Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq223 154 4e-33 seq25848 138 3e-28 seq785 91.5 4e-14 >seq223 Length=511576 Score = 154 bits (170), Expect = 4e-33 Identities = 206/287 (72%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 26917 GCCCACGTT------GATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTT 26970 ||||||||| || ||| |||||||| |||||||| |||||| |||||||| Sbjct 459567 GCCCACGTTAACGACGACTTCGGTGGTGTATTTTTCAACGCCAGCCTGATCGGTCCATTT 459626 Query 26971 ACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGC 27030 ||||||| |||| ||||||| ||| | |||| ||||| ||||||||| || || Sbjct 459627 ACGGGTTTGCAGTGCGCCTTCGATGTAGACCTGAGAACCTTTCTTCAGGTATTCGCCTGC 459686 Query 27031 GATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTC 27090 || ||| || | |||||||| | || || |||||||||||||| | ||||| | || Sbjct 459687 GACTTCTGCTAATTTGCCGAACAACACCACACGGTGCCATTCCGTTTTTTCTTTCTGCTC 459746 Query 27091 GCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCC 27150 ||| ||||| || || ||| | || | || || | ||| |||||||| ||||| Sbjct 459747 GCCGGTGGCTTTGTCACGCCAGCTCTCAGACGTTGCCAGAGTGATGTTGGCAACCGCGCC 459806 Query 27151 ACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCCTAAATTACCGA 27197 || ||||||||||| ||||| || || | || | |||||||| Sbjct 459807 GCCGTTAGGCATGTAGCGGACTTCCGGGTCTTGTCCCAGATTACCGA 459853 >seq25848 Length=116905 Score = 138 bits (152), Expect = 3e-28 Identities = 192/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 26927 ATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACCG 26986 ||||| |||||||| || || | || ||| ||| |||||| ||||| |||| | Sbjct 108284 ATTTCCGTGGTGTAACGGTCGATACCCTGCGCATCCTGCCATTTGCGGGTCTGCAGCTGG 108225 Query 26987 CCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTTG 27046 ||||| ||| | || || ||| ||| |||||||||||| || ||||| |||||||| Sbjct 108224 CCTTCGATGTAGACTTTTGCGCCCTTGGTCAGGTATTCACCGGCAATTTCGGCCAGCTTT 108165 Query 27047 CCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTCGCCTGTGGCCTTATCT 27106 ||||| | ||| ||||||||||| || || | || | ||||| ||||| || || Sbjct 108164 CCGAACACGACCACGCGGTGCCACTCGGTTTTTTCGCGCTGCTCGCCGGTGGCTTTGTCA 108105 Query 27107 TTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACGGCATGTAG 27166 ||| ||||||| ||||| | | || | || || ||||| || |||||||||| Sbjct 108104 CGCCAGTTTTCGGACGTGGCCAGCGTCAGGCTCGCCACCGCGCCGCCGTTCGGCATGTAG 108045 Query 27167 CGCACTTCTGGATCGTTGCCTAAATTACC 27195 |||| || || | | ||||||||||| Sbjct 108044 CGCAGCTCCGGTGCCTGACCTAAATTACC 108016 >seq785 Length=396209 Score = 91.5 bits (100), Expect = 4e-14 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 10096 CGCTTATCGTGAATTGCTGATGCGTCAGCGCGTCAACGAGGCTGCAAAAGCCGTCATGCT 10155 |||||| || ||| || | |||| ||||| || ||||| | || || || ||| | Sbjct 379462 CGCTTACCGCGAACTGATCCTGCGCCAGCGAGTTAACGAATCCGCCCGCGCGGTAATGGT 379403 Query 10156 GGCTTACGCTACTGGCGCAGACCTGGACCAGCTTGGCGCTAACGTGGGCGTACAGCGTCA 10215 ||| || || || || || ||||| ||||| | || ||| |||||||| || | Sbjct 379402 GGCGTATGCGACGGGAAGCGATCTGGATCAGCTGGCGGCGAACAATGGCGTACAACGACT 379343 Query 10216 GGTCATTACGCCTGCTGATGACACCACCGTGCCGCCA-ACGCCTGCCTTCATGGAATCAG 10274 ||| | |||||||||||| |||||| || |||||| |||| || |||||||| | Sbjct 379342 GGTGCTGACGCCTGCTGATAACACCAAAGTTCCGCCAGTCGCC-GCTGTCATGGAAAGTG 379284 Query 10275 ACGAAGATTTCCGCGCACGCAT 10296 | | |||||||||| | || || Sbjct 379283 ATGCAGATTTCCGCACCCGAAT 379262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133906454819040