Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4062 152 4e-32 seq48539 129 4e-25 seq8521 129 4e-25 seq223 118 8e-22 seq15643 116 3e-21 seq8056 104 2e-17 >seq4062 Length=67394 Score = 152 bits (168), Expect = 4e-32 Identities = 169/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 || |||| ||||||||| || ||| |||||| ||||||||||| || | ||| | Sbjct 48381 AGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTCCTG 48322 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| ||||| ||||||| | |||||| |||| || | |||||| Sbjct 48321 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATTCCTTCC 48262 Query 44240 TTTTCCGTTATCTTCTGCTTCA-ATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 || || ||||| ||| | |||||| |||||||| | | |||||||| | || Sbjct 48261 TTATCTTGGATCTTGGCCTTGACATGTTCG-ATGGTGTCAGAAGGCTCCACCTCGAGGGT 48203 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || ||||| ||||||||||||||||||||||| ||||||||| Sbjct 48202 GATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGATG 48160 >seq48539 Length=7100 Score = 129 bits (142), Expect = 4e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | | ||||| ||| || ||| ||||||||||| |||||||| Sbjct 6489 CATGCCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATC 6430 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || |||| |||| |||||| || || || |||| | ||||||||||| Sbjct 6429 GGAGAGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGG 6370 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||| || || || || ||||| || | || || |||| | || Sbjct 6369 AGGGATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTC 6310 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342 |||||||| || |||||||| || || | ||| |||||||| || |||||| ||| Sbjct 6309 CACCTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTTGT 6254 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | |||| |||||| || || |||||||| ||||| || Sbjct 6717 CATTCCACCACGCAGACGGAGGACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTC 6658 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || |||| |||||| || || |||||||| | ||||||||||| Sbjct 6657 GGAAAGGGTGCGTCCATCCTCCAACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGG 6598 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| || ||||| || | || | || ||||| | | || Sbjct 6597 AGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTC 6538 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | ||||| |||||||| || |||||||| |||||||| |||||| Sbjct 6537 AACTTCTAGAGTAATAGTCTTTCCGGTAAGGGTCTTTACGAAGATCTGCATG 6486 Score = 107 bits (118), Expect = 1e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | ||| | | |||| |||||| || ||||||||| |||||||| Sbjct 6948 TTGCATTCCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTA 6889 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || || | || |||| ||||| || ||||||||||| | ||||||||| Sbjct 6888 GTCCGAAAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATC 6829 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | |||||||| || ||||| ||| | || | ||||| || | || Sbjct 6828 TGGGGGAATTCCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGG 6769 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || || || || || || |||||||| || || || ||||| Sbjct 6768 TTCAACTTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCAT 6715 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || || ||||| || ||||||||||| | ||||||||||| || | ||||||||| Sbjct 7097 TCTTCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTG 7038 Query 44243 TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 || ||||| |||| || || | ||||| || | || || ||||| | || || Sbjct 7037 TCTTGGATCTTG-GCTTTAACATTTTCAATGGTATCTGAGGGCTCAACCTCGAGTGTTAT 6979 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || ||||| |||||||||||||| Sbjct 6978 GGTTTTACCAGTCAGAGTCTTGACGAAGATTTGCAT 6943 >seq8521 Length=40141 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| || ||||| || || | ||| || | || ||| Sbjct 2227 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGTCCATCTTCC 2168 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| |||||||| | ||||||||||| || | ||||||||| ||| Sbjct 2167 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGG 2108 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | ||| | || ||||| | || || ||||| | || || ||||| Sbjct 2107 ATCTTG-GCTTTCACATTCTCAATTGTGTCAGAGGGCTCAACCTCTAGGGTGATTGTCTT 2049 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||||||||| || ||||| Sbjct 2048 GCCGGTAAGGGTCTTCACGAAAATCTGCAT 2019 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| ||||||||||| |||| ||| ||| | || || Sbjct 2455 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCA 2396 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| |||||||||||||| | ||||||||||| || | ||||||||| ||| Sbjct 2395 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTGTCCTGG 2336 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||| | | | || |||| | || ||| ||||||| ||||| ||||| Sbjct 2335 ATTTTGGCCTTGACATTCTCAATACTGTCCGAGGGTTCAACCTCCAGTGTAATGGTCTTG 2276 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| || ||||| ||||| Sbjct 2275 CCGGTCAAAGTCTTGACAAAGATCTGCAT 2247 Score = 120 bits (132), Expect = 2e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| || ||||||||||| || | || || | || ||||||||||| ||||| || Sbjct 2666 CTCTTTCTGGATGTTGTAGTCAGAAAGGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAA 2607 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| | ||||||||||| || | ||||||||| || ||||| ||| || | Sbjct 2606 GATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTGGCCTT-AACAT 2548 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || |||||||||||| || || ||||| | || || ||||| || || || ||||| | Sbjct 2547 TCTCTATGGTGTCGGAGGGCTCAACCTCGAGGGTGATTGTCTTCCCAGTCAGAGTCTTGA 2488 Query 44325 CGAAGATTTGCAT 44337 ||||||| ||||| Sbjct 2487 CGAAGATCTGCAT 2475 Score = 118 bits (130), Expect = 8e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | |||| |||||| || ||| |||||||||||||| || Sbjct 2933 CATTCCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTC 2874 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || | || |||| ||||| || ||||||||||| | ||||||||||| Sbjct 2873 GGAAAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGG 2814 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||||||| ||| ||||| |||| | ||| | || ||||| | || | Sbjct 2813 GGGGATACCTTCCTTATCCTGGATCTT-GGCTTTCACATTCTCAATTGTGTCTGAGGGCT 2755 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || || ||||| || || ||||| ||||| Sbjct 2754 CAACCTCTAGGGTGATGGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 2703 >seq223 Length=511576 Score = 118 bits (130), Expect = 8e-22 Identities = 318/484 (66%), Gaps = 2/484 (0%) Strand=Plus/Plus Query 6439 CCTCCGGGAAATTCCCAATCTATGTCCACGCCGTCGAAGAACTTCCAAGTTTCCAGAAAT 6498 || || ||||||||||| || || ||||| ||||| ||||||||||| |||| ||| ||| Sbjct 113498 CCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCAGGTTTGCAGGAAT 113557 Query 6499 TCTTCGACGCTCTCTACGAACACCTTTCTTTTAATCGTGTCGTTGAGCTGGTAAAAGGGA 6558 |||| || ||||||| || | | || | | || || | || || || Sbjct 113558 TCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGCCTTATCCTTCATGAAATAGAACGGG 113617 Query 6559 TCGCTCAGCGTCCACCCACCGATCGAGGGCAGGATGGTCAGATGCGGATTGTGTTTTCGT 6618 || || |||||| |||||||| || || | || |||| | |||| | |||| Sbjct 113618 TCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGGATAGGCTTTTTTC 113677 Query 6619 ATGGCCATAAGCTGACCGAAATTACCCTTGTACATTTCCGAGTAGGCCTCGACGCCCTTC 6678 | ||||| |||||||| |||||||| || || | | || || | |||||| | | Sbjct 113678 AGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTCACTGACGCCTTGC 113737 Query 6679 TGGGGTTTTTGTAGTGCGCCCCATATATCGTGTATGGACACCTTGAAGTCGTCTCGTCCC 6738 || || | || | || |||| ||||||||| | || || || || | || ||| Sbjct 113738 TGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAAATCCTGACGCCCC 113797 Query 6739 TCGCACGATCGCTGCAGAGCTTCGAACGAGCCCGGCACCTGTTTCAGAGCGTCGTTGATA 6798 | || | || |||| || | || |||| | ||| | | |||||| || Sbjct 113798 GCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTCAATGCTTTTTAAACTGTCGTTAATC 113857 Query 6799 CCATCCCCTCCGCACATGGGCACGAATCCGTACAGCAGATGTGTGAGATTGGGAATGGGG 6858 || ||||| ||||| || ||| ||| ||||||| | |||||| || || | ||| Sbjct 113858 CCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAGGTTCTGCGCAGGG 113917 Query 6859 ATTCTGTCGGCGG-GAAACTGTCTGTCGTAAACACCCCACTCCACGAAGTAAGCTCCGAT 6917 ||| | || ||| ||| | | | | || || |||||||| || || || || || | Sbjct 113918 ATTTTATCCACGGAGAATCCG-CGACCATACACGCCCCACTCAACAAAATATGCGCCAAC 113976 Query 6918 GACC 6921 |||| Sbjct 113977 GACC 113980 >seq15643 Length=27379 Score = 116 bits (128), Expect = 3e-21 Identities = 191/273 (70%), Gaps = 7/273 (3%) Strand=Plus/Minus Query 44086 AAAATTACATGATTTTTA--TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTG 44143 ||||||||| ||| | |||| || |||| |||| | ||| | |||||| ||| Sbjct 12300 AAAATTACAATGTTTGAAAGTTTCTAACCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTG 12241 Query 44144 CTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCA 44203 |||||| ||||| |||||||| | || || | || || ||||| || ||||| Sbjct 12240 GACTCCTTCTGGATATTGTAATCTGAAAGGGTACGTCCATCCTCGAGCTGTTTTCCGGCG 12181 Query 44204 AAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAAT 44263 |||||||| | ||||||||||| ||| | ||||| || || ||||| || | Sbjct 12180 AAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCTTTGACA 12121 Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 || | || ||||| | || || ||||| | || || || || ||||| ||||||||| Sbjct 12120 TTTTCGATAGTGTCAGAGGGCTCTACCTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTC 12061 Query 44324 ACGAAGATTTGCATGATGTG---AATGAAAATA 44353 ||||| || ||||| |||| | |||||||| Sbjct 12060 ACGAAAATCTGCAT--TGTGGCCACTGAAAATA 12030 >seq8056 Length=34938 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | ||| || || ||||| || || || || |||||||| || Sbjct 32361 CATACCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTC 32302 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || | || ||||||||||| || || || ||||| | ||||||||||| Sbjct 32301 GGAGAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGG 32242 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || || || ||| | || | || || || | || ||| Sbjct 32241 GGGGATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTC 32182 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| || || ||||| || || | ||||| |||||||| |||||| Sbjct 32181 GACCTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCATG 32130 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | | ||||| || || || |||||| ||||| |||||||| Sbjct 32133 CATGCCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATC 32074 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || | || || || || ||||| | ||| || ||||| | Sbjct 32073 GGAAAGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGG 32014 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||||| || || || ||| ||| | || | || || || | || || Sbjct 32013 AGGAATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTC 31954 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||||||| || ||||||||||| || | || |||||||| || |||||||| Sbjct 31953 AACCTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCATGAT 31900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359688398878578