Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq35 136 6e-27 >seq35 Length=455554 Score = 136 bits (150), Expect = 6e-27 Identities = 223/319 (70%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 200842 TCCTGTCAGCTGTATCAGCG-TAGCGCTGATATGTTTTTAGGCGTGCCGTTCAACATTGC 200900 ||||| |||||||| ||||| | || ||||| || | ||| |||||||||| || || Sbjct 112605 TCCTGCCAGCTGTACCAGCGCTCATGC-GATATCTTCCTCGGCTTGCCGTTCAATATCGC 112663 Query 200901 ATCATACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTGTCGGTGATTT 200960 |||||||| ||| | || ||| | || ||||| | | | || |||||||| Sbjct 112664 CAGCTACGCACTGCTGGTGCATATGATGGCGCAACAATGCGACCTTGAAGTGGGTGATTT 112723 Query 200961 CGTATGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGTTCGTCTGCA 201020 || ||||||||||| || ||| | |||||||| ||| || ||| | |||||| Sbjct 112724 TGTCTGGACGGGTGGCGATACGCACCTGTACAGCAACCACATGGAACAGACGCATCTGCA 112783 Query 201021 ACTGTCTCGTGATCCGCGTCCTTTACCGAAGTTGAAAATTCTTCGTAAGCCGGACTCTAT 201080 |||| ||||| || ||| | || || || | ||| || || |||| ||| | Sbjct 112784 ACTGAGCCGTGAACCCCGTGCGTTGCCAAAACTTGTCATTAAGCGCAAACCGGCCTCCTT 112843 Query 201081 CTTCGATTACAAGTTCGAAGACTTTGAGCTTACTGGTTACGAACCGCATCCTGCGATAAA 201140 || |||||||| |||||||| || ||| || || ||||| ||||| ||||| || || Sbjct 112844 GTTTGATTACAACTTCGAAGATTTCGAGATTGAAGGGTACGATCCGCACCCTGCAATCAA 112903 Query 201141 AGCACCGGTGGCGATATGA 201159 ||||| || || || ||| Sbjct 112904 GGCACCTGTCGCTATCTGA 112922 Score = 120 bits (132), Expect = 5e-22 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 200098 GACCGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAATCTACAA 200157 ||||||||||||| || ||| ||||| ||| |||||||| ||||| | || Sbjct 112185 GACCGTACCGGTACGGGCACGTTGTCGATTTTTGGTCATCAGATGCGTTTCAACTTGCAG 112244 Query 200158 GACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCACGAGCTG 200217 || || ||||| |||| |||||||| |||||| | || ||||| ||||| || || Sbjct 112245 GAAGGTTTCCCGCTGGTCACGACCAAACGCTGCCATTTACGCTCCATTATTCATGAACTC 112304 Query 200218 TTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACCATT 200277 |||||||||| || || || || || || |||||| || |||||||||| ||| Sbjct 112305 CTGTGGTTCCTGAAAGGCGAAACTAACATTGCTTATCTGCGTGAAAACAATGTCAGCATC 112364 Query 200278 TGGGACGAATGGGC 200291 |||||||| ||||| Sbjct 112365 TGGGACGAGTGGGC 112378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 782685977472000