Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq6760 279 1e-70 seq725 264 3e-66 seq223 111 4e-20 >seq6760 Length=71796 Score = 279 bits (308), Expect = 1e-70 Identities = 360/497 (72%), Gaps = 0/497 (0%) Strand=Plus/Plus Query 20906 TGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAAT 20965 |||||||| || || ||||| || || || || || || || | || || ||||| | Sbjct 16337 TGTTTGGTCTCGATATAAATCCTTCCGATGTACTCACCTAGCACGCCAATACCTATTAGC 16396 Query 20966 TGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTT 21025 || | ||||| |||||||||| |||||| | | |||||| || ||| |||| || Sbjct 16397 TGGATTCCACCGAGGAAAAGAATAGAAACCAAGATAGACGGATAACCATGAACGGGGTTG 16456 Query 21026 CCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACCTGCAATA 21085 ||||| || | | ||||||||||| || ||||||| ||| |||| ||| || | | Sbjct 16457 CCAAAAATGAGGGTGTCAATAATCATATATACACCGTAGGCGAAAGACAGACCGGCCACA 16516 Query 21086 AACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCCTCC 21145 || | || || || ||||| || || || ||||| |||||||| || ||||| || || Sbjct 16517 AAAAGACCTATATACGTCCACATTCGCAGTGGAAAAGTTGAGAACGATGTTATGCCTTCG 16576 Query 21146 AGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCGTTCGGCA 21205 || || |||||||| | |||||| || || ||||| | |||||| |||||||| | Sbjct 16577 AGAGCAAGGTTCCACAGTTTCCAACCATTAAATTTTGTCGAACCGGCAACGCGTTCATCT 16636 Query 21206 CGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTTCATAAAC 21265 |||| ||||| ||||| || || || || |||||| || || || ||||| || Sbjct 16637 CGGGTATATTCGACAACTTCAGTGCGACCACCGACCCAAGACAGAACCCCTTTCATGAAT 16696 Query 21266 AAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAG 21325 ||||| ||||| || | || ||||| || || || || || |||||||| || Sbjct 16697 AAGTTTCGTTCAGGGAGCAACTTAATGTTTTCTACGACAGCGCGAGACATTAACCTGAAA 16756 Query 21326 TCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATAAAACCAC 21385 |||||||| ||||| || || || || |||||||| | || || ||||||||||||||| Sbjct 16757 TCGCCAACGTTTTCCTCAATCTTAGGCTTGCTGATCATGTTATGGAGCTTATAAAACCAC 16816 Query 21386 TCAGCTGTCTTACGCTT 21402 ||||| | |||||||| Sbjct 16817 TCAGCGCTTTTACGCTT 16833 >seq725 Length=236385 Score = 264 bits (292), Expect = 3e-66 Identities = 553/820 (67%), Gaps = 28/820 (3%) Strand=Plus/Plus Query 34523 CGTCTGAGGAACGGAGAAGAGTCCGATACCCTGAAGACCGGAATCGAAGAGCTTGACGCT 34582 ||||| | ||||| || ||||| || || || || ||||| || ||||| |||| Sbjct 188784 CGTCTTAAAAACGGTGAGGAGTCGGACACGCTTAAAACCGGCATACCTGAGCTGGACGAA 188843 Query 34583 ATCACCGGAGGGATGAACGCAGAAGACCTTGTGATTATTGCTGCTCGTCCAGGTATGGGT 34642 || || || || ||||| || || || | || | |||||||| || |||||||| Sbjct 188844 ATTACAGGCGGACTGAACAACGAGGATCTGATCATCGTAGCTGCTCGCCCTGGTATGGGG 188903 Query 34643 AAAACCGAACTGGCGCTGAAGATAGCCGAAGGCGTGGCAAGTCGTGTTATTCCTGGTTCT 34702 |||||||| | || |||| | || ||||| || || || ||||| || || Sbjct 188904 AAAACCGAGTTTGCTCTGACCGTGGCTGAAGGTGTTGCGGAAAGTACTATTC--GGATC- 188960 Query 34703 GGCG---------TCCGGCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAG 34753 |||| | | |||||| ||| |||||||| |||||||||||||| ||| Sbjct 188961 GGCGATGAGGTGTTGCCGCGCGGCGTGCTGATTTTCAGCATGGAAATGAGCGCTCAGCAG 189020 Query 34754 GTTGTTGAGAGAGGGATTGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCG 34813 || | || | | | || ||||| || ||| |||| || ||||| || || Sbjct 189021 GTCATAGAACGCCAGTTGGCTGGCGCCTCAAACATGCCGGTGTCTGCCCTGCGCAAACCT 189080 Query 34814 TCACGTATGGACGATGAAGGATGGGCGAGAGTTGCAAGCGGGATGAAG----TTGCTGGC 34869 ||||||||| ||||||||| ||||| | | | | || || ||| | ||||| Sbjct 189081 TCACGTATGAACGATGAAGACTGGGCACGCATATCGATGGGCATTAAGCGTTTATCTGGC 189140 Query 34870 AGATCTGGATGTGTGGGTAGTTGACGCATCGCGTTTATCTGTCGAAGAAATCAGGTCCAT 34929 ||| | |||||||| || || || ||| | | | || | ||| | | || Sbjct 189141 ----CTGCAGGTGTGGGTTGTCGATGCGTCGAAACTGACCATTGAGCAGATCCGCGCGAT 189196 Query 34930 TTCCGAACGCCACAAGCAGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCGG 34989 | | ||| | ||||| | | | | || ||||| || || || || || || || || Sbjct 189197 TGCGGAAAGGCACAAACGGAAATACCCAAATCTATCTCTCATCCTGTGCGATTACCTTGG 189256 Query 34990 GCTAATTGAGAAACCAAAAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTAG 35049 || || || || || || ||||| || ||||| || || || || |||||||| | Sbjct 189257 CCTGATCGAAAAGCCGCGTGCTGAACGAAACGACCTGGCGATCGCCCACATCTCCGGCGG 189316 Query 35050 CCTGAAAGCGATGGCGAAAGACCTGAAAACTCCAGTTATCTCATTAAGCCAGCTCTCCCG 35109 | ||||| |||||||| |||||||| || ||||| || ||| | || ||||| ||||| Sbjct 189317 CATGAAACGCATGGCGAAGGACCTGAAGACGCCAGTGATGTCACTTAGTCAGCTGTCCCG 189376 Query 35110 CGATGTTGAGAAGCGGCCAAAC------AAGCGCCCGACAAACGCAGATTTGCGTGATTC 35163 ||| || |||||||| ||||| || || ||| ||| | || |||| || Sbjct 189377 CGACGTGGAGAAGCGACCAAAGGGCCAGAAACGGCCGGTTAACTCTGACCTGCGCGACGG 189436 Query 35164 AGGAAGCATTGAACAGGACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGA 35223 || ||||| || |||||||| ||| || ||||| || || |||| ||| ||||| Sbjct 189437 GGGGAGCATCGAGCAGGACGCCGACGGGATTTATATGCTGTACCGCGAAGGGGTGTATGA 189496 Query 35224 -CGAGAACAGTAGCGCCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCT 35282 | ||| || |||||||| || ||||||||||||||||| || ||||| ||||| Sbjct 189497 ACCCGAA-AGCCCTGCCGCGCCGTTCGCTGAAATCATCGTGACCAAGAACCGATTTGGTG 189555 Query 35283 CGCTTGGTACGGTTTACCAGCGGTTCTGCAACGGACACTT 35322 ||| ||||| |||||||||| |||| ||||| ||||| Sbjct 189556 AGCTCGGTACCGTTTACCAGCAGTTCAAAAACGGGCACTT 189595 Score = 239 bits (264), Expect = 1e-58 Identities = 485/708 (69%), Gaps = 13/708 (2%) Strand=Plus/Plus Query 23068 CATTCATCAATCAACCTTTTTGCCTCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTC 23127 |||||||||| || | || || || | || || ||||| | || ||||||||||| Sbjct 173927 CATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTT 173986 Query 23128 GGCTGAGGAACTTTGATGATCGGAGCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCC 23187 | ||| || ||||| || | || || || |||||| ||||| || ||||| || || Sbjct 173987 GCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCG 174046 Query 23188 CGGAGGAGTGCCTTAATGAATGAAAGGTGAGTTGCTTTTGTGGCTACTGCTGCCGGCTTA 23247 || || || | ||| || | | ||||| |||| || |||||| ||||| | ||| Sbjct 174047 CGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTG-TGCTGAC--CTTC 174103 Query 23248 -GGCTTGAATACTGGAG-GCTGCT-TCCCATTCTTCCTGCAAGCTTCATCCATT-AACTT 23303 ||| ||||| | ||| | |||| ||||| |||| | || ||| Sbjct 174104 TGGCGCTCATACTTTGGCGCTTCGATCCCTCTCTTCGC-CAAGGACTGTGAATGCAACCG 174162 Query 23304 CCAGTTTTCCTCATGCCGCCGATTAGTCATCTTCTGGATGGCGGAGTAAATCTTCGTCTC 23363 ||||||| | ||| || ||| ||| || ||| || | ||| || || | || Sbjct 174163 ATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGATCGCCGTGTAGATTTTGGCTTC 174222 Query 23364 GGTAATATCCTTCAACTGCATCCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTT 23423 ||||||||||||||||| || |||| |||||||| ||||||||||| ||||| || || Sbjct 174223 GGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTTTT 174282 Query 23424 GTCATCATCCAGCGACTTCTTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCTCCTC 23483 |||||||||||| || ||||| | ||| || || |||||||| | ||||||||| || Sbjct 174283 GTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCTTC 174342 Query 23484 AAAAGTCATGCCAGGCGTCTCTCCTAATTTATTTACCCTCCATGCTTCGGCCTTCAGCTT 23543 |||||| | | |||| || || | | || | ||| || | || || Sbjct 174343 AAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTTTT 174402 Query 23544 GTCATGAAGCT-CTGTGGCCTGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTT 23602 ||| || |||| |||| |||| ||| |||| | |||||||||||| | |||| ||||| Sbjct 174403 GTCGTGCAGCTCCTGT-GCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCTTT 174461 Query 23603 TGCCGTTCGGCAATGTGAAACTGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTT 23662 ||| ||||| | ||| || ||||||||| | | |||||| ||||| | ||||| | Sbjct 174462 GCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGACATGT 174521 Query 23663 CAGTTCCTCTGTTATGTCATCACCCGCGCTCACTTGGACAGTATGCAGCGGAGATTGAAG 23722 |||||| ||| |||||| | ||||| |||||| | | ||| | || Sbjct 174522 TTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTATTCAG 174578 Query 23723 TGCCGCAACGCAGGCTTGTCGTGTGGTGAGGTAAGGGGATTTAGGTTT 23770 ||| |||| || ||||| || ||| || ||||||||| || ||||| Sbjct 174579 TGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTT 174626 Score = 158 bits (174), Expect = 3e-34 Identities = 152/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 22530 GTGGGACATATTTGGGACAGAAGTACCAAAAATCGAGTCAATTTGTCGAGCATGTTCAGT 22589 |||||||| ||||||||||||| |||||||| | ||| || || || || || || Sbjct 175480 GTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGT 175539 Query 22590 CAGGTGATTTGGTGCCAGATGAGCATATCGGCGAACCATTTCGATAGACTCCCAGCCACC 22649 | ||||| || |||||||| || ||||| || ||||| ||||| ||||||||||| || Sbjct 175540 TAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCGCC 175599 Query 22650 CATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAACTTGCCCACGTGTG 22709 ||||||||| | || || | ||| || || ||||||| | ||| |||||||| ||||| Sbjct 175600 CATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTG 175659 Query 22710 CCTCAGGTCATGAAA 22724 |||||||| ||||| Sbjct 175660 TCTCAGGTCGTGAAA 175674 >seq223 Length=511576 Score = 111 bits (122), Expect = 4e-20 Identities = 235/347 (68%), Gaps = 3/347 (1%) Strand=Plus/Plus Query 26637 GCCACCAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGATC 26696 ||| || ||||| |||||||| || || ||| ||||| ||||||||| ||| | || Sbjct 459543 GCCGCCGAGCATCTGCATGGTGCCGCCCACGTTAACGACGACTTCGGTGGTGTATTTTTC 459602 Query 26697 CT-GTCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAG 26755 | | || | |||| |||||| | || ||| | |||||| | || |||| || Sbjct 459603 AACGCCAGCCT-GATCGGTCCATTTACGGGTTTGCAGTGCGCCTTCGATGTAGACCTGAG 459661 Query 26756 AACCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGT 26815 ||||||| ||| || |||| || | |||||| | ||| ||| || |||||||||| Sbjct 459662 AACCTTTCTTCAGGTATTCGCCTGCGACTTCTGCTAATTTGCCGAACAACACCACACGGT 459721 Query 26816 GCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAG 26875 |||| ||||| | || || ||||| || || || |||||||| || ||||| | Sbjct 459722 GCCATTCCGTTTTTTCTTTCTGCTCGCCGGTGGCTTTGTCACGCCAGCTCTCAGACGTTG 459781 Query 26876 CAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGC 26935 | | || | ||| |||| | || | | | || || | || ||| || || || Sbjct 459782 CCAGAGTGATGTTGGCAACCG-CGCCGCCGTTAGGCATGTAGCGGACTTCCGGGTCTTGT 459840 Query 26936 CCAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 26982 || || ||| | | || || || |||||||||||||| ||||| Sbjct 459841 CCCAGATTACCGACGAGAATAACTTTGTTTACGCCTCTGCTGGCCAT 459887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129190312964740