Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq15643 172 1e-37
seq8056 159 8e-34
seq4062 158 3e-33
seq8521 150 4e-31
seq48539 127 5e-24
>seq15643
Length=27379
Score = 172 bits (190), Expect = 1e-37
Identities = 158/200 (79%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || || ||||| |||||||| ||||| || ||| |||
Sbjct 12050 CAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTTGAGGTAGAGCCCTCTGAC 12109
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || |||||| ||||| || |||||||||||||||||||| || |||||
Sbjct 12110 ACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCTCCAGATCAGCAG 12169
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | ||||||||||||||||||||||| |||||| | || ||| | ||||| || ||
Sbjct 12170 AGGTTGATCTTCGCCGGAAAACAGCTCGAGGATGGACGTACCCTTTCAGATTACAATATC 12229
Query 178104 CAAAAAGAATCAACACTGCA 178123
|| || || || ||||| ||
Sbjct 12230 CAGAAGGAGTCCACACTTCA 12249
>seq8056
Length=34938
Score = 159 bits (176), Expect = 8e-34
Identities = 156/201 (78%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||||||| | || ||||| |||||||| | ||||| || ||||||
Sbjct 31906 CAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTCAGAT 31965
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || || ||||| |||||||||||||| |||||||| || |||
Sbjct 31966 ACGATCGAAAATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCAACAA 32025
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| |||||||| | |||||||| | || ||| ||||||| || ||
Sbjct 32026 CGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAATATC 32085
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| || || || || || |||
Sbjct 32086 CAGAAGGAGTCGACCCTCCAT 32106
>seq4062
Length=67394
Score = 158 bits (174), Expect = 3e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || ||||| || || || ||||||||||||||||| || |||
Sbjct 48167 CAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGCCTTCTGAC 48226
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| | ||||| ||||| || || || ||||||||||| || ||||||||
Sbjct 48227 ACCATCGAACATGTCAAGGCCAAGATCCAAGATAAGGAAGGAATCCCCCCAGACCAGCAG 48286
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || ||||||||||| || ||||| |||||||| ||||| ||| | || || ||| ||
Sbjct 48287 AGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCAGGACACTTTCGGACTACAACATC 48346
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| || || || || || || || || |||| ||
Sbjct 48347 CAGAAGGAGTCCACCCTCCACCTGGTGCTGAGGCT 48381
>seq8521
Length=40141
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||||| || || || || |||||||||||||| || ||| |||
Sbjct 2478 CAGATCTTCGTCAAGACTCTGACTGGGAAGACAATCACCCTCGAGGTTGAGCCCTCCGAC 2537
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || ||||| || ||||| ||||| || || || || |||||
Sbjct 2538 ACCATAGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAGCAG 2597
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | |||||||||||||| ||||| ||||||||| | || ||| | || || ||| ||
Sbjct 2598 AGGTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGACGTACCCTTTCTGACTACAACATC 2657
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| ||||| || ||||| ||||| ||
Sbjct 2658 CAGAAAGAGTCTACACTCCATCTCGT 2683
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || || || || |||||||| ||||| || ||| |||
Sbjct 2022 CAGATTTTCGTGAAGACCCTTACCGGCAAGACAATCACCCTAGAGGTTGAGCCCTCTGAC 2081
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| ||||| ||||| || ||||| ||||| || || |||||
Sbjct 2082 ACAATTGAGAATGTGAAAGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAGCAG 2141
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | |||||||||||||| ||||| ||||||||| | || || | || |||||| |
Sbjct 2142 AGGTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGACGTACCCTCTCTGACTATAACATT 2201
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 2202 CAGAAGGAGTCCACTCTTCA-CTTG 2225
>seq48539
Length=7100
Score = 127 bits (140), Expect = 5e-24
Identities = 152/205 (74%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || ||||| || || || || || || || || |||
Sbjct 6490 CAGATCTTCGTAAAGACCCTTACCGGAAAGACTATTACTCTAGAAGTTGAGCCTTCTGAC 6549
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || |||||| ||||| || ||||| |||||||||||||| || |||||
Sbjct 6550 ACAATTGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCAGCAG 6609
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | |||||||| ||||| ||| | || |||||| | || ||| |||| || || ||
Sbjct 6610 AGGTTGATCTTCGCAGGAAAGCAGTTGGAGGATGGACGCACCCTTTCCGACTACAATATC 6669
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
||||||||||| || || || ||||
Sbjct 6670 CAAAAAGAATCTACCCTTCA-CTTG 6693
Score = 123 bits (136), Expect = 6e-23
Identities = 151/205 (74%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| | || || || ||||| || | |||||||| || ||
Sbjct 6262 CAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAGCCTTCCGAT 6321
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || ||| ||||| ||||||||||| |||||||| || |||||
Sbjct 6322 ACGATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCAGATCAGCAG 6381
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || || ||||| || || ||| | ||||| || | || || ||||||| || ||
Sbjct 6382 AGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGATTACAATATC 6441
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
||||| ||||| || || || ||||
Sbjct 6442 CAAAAGGAATCCACCCTCCA-CTTG 6465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202669586571796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |