Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq48539 118 1e-21
seq8521 107 2e-18
seq8056 104 2e-17
seq4062 104 2e-17
seq15643 84.2 2e-11
>seq48539
Length=7100
Score = 118 bits (130), Expect = 1e-21
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | ||||| || || ||| ||||| || || || || |||||
Sbjct 6486 GCCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGA 6427
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|||||| || |||| || | ||||||||| ||||| ||||| | ||| || || | ||
Sbjct 6426 GAGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGG 6367
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | || |||| | ||| ||||||| | ||| | | || ||| | |||||
Sbjct 6366 GATACCTTCTTTGT-CTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCA 6308
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||||| |||||||| || || |||| || || |||||||||||||||||
Sbjct 6307 CCTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTT 6256
>seq8521
Length=40141
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || ||| ||||||||||||||||||||| |||
Sbjct 2245 CCACCACGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 2186
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || |||||||| |||||||| |||| | ||| || || | |||
Sbjct 2185 AGGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGG 2126
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | ||||| ||| ||| || |||| | | ||||| | ||| |||
Sbjct 2125 ATACCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCAACC 2066
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | || || || || || || || ||||| ||||||||||||||
Sbjct 2065 TCTAGGGTGATTGTCTTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 2019
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||||| || ||||| || ||| ||||||||| ||||| |||||||||
Sbjct 2473 CCACCACGCAGACGTAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2414
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || |||||||| ||||| || |||| | ||| || || | |||
Sbjct 2413 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGGGG 2354
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | ||||||||| |||||| ||| | | | | |||| | || |||
Sbjct 2353 ATACCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATACTGTCCGAGGGTTCAACC 2294
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || |||| ||||| || || ||||||||
Sbjct 2293 TCCAGTGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 2247
>seq8056
Length=34938
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| || || ||||| || || || ||||||||||| |||||||||
Sbjct 32357 CCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAG 32298
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || ||||||||||| ||||| |||| | ||| || || | |||
Sbjct 32297 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 32238
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||| | | ||| |||| || | ||| | | ||| || | || ||
Sbjct 32237 ATGCCTTCCTTAT-CTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGAC 32179
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| || || || || || || | ||||| ||||| |||||||||
Sbjct 32178 CTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCATG 32130
>seq4062
Length=67394
Score = 104 bits (114), Expect = 2e-17
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || | | |||||| || || ||| ||||||||| ||||| ||||| ||
Sbjct 48390 CCACCGCGAAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 48331
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | | || || ||||||||||||||||| ||||| | ||| ||||| | |||
Sbjct 48330 AGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 48271
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| | ||||| || ||| || ||| || || | ||||| | |||||
Sbjct 48270 ATTCCTTCCTTATCTTGGATCTTGGCCTTGACATGTTCG--ATGGTGTCAGAAGGCTCCA 48213
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || ||||| || ||||| ||||| |||||||||
Sbjct 48212 CCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 48163
>seq15643
Length=27379
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||| | || || ||| ||||||||| || || || || ||
Sbjct 12273 CCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAA 12214
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || |||||||| || |||||||| |||| | ||| || || | ||
Sbjct 12213 AGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGG 12154
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | || ||||| ||| || |||| || | | |||||| | ||| ||
Sbjct 12153 ATTCCTTCTTTGTCTTGGATCTTG-GCTTTGACATTTTCGATAGTGTCAGAGGGCTCTAC 12095
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || ||||| ||||| || ||||| ||||||||||||||
Sbjct 12094 CTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 12047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461906222080800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |