Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_031048.1
Length=41918
Score E
Sequences producing significant alignments: (Bits) Value
seq223 154 4e-33
seq25848 138 3e-28
seq785 91.5 4e-14
>seq223
Length=511576
Score = 154 bits (170), Expect = 4e-33
Identities = 206/287 (72%), Gaps = 6/287 (2%)
Strand=Plus/Plus
Query 26917 GCCCACGTT------GATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTT 26970
||||||||| || ||| |||||||| |||||||| |||||| ||||||||
Sbjct 459567 GCCCACGTTAACGACGACTTCGGTGGTGTATTTTTCAACGCCAGCCTGATCGGTCCATTT 459626
Query 26971 ACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGC 27030
||||||| |||| ||||||| ||| | |||| ||||| ||||||||| || ||
Sbjct 459627 ACGGGTTTGCAGTGCGCCTTCGATGTAGACCTGAGAACCTTTCTTCAGGTATTCGCCTGC 459686
Query 27031 GATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTC 27090
|| ||| || | |||||||| | || || |||||||||||||| | ||||| | ||
Sbjct 459687 GACTTCTGCTAATTTGCCGAACAACACCACACGGTGCCATTCCGTTTTTTCTTTCTGCTC 459746
Query 27091 GCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCC 27150
||| ||||| || || ||| | || | || || | ||| |||||||| |||||
Sbjct 459747 GCCGGTGGCTTTGTCACGCCAGCTCTCAGACGTTGCCAGAGTGATGTTGGCAACCGCGCC 459806
Query 27151 ACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCCTAAATTACCGA 27197
|| ||||||||||| ||||| || || | || | ||||||||
Sbjct 459807 GCCGTTAGGCATGTAGCGGACTTCCGGGTCTTGTCCCAGATTACCGA 459853
>seq25848
Length=116905
Score = 138 bits (152), Expect = 3e-28
Identities = 192/269 (71%), Gaps = 0/269 (0%)
Strand=Plus/Minus
Query 26927 ATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACCG 26986
||||| |||||||| || || | || ||| ||| |||||| ||||| |||| |
Sbjct 108284 ATTTCCGTGGTGTAACGGTCGATACCCTGCGCATCCTGCCATTTGCGGGTCTGCAGCTGG 108225
Query 26987 CCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTTG 27046
||||| ||| | || || ||| ||| |||||||||||| || ||||| ||||||||
Sbjct 108224 CCTTCGATGTAGACTTTTGCGCCCTTGGTCAGGTATTCACCGGCAATTTCGGCCAGCTTT 108165
Query 27047 CCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTCGCCTGTGGCCTTATCT 27106
||||| | ||| ||||||||||| || || | || | ||||| ||||| || ||
Sbjct 108164 CCGAACACGACCACGCGGTGCCACTCGGTTTTTTCGCGCTGCTCGCCGGTGGCTTTGTCA 108105
Query 27107 TTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACGGCATGTAG 27166
||| ||||||| ||||| | | || | || || ||||| || ||||||||||
Sbjct 108104 CGCCAGTTTTCGGACGTGGCCAGCGTCAGGCTCGCCACCGCGCCGCCGTTCGGCATGTAG 108045
Query 27167 CGCACTTCTGGATCGTTGCCTAAATTACC 27195
|||| || || | | |||||||||||
Sbjct 108044 CGCAGCTCCGGTGCCTGACCTAAATTACC 108016
>seq785
Length=396209
Score = 91.5 bits (100), Expect = 4e-14
Identities = 143/202 (71%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 10096 CGCTTATCGTGAATTGCTGATGCGTCAGCGCGTCAACGAGGCTGCAAAAGCCGTCATGCT 10155
|||||| || ||| || | |||| ||||| || ||||| | || || || ||| |
Sbjct 379462 CGCTTACCGCGAACTGATCCTGCGCCAGCGAGTTAACGAATCCGCCCGCGCGGTAATGGT 379403
Query 10156 GGCTTACGCTACTGGCGCAGACCTGGACCAGCTTGGCGCTAACGTGGGCGTACAGCGTCA 10215
||| || || || || || ||||| ||||| | || ||| |||||||| || |
Sbjct 379402 GGCGTATGCGACGGGAAGCGATCTGGATCAGCTGGCGGCGAACAATGGCGTACAACGACT 379343
Query 10216 GGTCATTACGCCTGCTGATGACACCACCGTGCCGCCA-ACGCCTGCCTTCATGGAATCAG 10274
||| | |||||||||||| |||||| || |||||| |||| || |||||||| |
Sbjct 379342 GGTGCTGACGCCTGCTGATAACACCAAAGTTCCGCCAGTCGCC-GCTGTCATGGAAAGTG 379284
Query 10275 ACGAAGATTTCCGCGCACGCAT 10296
| | |||||||||| | || ||
Sbjct 379283 ATGCAGATTTCCGCACCCGAAT 379262
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133906454819040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |