Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq35 214 3e-50 >seq35 Length=455554 Score = 214 bits (236), Expect = 3e-50 Identities = 232/308 (75%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAGCTGAC 196073 |||||||||||| |||| || ||||| | ||| | | || || | ||||| ||| Sbjct 112128 ATGAAACAGTATCTGGATTTAATGCAGAAAGTGCTCGATGAGGGCACCCCTAAAGCCGAC 112187 Query 196074 CGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAAA 196133 |||||||| |||||||| | || ||||| || ||||||||||||| || ||| || Sbjct 112188 CGTACCGGTACGGGCACGTTGTCGATTTTTGGTCATCAGATGCGTTTCAACTTGCAGGAA 112247 Query 196134 GGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTTG 196193 || |||||||||||||| |||||| | || | || || || || || ||||| || Sbjct 112248 GGTTTCCCGCTGGTCACGACCAAACGCTGCCATTTACGCTCCATTATTCATGAACTCCTG 112307 Query 196194 TGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTGG 196253 ||||||||||| ||||| || ||||| |||||| || ||||| ||||| |||||| Sbjct 112308 TGGTTCCTGAAAGGCGAAACTAACATTGCTTATCTGCGTGAAAACAATGTCAGCATCTGG 112367 Query 196254 GATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGTGCA 196313 || |||||||| || ||| | ||||| || || || || ||||| ||||| |||||||| Sbjct 112368 GACGAGTGGGCTGACGAAAACGGCGACCTCGGACCGGTTTACGGCAAGCAATGGCGTGCC 112427 Query 196314 TGGGTTGC 196321 |||| ||| Sbjct 112428 TGGGGTGC 112435 Score = 165 bits (182), Expect = 1e-35 Identities = 238/332 (72%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 196737 CCGACGCGTGTACTGTCCTGTCAGCTTTACCAGCGCAG-TGCAGACGTCTTCCTCGGTGT 196795 |||||| || | ||||||| ||||| ||||||||| ||| || |||||||||| | Sbjct 112591 CCGACG-GTAAATTGTCCTGCCAGCTGTACCAGCGCTCATGC-GATATCTTCCTCGGCTT 112648 Query 196796 CCCGTTCAACATCGCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATAT 196855 |||||||| ||||| ||||| ||| |||| || ||| |||| || || | | | Sbjct 112649 GCCGTTCAATATCGCCAGCTACGCACTGCTGGTGCATATGATGGCGCAACAATGCGACCT 112708 Query 196856 GGTGGCGGGTGATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGA 196915 | | ||||||||| ||||||||||| |||||||| || |||||| ||||| |||| Sbjct 112709 TGAAGTGGGTGATTTTGTCTGGACGGGTGGCGATACGCACCTGTACAGCAACCACATGGA 112768 Query 196916 ACAGGCCACGTTGCAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACG 196975 |||| | |||| || ||||| ||| | || |||| || || || || || || Sbjct 112769 ACAGACGCATCTGCAACTGAGCCGTGAACCCCGTGCGTTGCCAAAACTTGTCATTAAGCG 112828 Query 196976 TAAACCGGATTCCATTTTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAG 197035 ||||||| ||| | || || || || ||||||||||| || || | || ||||| Sbjct 112829 CAAACCGGCCTCCTTGTTTGATTACAACTTCGAAGATTTCGAGATTGAAGGGTACGATCC 112888 Query 197036 CCACCCACCCATTAAGGCACCGGTTGCCATCT 197067 ||||| | || |||||||| || || |||| Sbjct 112889 GCACCCTGCAATCAAGGCACCTGTCGCTATCT 112920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769644408427440