Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq994 161 1e-34
seq6658 149 7e-31
seq5418 132 6e-26
seq3845 132 6e-26
seq1632 114 2e-20
>seq994
Length=361151
Score = 161 bits (178), Expect = 1e-34
Identities = 667/1031 (65%), Gaps = 52/1031 (5%)
Strand=Plus/Minus
Query 147346 CCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATTTAAAAAATTTCCATCAGGA 147405
||||||||||| ||| | || |||||| | | || || || ||||||||| |||
Sbjct 159150 CCCATGTTAGCTGAACCTTGCAGTTCTGTGGAATATGCCTTCAAGAAATTTCCAAGTGGA 159091
Query 147406 ATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGTTCATAAAAATAATAACGAG 147465
|||| ||||||| | || || ||||| || || ||||| || || ||| || || |
Sbjct 159090 ATGTATGCTGAAATAAAGTATGATGGTGAAAGGGTACAGGTCCACAAACATGGAGACAAA 159031
Query 147466 TTTGCCTTTTTTAGTAGAAACATGAAACCAGTACTCTCTTATAAAGTGGATTATCTCAAA 147525
||| | ||||||| ||| | ||||| || | || | ||| | |||| |||
Sbjct 159030 TTTAATTATTTTAGTCGAAGTTTAAAACCCGTGATGCCTCACAAAATTTCACATCTGAAA 158971
Query 147526 GAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTGGATTCTGAAATTGTT 147585
||||||||||| ||||| ||| |||||| | | || | ||| |||| | |
Sbjct 158970 GAATACATACCTAAAGCTTTTCCTCAAGCTAGTGATTTGATACTTGATAGTGAAGTACTA 158911
Query 147586 CTTGTAGACGAACATAATGTACAGC---TCCCGTTTGGAAGTTTAGGTATACACAAAAAG 147642
||||||||| || | || ||| | || ||||||| ||||| | || |||||
Sbjct 158910 CTTGTAGACACTCAAACTGGGAAGCCACTTCCATTTGGAACATTAGGAGTTCATAAAAAA 158851
Query 147643 AAAGAATATAAAAACTCTAACATGTGTTTGTTTGTGTTTGACTGTTTGTACTTTGATGGA 147702
| | || | | | ||||||||||||| |||||||| | ||| | |||||
Sbjct 158850 GCTGCTTTCAAGGATGCAAGTGTGTGTTTGTTTGTCTTTGACTGCATTCACTATAATGGA 158791
Query 147703 TTCGATATGACGGACATTCCATTGT---ACAAACG-AAGATCTTTTCTCA-AAGATGTTA 147757
|| | | ||| ||| || | | | ||| || || | ||||| || ||| |
Sbjct 158790 GAAAATCTAATGGAGCGTCCTTTATCTGAGAGACGCAACATTCTGTCTCAGAACATG--A 158733
Query 147758 TGGTCGAGATACCCAATAGAATAGTATTCTCAGAGTTGACGAATAT--TAGTAACG--AG 147813
||| |||| ||| || | || ||||| ||| | | | ||| || ||
Sbjct 158732 TGG---AGATTAAAAATCACATCATGTTTTCAGAAATGAAGCTTGTGATAGAAAAAGAAG 158676
Query 147814 T-CTCAGTTAACTGACGTATTGGATGATGCACTAACAAGAAAATTAGAAGGATTGGTCTT 147872
| || | || ||| || || || ||| || |||||||| | || |
Sbjct 158675 TACTAAAAAAAATGA----TTCAATCTGCCATTAATCAGGGT-TTAGAAGGGCTAGTTCT 158621
Query 147873 AAAAGATATTAATGGAGTATACGAGCCGGGAAAAAGAAGATGGTTAAAAATAAAGCGAGA 147932
|||| | || || ||||| |||||| || ||| ||||||| || |||
Sbjct 158620 GAAAGGCACAAACAACACGTATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGA 158561
Query 147933 CTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCTTACTA 147992
|| | | || || | ||||||||||| || ||| | || || || || || || |
Sbjct 158560 TTACCTAGAAGATGGAGCAATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTT 158501
Query 147993 TGGTAAAGGAGCAAAGGGTGGTATTATGGCAGTCTTTCTAATGGGTTGTTACGATGATGA 148052
||| | ||| || ||||| || ||| || | ||||| ||||| ||||||||| ||
Sbjct 158500 TGGAACTGGAAATAAAGGTGGAATGATGTCAATATTTCTGATGGGATGTTACGATCCTG- 158442
Query 148053 ATCCGGTAAA---TGGAAGACGGTAACTAAA-TG--TTCAGGACATGATGATAATACGTT 148106
| ||||| ||| || || || ||| || | ||||||||||||| |||
Sbjct 158441 --CTAGTAAAAAATGGTGTACTGTTACAAAAGTGCATGGAGGACATGATGATGCTAC--- 158387
Query 148107 AAGGGTTTTGCAAGAC--CAA--TTAACG----ATGGTTAAAATTAACAAGGATCCCaaa 148158
||||| || || ||| | | | ||| ||||||| ||||| || |
Sbjct 158386 -----TTTTGAAAAACTCCAAACTGAGCTGGACATGAAAAAAATTAGGAAGGACCCAAGT 158332
Query 148159 aaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTAT-ATTCCCGATTTTGTAGTAGAGGA 148217
||| |||| | ||| || ||| ||||||| || | ||||| |||||||| | | ||
Sbjct 158331 AAAGTTCCTGCTTGGCTGAAAGTGAATAAAA-CTCTCATTCCTGATTTTGTTGCTAATGA 158273
Query 148218 TCCGAAACAATCTCAAATATGGGAAATTTCAGGAGCAGAGTTTACATCTTC-CAAGTCAC 148276
||| ||| | || | | ||||||||||| |||||||| |||||| | || || |
Sbjct 158272 TCCTAAAAACTCCCCAGTATGGGAAATTGTTGGAGCAGAATTTACAAAAGCAGAAATC-C 158214
Query 148277 ATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAA 148336
||||||| |||||||| || ||| | ||||| ||| || | | || |||| || ||||
Sbjct 158213 ATACAGCCAATGGAATCTCTATTCGTTTTCCAAGAGTTGCAAAAATCCGAGATGACAAAA 158154
Query 148337 CGTGGAAAGAA 148347
| |||||||||
Sbjct 158153 CATGGAAAGAA 158143
>seq6658
Length=47451
Score = 149 bits (164), Expect = 7e-31
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 24529 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 24588
|||||||||| ||||| || ||||| || ||||| || || |||||||| | | |||| |
Sbjct 26438 TCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAAAGTGTCTTTCTT 26497
Query 24589 CTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCC 24648
| ||| ||| || |||||||| || |||||||| | ||||||||||| | ||||
Sbjct 26498 CAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTTCTTCAGCAGTCC 26557
Query 24649 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAA 24708
| || || |||||||| || || ||||||| ||| || || | || | |||||| ||||
Sbjct 26558 AGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACTCAATTGGTAAAA 26617
Query 24709 TAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 24745
| ||||||| ||| ||||||| || | | ||||
Sbjct 26618 TTACAAATCGTCCTGGGTTTTTTGTCAGAAGTAGTTC 26654
Score = 100 bits (110), Expect = 3e-16
Identities = 94/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455
|| || ||||| ||||| ||||| ||||| |||||||| ||||| ||||| || | ||
Sbjct 25523 TCCTTCACATAAGTATCTATCAAGAGACTGTACATTTCAGAATGTATGTTCTCCACTGCA 25582
Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515
|| ||||| | ||||||||| | ||| ||||||||||| || || ||| |||||| ||
Sbjct 25583 ATCTGAAAGCTGTAGAAACAACGAGCTTCGGTAATCTGGACCTCCTGACAGAATCGTGCT 25642
>seq5418
Length=65370
Score = 132 bits (146), Expect = 6e-26
Identities = 154/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 24522 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 24581
|||||||| ||||| || ||||| || ||||| || ||||| ||||| ||||| | |
Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860
Query 24582 TTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 24641
|||| || | ||| | | ||| |||| | ||| || |||| || ||||||||
Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800
Query 24642 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATT 24701
||||||||||||| ||||||||| | || ||||| | ||||||||| | |||| |||
Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740
Query 24702 GGAAAAATAACAAATCTATTTGGATTTT 24729
||||| || ||||| || | || ||||
Sbjct 6739 GGAAACATTACAAACCTTCTAGGGTTTT 6712
Score = 123 bits (136), Expect = 3e-23
Identities = 164/225 (73%), Gaps = 7/225 (3%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| || || | || || ||| ||||| || ||||| |||||||||||||
Sbjct 8159 CCTCATCTCTGCTGATCAGCTCATTACTAAAAGTGAGACCAGGCATCAGGCCACGCTTTT 8100
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| || || || ||||| || ||||| || || ||||||||||| || ||||| |
Sbjct 8099 TTAGCCAGAAAATTGAAGCAAAAGACCCAGAGAAAAATATTCCTTCTACAGCAGCAAAAG 8040
Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGT--CATG---TATCCACTTTTGAGCCCAATC 24331
| | || || || || || | ||||| ||| ||||| | ||||||| ||
Sbjct 8039 CCACAACTCGCTCACC--AAATGTTGCTGTAGGATGGCTAATCCAAGTGAGAGCCCAGTC 7982
Query 24332 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376
|| ||||| |||||||| |||| ||||| || ||||| || ||
Sbjct 7981 TGCTTTCTTCTTTACACATGGCAAGGTCTCAATTGCATTGAAAAG 7937
Score = 91.5 bits (100), Expect = 2e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 24385 TTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 24444
||||||| ||| || | || || ||||| || | |||||||||||| || |||| |
Sbjct 7532 TTTCATTTGGATCCTTGATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACAT 7473
Query 24445 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499
|||||||||| ||||| || || || ||||| ||||| ||||| | ||| |||||
Sbjct 7472 TTTCAATGGCAATTTGGAAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTC 7418
>seq3845
Length=110360
Score = 132 bits (146), Expect = 6e-26
Identities = 167/227 (74%), Gaps = 7/227 (3%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| |||||||| || | ||| || || || | || ||||| || || | ||| |
Sbjct 72985 CCTCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCT 72926
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
||||||| ||||| || |||||||| ||||||||||| || || || || || |||||||
Sbjct 72925 TAAGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGG 72866
Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGT--CATG---TATCCACTTTTGAGCCCAATC 24331
| | || || || ||| || | ||||| ||| |||||| || ||||||||||
Sbjct 72865 CTACAACTCGCTCACCAAAA--GTAGCTGTAGGATGACCTATCCAGTTGAGAGCCCAATC 72808
Query 24332 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 24378
|| ||||| || |||||||||| || || || ||||| || ||||
Sbjct 72807 TGCTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGAT 72761
Score = 129 bits (142), Expect = 7e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580
||||||||| || || || ||||| || ||||| || |||| | || ||||| |
Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976
Query 24581 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 24640
|| ||| ||| | ||| || | ||| | | | ||||| || | ||| ||||||||
Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTC 70916
Query 24641 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 24700
|| ||||| ||||| |||||||| || |||||||| | ||||||||| | |||| |||
Sbjct 70915 TACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAAT 70856
Query 24701 TGGAAAAATAACAAATCTATTTGGATTTT 24729
||||||||||||||||| |||||||
Sbjct 70855 GGGAAAAATAACAAATCTCCGAGGATTTT 70827
>seq1632
Length=265768
Score = 114 bits (126), Expect = 2e-20
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449
||||| || ||||| || |||||||| || |||||| || ||||||| || || |||
Sbjct 21155 TATGTTTCATATGGCCCCAACTTCTCAGATAATTCACAGCTTGCCTCTACAGCTCCATAA 21214
Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509
||||| || || || |||| | ||||| ||| ||||| || ||||||||||||
Sbjct 21215 TAAATAGTCTCAAAAATCTGAATGTTTAGTAGTTGGGCTTCTTTACTGTCAAATGGATAA 21274
Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569
| ||||| || || ||||||| || ||||||||||| || || |||| |||| |
Sbjct 21275 CGCATAAGAATGAAGGCATCTGCTAGCCCCTGAACACCAATGCCAATTGGTCGATGTTTT 21334
Query 53570 TTATTAGA 53577
|| || ||
Sbjct 21335 TTGTTTGA 21342
Score = 102 bits (112), Expect = 1e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 53142 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 53201
||||| |||||||||||| || || | || | || | ||| ||||| || || || |
Sbjct 18440 GATTACTTACTTGAAATTCACCTGAGAGGACACGACGGGAGTATATATTGCTTGTGTAAG 18499
Query 53202 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 53261
|||| | ||||||||| ||||| | ||| || |||||||| ||||| ||||||||||| |
Sbjct 18500 GTTCAATAGACTCATTGTTTCCAAGAATCTGGGCAGTTGAAGCAGTTGGCATAGGTGCAA 18559
Query 53262 CCAATAAACTATTTCT 53277
| ||| || |||||
Sbjct 18560 TGAGTAAGCTGTTTCT 18575
Score = 96.9 bits (106), Expect = 4e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934
|||| || || |||||||| || || ||||| |||| | || || ||||| || ||||
Sbjct 17145 TCCACCCATAGAAATGCATGCTGGTCAGTTTTCCATAATTGGGGTCAGCTATGTGAATAT 17204
Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994
||| ||| ||||| ||||| || || ||||| | ||| || |||| || ||||| |
Sbjct 17205 TCAGAGACTGACTCTGATCAATAAATGCTCCTCGGTCAGCTCCCATCTTGATGATAAGCC 17264
Query 52995 TTTGTGGAATTTCCCAAATAGTT 53017
||| ||||||||||| | ||||
Sbjct 17265 GTTGGGGAATTTCCCACACAGTT 17287
Score = 91.5 bits (100), Expect = 2e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818
||||| || || | |||||||| ||||||||||| | || || || || |||| ||
Sbjct 23385 ATCTCTGTACATAAGTTACTACATTTGATGGTTCCAAGGTTCTGCTGGTTTGACTTTCTG 23444
Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878
||||| ||||| || || || ||| |||| || |||||||||| ||| | ||||| |||
Sbjct 23445 TTACAGGCATCTTTGTAGAGCATGTATGGTGTCCCAGTTTCAACCTGAGCTTCTAAAATT 23504
Query 53879 GCTTTCCA 53886
|| | |||
Sbjct 23505 GCATACCA 23512
Score = 82.4 bits (90), Expect = 9e-11
Identities = 119/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||||||| ||||| ||||||||||||| || || || || || | ||| || || |
Sbjct 50439 CACTAAATGTCTTTTTAGTTTCTTTGTGTAAGTTGGAGACAGCAATGCGAGCAGCAAGGA 50498
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
|||||||| ||||||| || || || || || |||| |||| | |||| |
Sbjct 50499 GAGCATAATCTGGATGTTTAGTTGTCATGGTTGCAGCAGTTTCTGCTGCTAAGTTGTCAA 50558
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 54935
||| || || ||||| ||| ||||| || | ||| ||||||| ||
Sbjct 50559 GTTCAACTGTCGTTACACCAGGATATAAGCCATTGATGACCTTCAAAG 50606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591593160014640
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