Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq828 168 8e-37 seq785 152 6e-32 seq35 116 4e-21 seq9405 102 9e-17 >seq828 Length=218660 Score = 168 bits (186), Expect = 8e-37 Identities = 171/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 53380 CGTGAAGTTGATATTGAGTTTCAACCGACTGTTAAAGTTGAAGGTGGACAGCACCTAAAC 53439 |||||||| || || |||| ||||| || || |||||||| |||||||| ||| Sbjct 42352 CGTGAAGTGCCAATGGAAGTTCAGCCGACCGTGCGCGTGGAAGGTGGTCAGCACCTGAAC 42293 Query 53440 GTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTGTGAAACATCCTGAGAAGTACCCA 53499 || || || || ||||| ||||| ||||||||||| || |||||||||||||| |||||| Sbjct 42292 GTTAACGTACTGCGTCGTGAAACACTGGAAGATGCGGTTAAACATCCTGAGAAATACCCA 42233 Query 53500 CAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTTAATGCACTGACTCCAGAACAA 53559 ||| | || || || || || || ||||| || || || || |||||||| | ||||| Sbjct 42232 CAGCTGACTATTCGTGTGTCTGGCTATGCGGTACGTTTCAACTCACTGACTGCTGAACAG 42173 Query 53560 CAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATGTAAT 53602 ||||| ||||| || || | || || || |||||| |||||| Sbjct 42172 CAGCGTGACGTGATTACCCGTACTTTCACTGAAAGCCTGTAAT 42130 >seq785 Length=396209 Score = 152 bits (168), Expect = 6e-32 Identities = 761/1191 (64%), Gaps = 72/1191 (6%) Strand=Plus/Minus Query 155821 CAACGAGAACGCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGG 155879 ||||||||| || ||||||||| |||| | | ||||||| ||||| || ||| |||||| Sbjct 143154 CAACGAGAATGCCAACAAAGACAGCAAAG-TGATCCCGACCCAGCGTGACCTGCTGGCGG 143096 Query 155880 GTATCGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGC 155939 |||| || || || || | ||| | || ||| |||| | |||| |||| Sbjct 143095 GTATTGTCGCCAAGCATTACGCCAAACAGCATATTTTACCGCGTGATGTCGTGCTGGCGC 143036 Query 155940 ATGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCCATACACAA 155999 |||| ||| || |||||||||||||| || ||||| ||||||| || | Sbjct 143035 ATGAGCGTGGCGAAATCCATTATCATGACCTCGATTATTCCCCGTTCTTCCCGATGTTTA 142976 Query 156000 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 156059 ||||| ||| | || | ||||| ||| || | | || ||||| |||||||| || | Sbjct 142975 ACTGCATGCTGATCGACCTTAAAGGCATGTTGAATCACGGTTTCAAAATGGGTAATGCGG 142916 Query 156060 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 156119 | || || | || || || || || || || | | || ||||| | ||| | Sbjct 142915 AAATTGACACGCCAAAGTCTATTTCCACCGCAACGGCCGTCACCGCGCAGATTATCGCGC 142856 Query 156120 AGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACG--TGGATAAAGTGCTGGC 156177 || | || || |||||||| || ||| || || || | || |||| ||||| Sbjct 142855 AGGTCGCCAGCCATATTTACGGCGGCACGACCATT--AACCGCATCGACGAAGTACTGGC 142798 Query 156178 TCCGTATGCAGAAATGACATATGAAA--AGCATGTTAAGGATGCTAAAAAGTATAAAATT 156235 |||| | | | || | || | ||| | || ||| || ||| | ||| Sbjct 142797 GCCGTTCGTC--ACCGCCAGCTTCAATAAACATCGTCAGACTGCCGAAGAGTGGCAGATT 142740 Query 156236 TCGTTAGATCGTACATATGCGATGGAAA-AG----ACTGAAAAAGATGTGTT-TGATGCT 156289 | |||| | || || || | || || |||||||| ||||| ||| || Sbjct 142739 GC---AGAT-GCGGATG-GCTTTGCTCACAGCCGTACCGAAAAAGA-GTGTTATGACGCC 142686 Query 156290 TTCCAATCGTATGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACACCTTTC 156349 ||||| ||| ||||| || ||||| |||||||| || |||||||| || || || || Sbjct 142685 TTCCAGTCGCTGGAATATGAGGTTAATACGCTGCACACCGCCAACGGCCAGACGCCGTTT 142626 Query 156350 GTTACTATTACTTTCGGTACTGGTAC-----GGGAATGTTTGAACGAATGATCCAGAAAG 156404 || || | ||| || || || |||||| || |||||||| || Sbjct 142625 GTCACCTTCGGTTTTGGCCTCGGCACATCCTGGGAATCG-----CGCCTGATCCAGCAAT 142571 Query 156405 CGATTCTGAAAAACCGTATTCGTGGTCTGGGTAAACAAGGTATTACCCCTGTGTTCCCTA 156464 | |||||| ||||| ||| || ||||| ||| | | | ||| |||| ||||| | Sbjct 142570 CAATTCTGCGTAACCGCATTGCCGGACTGGGCAAAAATCGCAAAACCGCTGTATTCCCAA 142511 Query 156465 AACTGGTCATGTTT---ATGGAAAAAGGTGTAAA-CATGAATCCTGGGGATCGTAACTAT 156520 ||||||| |||| || | || | || ||| || || || || ||||| Sbjct 142510 AACTGGT---GTTTGCCATCCGTGACGGCCTGAATCATAAAGCC-GGTGACGCCAACTAC 142455 Query 156521 GACATCAAACAATTGGCTCTGGAATGCGCTTCGAAACGTATGTACCCAGATATC----AT 156576 |||||||| ||| |||| ||||||||||| || ||||||||||| || ||| || Sbjct 142454 GACATCAAGCAACTGGCACTGGAATGCGCCAGCAAGCGTATGTACCCGGACATCCTCAAT 142395 Query 156577 TA-GTTCGGCTAATAACCGCCTTATCACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTT 156635 || | || | | | | | |||| ||||| |||| | | || ||||| | Sbjct 142394 TATGATCAGGTGGTGAAAG-----TCACAGGTTC----GTTCAA--AACGCCGATGGGCT 142346 Query 156636 GTCGCAGTTTCCTTAGTGTGTGGCATGATGATAACGGTAATGAAATTCTGGATGGACGTA 156695 | ||||||||||| | |||| |||| || || || | || | || || || | Sbjct 142345 GCCGCAGTTTCCTGGGCGTGT---ATGAAGAAAATGGCGAGATGATCCACGAGGGCCGCA 142289 Query 156696 ATAACTTGGGTGTGGTGACAATTAACCTCCCGCGTATTGCTCTTGAAGCACANNNNNNNN 156755 |||| | || ||| | | | || || ||||||||||| || ||||| | Sbjct 142288 ATAATATCGGCGTGATCAGCCTGAATCTGCCGCGTATTGCGCTGGAAGCGAACCGCGACG 142229 Query 156756 NNNNNNNNNNNNNNNCTTTTTGGCGTATCCTTGATGACCGTCTGGGTTTGTGCTTTGAA- 156814 | || ||| | || || || ||| || || || ||| Sbjct 142228 AAGCGG---------CGTTCTGGGCACTGCTCGACGAGCGTTTGCTGCTG-GCGAAGAAA 142179 Query 156815 GCCCTGATGACTCGAATTGATAGCCTACGTGGTGTTAAAGCCAGCGTTGCGCCTATCCTG 156874 || |||||||| || |||| | || || | |||||| |||| ||||| |||||| Sbjct 142178 GCGCTGATGACCCGCATTGCACGTCTGGAAGGCATCAAAGCCCGCGTGGCGCCAATCCTG 142119 Query 156875 TACACAGAAGGTGCATTTGGTGTCCGTCTGAATCCTGATGATGAAATT-CTGGAACTGTT 156933 |||| |||||||| | ||||| || ||||| |||| || || ||| | || | | || Sbjct 142118 TACATGGAAGGTGCGTGCGGTGTGCGCCTGAAAGCTGACGACGATATTTCCGGCA-TCTT 142060 Query 156934 CAAAAATGGGCGTAGCTCTATCAGTCTGGGATACATCGGACTGCATGAAAC 156984 ||||||||| ||| ||| || || |||||||| || |||||||||| Sbjct 142059 CAAAAATGGCCGTGCCTCGATTTCGCTCGGATACATTGGCGTGCATGAAAC 142009 >seq35 Length=455554 Score = 116 bits (128), Expect = 4e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 42312 ATCATCGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCATTGCGTCCGTGTCAC 42371 || ||||| || ||||||||| | || |||||||| ||||| || || || ||| Sbjct 112509 ATTATCGTGTCTGCATGGAACGTGGGCGAACTGGATAAGATGGCGCTGGCACCTTGCCAC 112568 Query 42372 TGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCG 42431 ||||||||||||| || | |||||||| |||| ||| ||| ||||| || Sbjct 112569 GCTTTCTTCCAGTTCTATGTGGCCGACGGTAAATTGTCCTGCCAGCTGTACCAGCGCTCA 112628 Query 42432 GTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGACGCATATT 42491 ||| ||||| | || |||||||||||||||||| |||||| || ||| |||||| Sbjct 112629 TGCGATATCTTCCTCGGCTTGCCGTTCAATATCGCCAGCTACGCACTGCTGGTGCATATG 112688 Query 42492 ATCGCTGATATTTGCGGGTACGAAGTAGGTGATCTGGTTTGGACAGGTGGTGAT 42545 || || | |||| ||||| |||||| | || ||||| ||||| ||| Sbjct 112689 ATGGCGCAACAATGCGACCTTGAAGTGGGTGATTTTGTCTGGACGGGTGGCGAT 112742 >seq9405 Length=40329 Score = 102 bits (112), Expect = 9e-17 Identities = 275/413 (67%), Gaps = 12/413 (3%) Strand=Plus/Plus Query 44581 ATCAAAAAATATGGCTTGCGTAACTCAACTCTTTCCGCTTTAATGCCATGTGAGAGTAGT 44640 ||||||| | ||| |||||||||| || || || || | ||||| | |||| | Sbjct 35094 ATCAAAACGCACGGCCTGCGTAACTCCACGCTGTCTGCGCTGATGCCGTCCGAGACCTCT 35153 Query 44641 TCTCAAGTAAGCAACTCAACAAACGGGATTGAACCGCCTCGCGGTCCTGTGAGTGTGAAA 44700 || || | |||| | || ||||| || || || || ||||| | | | ||| | ||| Sbjct 35154 TCGCAGATCTCCAACGCTACCAACGGTATCGAGCCACCGCGCGGCCATATCAGTATTAAA 35213 Query 44701 TCTTCGAAAGAAGGT-TCATTCAACCAGGTAGTACCGAACCA-GAACGATCAGATTGATT 44758 | |||||||| || || | | | |||| || ||| | | || || || || ||| Sbjct 35214 GCGTCGAAAGACGGGATCCTGCGTC-AGGTCGTGCCGGAGTATGAGCG-TCTGAAAGATC 35271 Query 44759 TCTATGATTATCTCTGGACAATGGCAAAACGCGGTAATAAAGGTTATCTGTCTCATGTTG 44818 || || || ||| ||| | || || | || |||||| | |||| Sbjct 35272 AGTACGAACTGCTGTGGGATATGCCGAACAACG------ACGGCTATCTGCAACTGGTTG 35325 Query 44819 CTGTTATGCAGAAGTTTGTTGATCAAGCGATCTCTGCAAACACCAACTATGATCCGGCTA 44878 || |||||||| || | ||||| ||||| || | |||||||||||||| ||| | Sbjct 35326 GCGTGATGCAGAAATTCATCGATCAGGCGATTTCGTCCAACACCAACTATGACCCGTCGC 35385 Query 44879 ACTTCCCAGATGGTAAAGTGAAATCTGAAACCATCATTGAT-GACCTGCTTTATGCGAAC 44937 |||||| | |||||||| |||||| | |||| ||| |||| || || Sbjct 35386 GCTTCCCGAACAGTAAAGTGCCGA-TGAAACAGTTGTTGAAAGACTTGCTGACAGCCTAC 35444 Query 44938 TACTACGGCGTGAAAACTCTGTATTATCACAACACCCGCGACGGTGCAGGTGA 44990 | | ||||| ||||| ||||||||||| ||||||||||||||||| | ||| Sbjct 35445 AAATTTGGCGTCAAAACGCTGTATTATCAGAACACCCGCGACGGTGCTGATGA 35497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576076702348560