Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq742 396 4e-105 >seq742 Length=196864 Score = 396 bits (438), Expect = 4e-105 Identities = 1202/1829 (66%), Gaps = 45/1829 (2%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 || || ||||| | | || ||||| ||||| || | |||| |||| || ||||| Sbjct 48891 GCAGGCTTTGTTCTCAAGTAATACATTCCAGTCTTCAAGCCCATCTTCCAGCCATAGAAG 48832 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || || || || || || | || || || | || || || | ||||||||| Sbjct 48831 TGGATAGAAGTGAGCTTTCCGTAGTTGGGCTCTGCCACGTGTATGTTGAAGGACTGACTT 48772 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGG--AATTT 75575 || || || || ||||||| || || ||||| || || | || ||||| | ||||| Sbjct 48771 TGGTCAATAAAGGCTCCTCGGTCGGCTGCCATCTTGATCA--GTATTTTGTTGGAAATTT 48714 Query 75576 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTGTA----TTTTGAATG 75631 |||||| || ||| | | | | |||| | | || | | ||| ||||||||| Sbjct 48713 CCCAAACTGTCTTGTAGAGATCTCTGATGTGCTTGGGTAT-TCTGTCCAGGTTTTGAATG 48655 Query 75632 GATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTT 75691 |||||| | | || || ||| || || || || | |||||| | |||||| Sbjct 48654 GATCCGTTGTTGGCAATGATGAGATTTTTCATGTCGTCGTCCCACAAATCAGCCTCGGTC 48595 Query 75692 AAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTG 75751 ||| | | || ||||| |||| |||| || |||||||||||||| || |||| ||| Sbjct 48594 AAATCACGCAGTAGATGGTGATTCACAACCTGGAATTCTCCAGACAAGACCCTTCTGGTG 48535 Query 75752 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAA 75811 || || || || | ||||| | ||||| |||||||| ||||| || || || || Sbjct 48534 TAGATGTTGGAAGTGAAGGGTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAG 48475 Query 75812 GCAGTCGGCATAGGTGCCACCAATAAACTATTTC-TGAGACCATGTGTTCTGATTTTATC 75870 || || ||||| ||||| | || | | | ||| ||| || ||| | ||| ||| | Sbjct 48474 GCGGTAGGCATGGGTGCGAG-AAGCAGCGAGTTCCTGACTCCGTGTATCGCGATCTTAGC 48416 Query 75871 TTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAG 75930 ||| | ||| | ||| | ||||| || ||||| | || ||||| || Sbjct 48415 TTTCAAGGCAGCCCAGTTCCACAAATCTGTAGGCTTCTTGTCCCACATCTCATATTGAAG 48356 Query 75931 AATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAG 75990 ||| || ||||| || |||| || || ||||| || || ||||| || || || Sbjct 48355 AATCCCTTTGCTGACAGGACATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAG 48296 Query 75991 TTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATC 76050 |||||||| || || | ||||||||||| | ||| || || || | | ||| ||| Sbjct 48295 CTCGCAACTTGCTTCCAGAGCACCGTAATACAATGTCTCAAATATTTGTTGATTCAGAAG 48236 Query 76051 TTGCGCTTCAAGACTATCAAAAGGATAATGTAA--AAGAATAAATGCATCTGCTAGTCCC 76108 || |||| ||| |||||||| ||| | | |||| ||| |||||||| || || Sbjct 48235 CTGGGCTTTTTCACTCTCAAAAGGC-AATCTCATTAAGACAAAA-GCATCTGCCAGGCCT 48178 Query 76109 TGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGG 76168 || | ||||||||| || || | || | | | || || || ||||||||| | |||| Sbjct 48177 TGTATTCCAATACCGATGGGGCGGTGACGCATGTTCGATGTTCTAGCTTCTGGTACAGGG 48118 Query 76169 TAATAATTAATATCTATAATTTTATTGAGATTTCT---GACAA-CTACTTTAACCACGTC 76224 ||| | |||| || |||||||| || | |||| | |||| || ||| || Sbjct 48117 TAAAAGTTAACGTCGATAATTTTGTTCAAATTTTTAGTGACAGTCTTGGTTA----CGAT 48062 Query 76225 CTTTAGTTTGAGAAAATCAAATTTTCCATCTATC-ACAAACATATTAAGAGCTATAGATG 76283 ||| || || ||| || ||| || |||| ||||||||||| | ||| ||||| | Sbjct 48061 CTTCAGCTTTTCAAAGTCGAATACCTTAT-TATCTACAAACATATTGACAGCGATAGAGG 48003 Query 76284 CTAGATTACAAACGGCTACCTCATTAGCATTGGCA---TATTGTATTATCTCCGTGCATA 76340 | | ||| || || ||||| |||| | |||| | |||| | ||| || ||||| | Sbjct 48002 CCAAATTGCAGACAGCTACTTCAT---CTTTGGAAGTGTATTCAACTATTTCTGTGCAGA 47946 Query 76341 GATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCT 76400 | ||||| ||||| |||||||| ||||||||||||||||||||| ||| || | ||||| Sbjct 47945 GGTTACTGCACTTAATAGTTCCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCT 47886 Query 76401 TATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGA 76460 | || || | | || ||||| ||||| | || |||||||| || | |||| | | Sbjct 47885 TGTACAGCATGTAGGGGGTTCCCGTTTCTACTTGAGATTCGATGATGGCCATCCACA-AA 47827 Query 76461 CTCT-AGCTTTTATTATAGATTTGTATCGCTTCTCTCTTTCATA--TTGTGTATATAACC 76517 ||| || || || | || | || || ||| || |||||| | | || Sbjct 47826 GTCTGCGCCTTGATCTTCTTCTTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCC 47767 Query 76518 GTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATG 76577 |||||||| |||||||| || | || || ||| || | || ||||| | Sbjct 47766 --TCAAATTCTTCTCCCCAGCACTCGTGTAAGCCGGGAGCATCGTGGGGGCACATGAGAC 47709 Query 76578 ACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA- 76636 ||| || | | || || || ||||| || ||||| || ||||| | ||| || Sbjct 47708 TCCAATCCTCGTTGCTCTCGACACGCTTCATGAACAGATCGGGGATCCACA-AGCCGTAG 47650 Query 76637 AATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCC 76696 |||| || || | | | ||| || ||||| ||||||||||| | |||| ||| || Sbjct 47649 AATAAGTCACGTGCACGAACTTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTCA 47590 Query 76697 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCT 76756 | || || | ||||| || || | || || || | | | || || | || || ||| Sbjct 47589 AATATGTCCGCGTGCCACGGCTCAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCT 47530 Query 76757 CCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTA 76816 ||||| |||| ||| | ||| |||||||| || || | || ||| || | | || || Sbjct 47529 CCCTGGTCTACATAGCGGGCCGTGTTATTGTACACACGCAGCATGGGGACCAACCCATTG 47470 Query 76817 GATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAAT--ATTACTAATAGATA 76874 || || || || || | || || || || || || | | || || | Sbjct 47469 GAGACTCCGTTAGTACCCGCGATGTAGGAACCCTTGGCTCGGATGCAGT-GTACATGA-A 47412 Query 76875 GGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGC 76934 |||| || ||||| || || || | || ||||| | |||| ||||| ||||| | Sbjct 47411 GGCCGATACCTCCAGCAGACTTGGAAACCAGGGCACACTGCTTCAGGGTGTCGTAGATCC 47352 Query 76935 CCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAG 76994 | || ||||||||||| ||||| || || || || ||||| ||| || | | Sbjct 47351 CTTCAATACTATCATCGCTCATGGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCG 47292 Query 76995 TTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGT 77054 | |||| || | ||||| || |||||||| |||| || || || || |||| Sbjct 47291 TGGCTGCGGAGAATAGAGTAGGGCTGGCGTGAGTGAAGTATTTCTCTGACAGAAGGTTGT 47232 Query 77055 ATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACA 77114 | |||||||| ||| || || || || || || |||| || | ||| | || Sbjct 47231 AAGTTTCAATGGCTGAATCAATGTCTTCCCCGTGGATACCGACAGATACCCTCATGAGCA 47172 Query 77115 TATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAG 77174 | || || |||| ||||||| || | || |||| || ||||| ||||| | Sbjct 47171 TGTGTTGCGGTCTTTCTACAACTTTCCCTTCGATCTTCAGCAGATATGAGCGCTCCAAGG 47112 Query 77175 TTTTAAAACCAAAATAGTTGTA--TGAAA 77201 ||||||| ||||| ||||| || ||||| Sbjct 47111 TTTTAAATCCAAAGTAGTTATAATTGAAA 47083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712320973418880