Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq48539 104 2e-17 seq8056 98.7 8e-16 >seq48539 Length=7100 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| ||||| || ||||| ||||| ||||| || || || |||| ||| || Sbjct 6256 AACATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAGCCT 6315 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 |||| | ||| | || || ||||||| ||||||||||| | || ||| Sbjct 6316 TCCGATACGATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCAGAT 6375 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 || || ||||| |||| || ||||| || |||||||| ||| | ||||||| Sbjct 6376 CAGCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGATTAC 6435 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||||| ||||| ||||| || || || || ||| | ||||| || || |||| Sbjct 6436 AATATCCAAAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGAGGAGGCA 6487 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| ||||||||||| || | || ||||||||||| ||| ||||| |||||| Sbjct 6714 AATGCAGATTTTTGTCAAGACCCTTACTGGCAAAACCATCACCTTGGAAGTTGAACCCTC 6773 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | || || || ||| ||||| ||||| ||||| ||||| Sbjct 6774 AGATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCA 6833 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || ||| | || | ||| || || |||||||||||| || | | || || || Sbjct 6834 GCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCGGACTACAA 6893 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| || || || || || || || | |||||||| ||||| Sbjct 6894 CATTCAAAAGGAGTCAACCCTTCACTTGGTCCTCCGTCTGCGTGGTGG 6941 >seq8056 Length=34938 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| || ||||| |||||||| || || || || |||| || ||| Sbjct 31903 ATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTCA 31962 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | ||||| |||||| ||||||||||| |||| |||||| Sbjct 31963 GATACGATCGAAAATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCAA 32022 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | ||||| | || || |||||||| |||||| | || | ||||||| ||| Sbjct 32023 CAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAAT 32082 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || || ||||| ||| | ||||| || || |||| Sbjct 32083 ATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTCTCCGAGGAGGCA 32131 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || ||||| || || || ||||| || || ||| |||| |||||| Sbjct 32131 ATGCAGATCTTCGTCAAGACATTAACTGGCAAGACAATCACCCTGGAGGTCGAACCCTCA 32190 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || |||||| || || |||||| | ||| ||||| Sbjct 32191 GATACTATTGAAAACGTCAAGGCCAAAATTCAAGATAAGGAAGGCATCCCCCCAGATCAG 32250 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||| | |||| || ||||| || |||||||| || | |||| || || Sbjct 32251 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACGTACCCTCTCCGACTACAAC 32310 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||||||||| || ||| | || |||||||| || || || Sbjct 32311 ATTCAGAAAGAATCTACCCTTCATCTTGTATTGCGTCTCCGAGGAGG 32357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421457336520784