Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq4062 154 3e-32
seq48539 143 6e-29
seq8521 138 3e-27
seq15643 136 9e-27
seq8056 116 9e-21
>seq4062
Length=67394
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
|| || || || || || || || ||||| || ||||||||||| || | | || ||
Sbjct 48381 AGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTCCTG 48322
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || || ||||||||||| |||||||||||||| | | ||||||||||
Sbjct 48321 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATTCCTTCC 48262
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| ||||| || || |||||| || | | |||| ||| ||| || || || ||
Sbjct 48261 TTATCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCACCTCGAGGGTG 48202
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||||||||| ||||||||||||| ||||||
Sbjct 48201 ATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 48164
>seq48539
Length=7100
Score = 143 bits (158), Expect = 6e-29
Identities = 162/215 (75%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | ||||| ||||| ||||||||||| ||||| |||| | || | |||||
Sbjct 6699 GAGGACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGTCCATC 6640
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
|| | ||||| || |||||||| | ||||||||| || | | ||||||||||||
Sbjct 6639 CTCCAACTGCTTT--CCTGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTG 6582
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
||||| || || ||||||| | || | |||| ||| ||| ||||| |||||||||
Sbjct 6581 TCTTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAACTTCTAGAGTAATA 6522
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || ||||| ||||||| ||||||
Sbjct 6521 GTCTTTCCGGTAAGGGTCTTTACGAAGATCTGCAT 6487
Score = 105 bits (116), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | ||||| || ||||| ||||| |||||||| || | | || | |||||
Sbjct 6927 GAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATC 6868
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
||| | ||||| || || ||||| | ||||||||| || | | |||||||||||
Sbjct 6867 TTCCAATTGCTTT--CCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTG 6810
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
|||||||| || || ||| | || | | | ||||| || ||||| | || ||
Sbjct 6809 TCTTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATG 6750
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|||||||| || || ||||| || || | |||||||
Sbjct 6749 GTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCATT 6714
Score = 98.7 bits (108), Expect = 2e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || | || || || || || |||||||| |||||||||| | ||||
Sbjct 6477 GAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCG 6418
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| ||||| | || || ||||| || ||||||||||| || | | ||| |||||
Sbjct 6417 GCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCTTC 6358
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
|| |||||||||||| || || | || | | || ||| ||| || || | |||
Sbjct 6357 TTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGT 6298
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || ||||| || | || |||||||| | |||||| ||
Sbjct 6297 TATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTT 6256
>seq8521
Length=40141
Score = 138 bits (152), Expect = 3e-27
Identities = 160/214 (75%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || || ||||| || ||||||||||| |||| | ||| | ||||||
Sbjct 2458 AGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCT 2399
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| ||||| ||||| | ||||||||| || | | ||| |||||||| |
Sbjct 2398 TCAAGCTGCTTT--CCGGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTGT 2341
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || ||||| |||||| |||| | ||||| || || || || || ||||| |
Sbjct 2340 CCTGGATTTTGGCCTTGACATTCTCAATACTGTCCGAGGGTTCAACCTCCAGTGTAATGG 2281
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || | |||||| || |||| ||||||
Sbjct 2280 TCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 2247
Score = 138 bits (152), Expect = 3e-27
Identities = 160/214 (75%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| ||||| || ||||||||||| ||||||||||| || | | || | ||||||
Sbjct 2686 AGGACGAGATGGAGTGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTACGTCCATCT 2627
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| ||||||||||| | ||||||||| || | | || |||||||| |
Sbjct 2626 TCCAGCTGCTTT--CCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGT 2569
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
|||| || || || ||| |||||| | |||| || ||| || || || || || |
Sbjct 2568 CTTGGATCTTGGCCTTAACATTCTCTATGGTGTCGGAGGGCTCAACCTCGAGGGTGATTG 2509
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || || || |||||||| ||||||| ||||||
Sbjct 2508 TCTTCCCAGTCAGAGTCTTGACGAAGATCTGCAT 2475
Score = 118 bits (130), Expect = 2e-21
Identities = 160/221 (72%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| | |||||||| ||||| || || ||||| || || | | || |
Sbjct 2237 GAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACG 2178
Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
|||||||| || ||||| ||||||||||| | ||||||||| || | | ||| |||
Sbjct 2177 TCCATCTTCCAGCTGCTTT--CCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATACCT 2120
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| || || || || ||| ||| |||| | |||| || ||| || || ||
Sbjct 2119 TCCTTATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCAACCTCTAGG 2060
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||| || || ||||||||||| | ||||||
Sbjct 2059 GTGATTGTCTTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 2019
Score = 113 bits (124), Expect = 1e-19
Identities = 155/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | ||||| || |||||||||||||||||||| |||| | || | |||||
Sbjct 2915 GAGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCATC 2856
Query 151952 TTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
||| | ||||| || || ||||| | ||||||||| || | | ||| ||||||||
Sbjct 2855 TTCCAATTGCTTT--CCTGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTA 2798
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
|| || || || ||| ||| |||| | ||||||| ||| || || || || ||
Sbjct 2797 TCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAACCTCTAGGGTGATG 2738
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || || || || |||| ||||||
Sbjct 2737 GTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 2703
>seq15643
Length=27379
Score = 136 bits (150), Expect = 9e-27
Identities = 162/220 (74%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||| || || | ||||| || ||||| || ||||| |||||||| | | || |
Sbjct 12265 GAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAAAGGGTACG 12206
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || ||| ||||||||||| | ||||||||| || | | |||||||||
Sbjct 12205 TCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTC 12146
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
|| ||||| || || ||||||| | || | |||| || |||||| ||||| ||
Sbjct 12145 TTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTACCTCAAGGGT 12086
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| ||||| ||||| || ||||||||||| | |||||||
Sbjct 12085 GATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATT 12046
>seq8056
Length=34938
Score = 116 bits (128), Expect = 9e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955
||||||||||| ||||| ||||| || |||||||| |||| | || | ||||||||
Sbjct 32339 ACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGTACGTCCATCTTCC 32280
Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015
|| || || ||||| || | ||||||||| || | | ||| |||||||| ||||||
Sbjct 32279 AGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGGATGCCTTCCTTATCTTGA 32220
Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075
||||| ||||| | || | | ||||| || || || || || || || |||
Sbjct 32219 ATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGACCTCCAGGGTGATTGTCTTG 32160
Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || | ||||| ||||||| ||||||
Sbjct 32159 CCAGTTAATGTCTTGACGAAGATCTGCAT 32131
Score = 102 bits (112), Expect = 2e-16
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || | ||| || || ||||| || ||||| |||||||||| | || |
Sbjct 32121 GAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCG 32062
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|||||||||| ||| || ||||||||||| | || || |||| | ||||||||
Sbjct 32061 ACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTC 32002
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
|| ||||||||||| || ||| | || | | ||||| ||| || || | ||
Sbjct 32001 TTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGT 31942
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || | ||| |||||||| | ||||||
Sbjct 31941 GATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1152803204331614
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