Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq223 614 4e-171 seq6488 381 4e-101 seq9046 221 8e-53 seq25848 102 5e-17 seq785 96.9 2e-15 >seq223 Length=511576 Score = 614 bits (680), Expect = 4e-171 Identities = 916/1295 (71%), Gaps = 6/1295 (0%) Strand=Plus/Plus Query 96701 TAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCCA 96760 || |||||||| || || | || |||||||| | || | || || || || ||||| Sbjct 474337 TAATTATCAAATCGCGACCACTGACCGTTAAAGGTCAGGCGGACGGTACCGATCGGGCCG 474396 Query 96761 TTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATAA 96820 || ||||| || |||| || | | || ||||| || ||| || | ||||||| Sbjct 474397 TTACGTTGTTTACCGAGGATGATTTGCGCGATGCCTTTTTCTTCACTGTTATCGTGATAA 474456 Query 96821 ACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTCA 96880 || ||||| ||||| | |||||||| | ||| ||||||||||| || | ||||||||| Sbjct 474457 ACCTCGTCACGATAGATGAACATGATTAAGTCGGCGTCCTGCTCGATGGAACCTGATTCA 474516 Query 96881 CGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGTTGT 96940 ||||| || || || ||||| ||||| || ||||| || || || ||| ||||| || Sbjct 474517 CGTAAGTCGGAGTTGACCGGGCGTTTATCGGCACGTTGCTCCAGGCTTCGGTTAAGCTGC 474576 Query 96941 GACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAATC 97000 |||| ||||||||||| || || ||||| ||||||| ||| || || ||||| || || Sbjct 474577 GACAGCGCCACCACCGGCACCTGCAATTCTTTCGCCAGCGCTTTAAGCGAGCGGGAGATT 474636 Query 97001 TCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAGTTGCAGGTAG 97060 ||||| ||||||||||| |||||||| |||| ||| |||||||| || || || ||| Sbjct 474637 TCGGCGATTTCCAGCGTACGGTTATCGGACAGCGACGGAACGCGCATCAGCTGGAGATAG 474696 Query 97061 TCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCGGGAACGT 97120 || ||||| |||| |||| ||| || | ||| | | ||| || ||||| ||||| Sbjct 474697 TCAATCATGATCAGACTCAGACCGCCGTGTTCACGGAAGATACGGCGCGCGCGCGAACGG 474756 Query 97121 AGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTGTCCAACAGA 97180 | || || ||||||||| || |||||||| ||| | || || | || || | ||| Sbjct 474757 ACTTCCGTTGGCGTCAGGCCGGACGAGTCATCGATATACATGTTACGTTTTTCGAGCAGG 474816 Query 97181 ATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCTGTTCGAATA 97240 || ||||| | || |||| |||||||| || ||||| | ||| || || || || || Sbjct 474817 ATCCCCATGGTGCTGGAAATTCGCGCCCAGTCTTCGTCATCAAGCTGACCGGTACGGATT 474876 Query 97241 CGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGGTGGCTCGGC 97300 ||||| || ||||| | ||| || ||||| |||||||| | ||||| || ||| Sbjct 474877 TTGGTCTGGTCGACGCGGGAAAGCGACGCCAGCATACGCATCATGATCTGGTCGCCGGGC 474936 Query 97301 ATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATTTTCGACGAGA 97360 |||||||| || || | || || || ||||| | | || ||||||||| |||| Sbjct 474937 ATCTCAAGACTGAAGATTAAGACCGGTTTATCCTGCATCATCGCCGCATTTTCGGCGAGG 474996 Query 97361 TTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGATGAGATCGGAC 97420 ||||| ||||||||||| || ||||| || || || || || || ||||| ||||| || Sbjct 474997 TTCATTGCAAACGTGGTTTTACCCATCGACGGACGTGCCGCCACGATGATCAGATCCGAT 475056 Query 97421 GACTGAAGCCCTGCCGTCTTCTTATTGAGATCGGTAAATCCGGTATCAAGTCCCGTTACA 97480 || | || || || ||||||| |||||| | | | ||||| | || ||||| Sbjct 475057 TTTTGCAAACCGGCGGTTTTCTTATCGAGATCCGCATAGCCGGTGGACACACCGGTTACG 475116 Query 97481 CCATCATGCGGTCGCTGAAACAACTCTTCTATGCGAGATACCGTTGCATCGAGAATGCTG 97540 || || ||||| ||||| |||| ||||| || || || || || || ||||| | | Sbjct 475117 CCGTCGTGCGGGCGCTGGAACAGTTCTTCGATACGCGAAACGGTGCTTTCCAGAATACGG 475176 Query 97541 GCGATATCTTTTGGACCACTACCGCTCTTTTG--TCGTTTTTCAGCTATTTCAAAAACGC 97598 |||| ||| || | || | || | || || ||| || || | || |||| Sbjct 475177 TCGATGCTTTTCGGGC--CTTCGTCTTTACTGGCGCGGGATTCGGCAATCTGGAATACGC 475234 Query 97599 GGCGTTCGGCCATATCCAGCAATTCATTGCTGCCCCGGCCATCCTGCGCATATCCAGCTT 97658 || |||||| | ||||||| || | ||||| || || | | | |||| || || | Sbjct 475235 GGGATTCGGCTAAGTCCAGCAGGTCTTCGCTGCTGCGCCCCTGCGGATCATAACCCGCAT 475294 Query 97659 CAGCTATTTCATTTGCGACGGAAATCATTTCACGAACAACCGCGCGTTCACGAACGATAT 97718 | || |||||||| ||||||||||||||||| ||||| || ||||||||||| ||||| | Sbjct 475295 CGGCAATTTCATTGGCGACGGAAATCATTTCGCGAACGACTGCGCGTTCACGCACGATGT 475354 Query 97719 CCGCATAAGCACAAATATTTGCCGCGCTGGGCGTGTTCTTTGACATCTCCGCAAGGTACG 97778 | |||||||| | ||||| ||||| || || ||||| || || | ||| || || || | Sbjct 475355 CGGCATAAGCGCCGATATTCGCCGCACTTGGGGTGTTTTTCGAGAGCTCTGCCAGATAGG 475414 Query 97779 CAAAACCACCGGCGCGTTCTAATTTACCGTTCTGTTCAAGTGCTTCAGCAAGTGTTATCA 97838 | ||||| ||| || || | || || |||||||| || | ||||| ||| || |||| Sbjct 475415 CGAAACCGCCGACGGAATCCAGTTCGCCTTTCTGTTCCAGGGATTCAGAAAGCGTAATCA 475474 Query 97839 AATCAATCGGTTTGC-CATGACTTAATAACCTCTCCATCTCACTGAAAATTTCACGATGA 97897 || |||||||||| ||| | | || | || ||| || ||||||| ||||| Sbjct 475475 GGTCGATCGGTTTGCTCATCTC-CAGCAAACGCTGCATTTCGGTGAAAATCAGGCGATGC 475533 Query 97898 GCATTGGTATAAAAATCATCAGCAACTATACGATCTGCCACTTCATCCCAGCGGCAGTTA 97957 | | | | || |||| || | ||| || || || | ||||||||| |||| Sbjct 475534 GGGCGGCTGAAGAAGTCATTGCTGACCACACGCTCGGCGACGTTATCCCAGCGTTCGTTA 475593 Query 97958 TCAAGCATTAAGCCACCAAGTACAGCTTGTTCTGC 97992 || ||||| | || || || || | |||||| || Sbjct 475594 TCCAGCATCAGCCCGCCCAGAACGGATTGTTCAGC 475628 Score = 179 bits (198), Expect = 2e-40 Identities = 246/343 (72%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 44695 CGTCACGGCGAGCGCCGATCATTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCG 44754 || |||||| |||||| ||| ||||||||||||||| | | |||| | ||| || | Sbjct 459536 CGGCACGGC---CGCCGAGCATCTGCATGGTGCCGCCCACGTTAACGACGACTTCGGTGG 459592 Query 44755 TGTAACGTTCTACACCGGCGTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGT 44814 |||| ||| || || || | ||| ||||| |||||||||| ||| |||||||||| Sbjct 459593 TGTATTTTTCAACGCCAGCCTGATCGGTCCATTTACGGGTTTGCAGTGCGCCTTCGATGT 459652 Query 44815 AGACCTGAGAACCTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAA 44874 |||||||||||||||| | || || | || | ||| || | ||| |||||||| | Sbjct 459653 AGACCTGAGAACCTTTCTTCAGGTATTCGCCTGCGACTTCTGCTAATTTGCCGAACAACA 459712 Query 44875 CGACTTTATGCCATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGTCGCGCCATGATT 44934 | || |||||||| |||| |||||||| | ||| || ||||| ||||| | Sbjct 459713 CCACACGGTGCCATTCCGTTTTTTCTTTCTGCTCGCCGGTGGCTTTGTCACGCCAGCTCT 459772 Query 44935 CATTCGTTGCGATGCTGAGTCTTCCGACCGCTCCGCCATTTGGTATATACCTGATCTCCG 44994 || |||||| | ||| | | ||||| ||||| || || || || | || |||| Sbjct 459773 CAGACGTTGCCAGAGTGATGTTGGCAACCGCGCCGCCGTTAGGCATGTAGCGGACTTCCG 459832 Query 44995 GGTCTTGCCCCAGGGTACCAATCAGGATGACTTTGTTTACACC 45037 ||||||| ||||| |||| | || || ||||||||||| || Sbjct 459833 GGTCTTGTCCCAGATTACCGACGAGAATAACTTTGTTTACGCC 459875 >seq6488 Length=277817 Score = 381 bits (422), Expect = 4e-101 Identities = 601/851 (71%), Gaps = 25/851 (3%) Strand=Plus/Plus Query 64267 CGAGCGACGGTTGTAATCTGTTGTCCATTTCCACCGCGCATTACTCCCGGTCATTCGCTG 64326 ||| || ||||| ||| | || ||||||||| ||||| |||||||| | || Sbjct 208751 CGACCGCCGGTTATAAGCCGTGTGCCATTTCCAGTAAGCATTGCTCCCGGTACGCCTCTA 208810 Query 64327 ATTAGCCACTGCACGGTTACGGTCTGCATATTCACCGGGCCAGTAACCCGCACCTTTTCG 64386 | || || || | || | ||| ||||| || | |||||||||||||| ||| Sbjct 208811 CCTGGCTACCGCCTGATTTCTGTCCGCATACTCCGCCGGCCAGTAACCCGCCTAGGCTCG 208870 Query 64387 GGGCGGGATAAGCGCGCTGATTTTCTTACGCCGCAGTTCATCGTGACAGAGCCGGGTATC 64446 |||||||||||||| |||||||| || ||| ||| || | || || || || || Sbjct 208871 CGGCGGGATAAGCGCCCTGATTTTTTT--GCCACAGCTCGTGATGGCAAAGTTTTGTGTC 208928 Query 64447 GTAAGCTCCATCGGCGGCGGCTGACCTGATTTTC-CGGTGGGTTTGCCGGATTAACCCGG 64505 ||||| |||||||| | || ||||| | || || ||||| || || || | || | Sbjct 208929 ATAAGCGCCATCGGCAGAAGC-GACCTTAACTTGACGATGGGTCTGACGAATAAGTCCCG 208987 Query 64506 GGAAGGCCTCTGAGTCCGTAACGTTGTTCAGCGACAGGTCAGCGCAGATGATTTCATGTG 64565 | || |||||| ||| || || || ||||| ||||||||||||||||| | ||||| | Sbjct 208988 GTAATGCCTCTACGTCAGTCACATTATTCAGGGACAGGTCAGCGCAGATAACCTCATGAG 209047 Query 64566 TTTTACTGTCAACTGCCAGATGCAGCTTACGCCATATACGACGGCGTTCCTGGCCATGCT 64625 | ||| || ||||| || || || ||||| | || || |||||| || || | Sbjct 209048 TACCGGCGTCCACCGCCAGGTGAAGTTTCCGCCAGACGCGGCGCTTTTCCTGACCGTGTT 209107 Query 64626 TTTTGACTTTCCACTCGCCTTCACCGAAGACCTTCAGCCCGGTGGAATCAATTACCAGGT 64685 |||| || ||| ||||||||||||||||||| || | | |||||| || || || || | Sbjct 209108 TTTTCACCTTCTACTCGCCTTCACCGAAGACTTTTAATCTGGTGGAGTCGATAACAAGAT 209167 Query 64686 GTGCGATTTCACCCCGGGTGGGCGTTTTGAAACTGATATTAACCGACTTTGCCCGCCTGC 64745 | || |||| ||| || | ||| ||||| || ||| | || |||| | || || | Sbjct 209168 GGGCAATTT-ACCGCGCGCGGGAGTTTTAAACGGGATGTGGACGAACTTAGTCCACCAAC 209226 Query 64746 TGACACAGCTGTAATCCGGGCAGCGTAGCGGAACGTTCATCAGAGAAAAAATGGAATCAA 64805 |||| ||| ||||||||| || | ||||| | || ||||| | |||||||||||||| Sbjct 209227 TGACGCAGGAGTAATCCGGACACCTGAGCGGGAGCTTTATCAGGGTAAAAATGGAATCAA 209286 Query 64806 TAAAGCCCTGCGCAGCGCGCAGGGTCAGCCTGAATACGCGTTTAATGACCAGCACAGTCG 64865 |||| |||||||| |||||||| || || | || ||||||| | | ||| || || | Sbjct 209287 TAAATCCCTGCGCGGCGCGCAGCGTGAGGCGAAAAACGCGTTAGAGCATCAGTACCGTAG 209346 Query 64866 TGATGGCAAGGTCAGAATAGCGCTGAGGTCTGCCTCGTGAAGAAGGTGTTGCTGAC-TCA 64924 || || || |||||||| ||||| || | || ||||||| | |||||| | ||| Sbjct 209347 AAATAGCGAGCTCAGAATAACGCTGCGGACGACCGCGTGAAG-ACGTGTTGGGCTCGTCA 209405 Query 64925 TACCAGGCCTGAATAGCTTCATCATCCAGCCAGAAAGTTATGGAGCCACGGTTGATGAGG 64984 |||||||||| ||| || ||||| |||||||| || | | |||| Sbjct 209406 TACCAGGCCTTAATGGCCGACTCATCAAGCCAGAATGTCA-------------GTTGAGC 209452 Query 64985 GCTTTATTGTAGGTGGGCCAGTTGGTGATTTTGAACTTTTGCTTTGCCACG-GAACGGTC 65043 || || | ||||| | ||||| ||||||||| ||||||| ||||||||| || | Sbjct 209453 GCATTGTAGTAGGGAGCCCAGTGCGTGATTTTGTACTTTTGTTTTGCCACGTGATATCGC 209512 Query 65044 TGCGTTGTCGGGAAGATACGTGATCTGATCCTTCAACTCAG--CAAAAGTTCGATTTATT 65101 ||| || || || |||||| ||||| | |||| | ||||||||||||||||| Sbjct 209513 TGCAGGATCAGG-AGCGTGGTGATCGGATCCCT-AACTACGGCCAAAAGTTCGATTTATT 209570 Query 65102 CAACAAAACCA 65112 ||||||| ||| Sbjct 209571 CAACAAATCCA 209581 >seq9046 Length=37467 Score = 221 bits (244), Expect = 8e-53 Identities = 248/332 (75%), Gaps = 0/332 (0%) Strand=Plus/Plus Query 65148 GCCAGCACATCGCGGCGGCTCTCTGCGTTCTGTTGCGGCTGGGTAAAATAGGTCACCAGA 65207 || |||||||| || ||| | ||| | | || ||| ||||| ||||| |||||||| Sbjct 31023 GCGAGCACATCACGACGGGATTTTGCATCTTTTTCCGGTTGGGTGAAATACGTCACCAGC 31082 Query 65208 ACCAGCGGCGCACGACCCTGCGGCCAGATCACCGCAATATCATTGGTGGTGCCGTAGCCG 65267 ||||||||||| | ||||||||||| || ||||||||||| |||||||| || Sbjct 31083 ACCAGCGGCGCTTTGTTTTCAGGCCAGATCACTGCGATATCATTGGTCGTGCCGTAATCG 31142 Query 65268 CCGCTGCCGGTCTTATCACCCACAGTCCACGACGTCGGTAAGCCGGCCCGAATGCTGGCT 65327 ||||||||||| ||||| || ||| |||| | || |||||| || || || ||||| Sbjct 31143 CCGCTGCCGGTTTTATCGCCGACAATCCAGGTCGCCGGTAATCCTGCGCGGATGCTCATC 31202 Query 65328 GCGCCGGTCGTATTGCCTTTGAGCCACGTCACCAACTGCGCCCGCTGGGTTTCGCCCAGC 65387 |||||||| ||||| ||||| | ||| ||||| || || ||||| | ||| ||||| Sbjct 31203 GCGCCGGTGGTATTCCCTTTCATCCATTCCACCAGTTGTGCGCGCTGCGGTTCCGCCAGC 31262 Query 65388 GCATGACCCAGCGTAAGCTGACGCAACGTCTGCGCCATCGCCCGCGGCGTGGTGGTGTCT 65447 || |||||||| || ||| || |||||||||| ||||| | |||||||| Sbjct 31263 GCGGAGCCCAGCGTCGCGTGTTGCAGGCTCAGCGCCATCGCACGCGGTGACGTGGTGTCG 31322 Query 65448 CTCGGGTCGCCGGGAATGGCGGTATTCAGCGT 65479 | | ||||| |||||||||||||||||||| Sbjct 31323 CGCTCATCGCCCGGAATGGCGGTATTCAGCGT 31354 >seq25848 Length=116905 Score = 102 bits (112), Expect = 5e-17 Identities = 232/344 (67%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 44708 GCCGATCATTTGCATGGTGCCGCCCTGGCT-GACGATAATTTCCGTCGTGTAACGTTCTA 44766 ||| | ||| ||||| |||||| || || ||| ||||||||| |||||||| || | Sbjct 108321 GCCCAGCATCTGCATCGTGCCGTT-TGCCTTGACCGCAATTTCCGTGGTGTAACGGTCGA 108263 Query 44767 CACCG-GCGTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGAGAA 44825 ||| ||| |||| ||| || ||||| | || | |||||||||||||| | | Sbjct 108262 TACCCTGCG-CATCCTGCCATTTGCGGGTCTGCAGCTGGCCTTCGATGTAGACTTTTGCG 108204 Query 44826 CCTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTATGC 44885 || || | || |||| |||||||| || || |||||||||| || || ||| Sbjct 108203 CCCTTGGTCAGGTATTCACCGGCAATTTCGGCCAGCTTTCCGAACACGACCACGCGGTGC 108144 Query 44886 CATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGTCGCGCCATGATTCATTCGTTGCG 44945 || || |||| || ||| | ||| || ||||| ||||| ||| ||| || Sbjct 108143 CACTCGGTTTTTTCGCGCTGCTCGCCGGTGGCTTTGTCACGCCAGTTTTCGGACGTGGCC 108084 Query 44946 ATGCTGAGTCTTCCGACCGCTCCGCCATTTGGTATATACCTGATCTCCGGGTCTTGCCCC 45005 | | || || | ||||| ||||| || || || || | | |||||| | || || Sbjct 108083 AGCGTCAGGCTCGCCACCGCGCCGCCGTTCGGCATGTAGCGCAGCTCCGGTGCCTGACCT 108024 Query 45006 AGGGTACCAATCAGGATGACTTTGTTTACACCGCGTTGTGCCAT 45049 | |||| | | |||||||||||| | || |||| |||||| Sbjct 108023 AAATTACCCACGATGATGACTTTGTTAATTCCACGTTCTGCCAT 107980 >seq785 Length=396209 Score = 96.9 bits (106), Expect = 2e-15 Identities = 72/83 (87%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 98311 AAATATGGTGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTC 98370 |||| ||||||||| | | ||||||||||| | |||| ||||||||||||||| |||| Sbjct 187890 AAATTTGGTGGCCCTTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTC 187949 Query 98371 TAACC-ACTGAGCTAAAGGGCCG 98392 ||||| ||||||||||||||||| Sbjct 187950 TAACCAACTGAGCTAAAGGGCCG 187972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330621603904444