAATCTCATTAAG-ACAAAAGCATCTGCCAGGCCT 48178 Query 77514 TGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGA 77573 || | ||||||||| || || | || | | | || || || |||||||||| | ||| Sbjct 48177 TGTATTCCAATACCGATGGGGCGGTGACGCATGTTCGATGTTCTAGCTTCTGGTACAGGG 48118 Query 77574 TAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTT 77633 ||| | |||| ||| |||||||| || | |||| || || || ||| ||| Sbjct 48117 TAAAAGTTAACGTCGATAATTTTGTTCAAATTTTTAGTGACAGTCTTGGTTACGATCTTC 48058 Query 77634 AGTTTAAGAAAATCAAAT--CTTCCATCTAT-AACAAACATGTTCAAAGCTATAGATGCT 77690 || || ||| || ||| ||| || ||| |||||||| || | ||| ||||| || Sbjct 48057 AGCTTTTCAAAGTCGAATACCTT--AT-TATCTACAAACATATTGACAGCGATAGAGGCC 48001 Query 77691 AGATTACAAACTGCTACCTCATTAGCGTTGGCA---TATTGTATTATCTCGGTACATAGA 77747 | ||| || || ||||| |||| | |||| | |||| | ||| || || || || Sbjct 48000 AAATTGCAGACAGCTACTTCAT---CTTTGGAAGTGTATTCAACTATTTCTGTGCAGAGG 47944 Query 77748 TTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTA 77807 ||||| || || ||||| |||||||||||||||||||||||| ||||| | |||||| Sbjct 47943 TTACTGCACTTAATAGTTCCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTG 47884 Query 77808 TAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT 77867 || || || | || || || ||||| | || |||||||| || | |||| | | | Sbjct 47883 TACAGCATGTAGGGGGTTCCCGTTTCTACTTGAGATTCGATGATGGCCATCCACA-AAGT 47825 Query 77868 CT-AGCTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATA--TTGAGTATATAGCCGT 77924 || || || ||| | || | || | || ||| || || ||| | |||| Sbjct 47824 CTGCGCCTTGATCTTCTTCTTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCC-- 47767 Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGG-GCATTCATTTGGGCACATCAATGA 77983 |||||||| |||||||| || | || || || ||| || | |||||||| | Sbjct 47766 TCAAATTCTTCTCCCCAGCACTCGTGTAAGCCGGGAGCA-TCGTGGGGGCACATGAGACT 47708 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA-A 78042 ||| || | | || || || ||||| || ||||| || ||||| | ||| || | Sbjct 47707 CCAATCCTCGTTGCTCTCGACACGCTTCATGAACAGATCGGGGATCCACA-AGCCGTAGA 47649 Query 78043 ATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCA 78102 ||| || || | | | ||| || ||||| ||||||||||| | || | || || | Sbjct 47648 ATAAGTCACGTGCACGAACTTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTCAA 47589 Query 78103 TAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTC 78162 || || | ||||| || || | || || || | | |||| || | || || |||| Sbjct 47588 ATATGTCCGCGTGCCACGGCTCAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTC 47529 Query 78163 CCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAG 78222 |||| |||| ||| | ||| |||||||| || || | || ||| || | | || || | Sbjct 47528 CCTGGTCTACATAGCGGGCCGTGTTATTGTACACACGCAGCATGGGGACCAACCCATTGG 47469 Query 78223 ATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAAT--ATTACTAATGGATAT 78280 | ||| || || || | || || || | || || || | | ||| | Sbjct 47468 AGACTCCGTTAGTACCCGCGATGTAGGAACCCTTGGCTCGGATGCAGTGTACATG--AAG 47411 Query 78281 CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACC 78340 || || ||||| || ||| || | || || || | |||| || |||||||| || Sbjct 47410 GCCGATACCTCCAGCAGACTTGGAAACCAGGGCACACTGCTTCAGGGTGTCGTAGATCCC 47351 Query 78341 CTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 78400 || ||||| ||||| ||||| || || || || ||||| ||| || | || Sbjct 47350 TTCAATACTATCATCGCTCATGGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGT 47291 Query 78401 TCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTA 78460 |||| |||| || || || || || || |||| || || || || ||||| Sbjct 47290 GGCTGCGGAGAATAGAGTAGGGCTGGCGTGAGTGAAGTATTTCTCTGACAGAAGGTTGTA 47231 Query 78461 TGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACAT 78520 |||||||| ||||| || ||||| || || || || | ||| | ||| | ||| Sbjct 47230 AGTTTCAATGGCTGAATCAATGTCTTCCCCGTGGATACCGACAGATACCCTCATGAGCAT 47171 Query 78521 ATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 78580 || || |||||||| || || | || |||| || ||||| ||||| || Sbjct 47170 GTGTTGCGGTCTTTCTACAACTTTCCCTTCGATCTTCAGCAGATATGAGCGCTCCAAGGT 47111 Query 78581 TTTAAAACCAAAATAGTTGTA--TGAAA 78606 |||||| ||||| ||||| || ||||| Sbjct 47110 TTTAAATCCAAAGTAGTTATAATTGAAA 47083 >seq6691 Length=42033 Score = 111 bits (122), Expect = 2e-19 Identities = 274/415 (66%), Gaps = 3/415 (1%) Strand=Plus/Plus Query 47976 TCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 48035 || || || ||||| ||||| ||||| || || ||||| || | ||| | || Sbjct 14045 TCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTGACG 14104 Query 48036 GGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTT 48095 || || || || || |||||||||||||| || ||||||||||| | || | | Sbjct 14105 GGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGATAGCTAGG 14164 Query 48096 ACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAA 48155 || | | || ||| | | || ||||| ||||| | || ||||| || || Sbjct 14165 ACTCGTGCGGGGCTGGGTTTCTGTACTAAGTGTTTGAACATGAGGCAGGCAAAGTCGCAG 14224 Query 48156 TGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCA 48215 || ||||| || |||| || || ||||| || || | |||||||| || ||| Sbjct 14225 TGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCATGAGGCCA 14284 Query 48216 CGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCC 48275 || || || |||||||| || | || ||| || || ||||| || ||||||||| Sbjct 14285 CGCTTCTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAGATTCCTTCTACGCAA 14344 Query 48276 GCAAATGCGGTAAGTCTCTCTCCGTAACTGGCT---TCGTTGTGTATCCACCGTTGTGCC 48332 || || || | | ||| ||| | |||| ||| || |||||| | | ||| Sbjct 14345 GCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTGCCGATCCACTGCAGGGCC 14404 Query 48333 CAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 48387 || || ||||||||||| ||||| || | || || | ||| || || || |||| Sbjct 14405 CAGTCTGCCTTCTTCTTCACACACGGTAGGGTCTCCACAGCGTTGAAAAGGAAGT 14459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694071089597760