Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq994 161 1e-34 seq6658 149 7e-31 seq5418 132 6e-26 seq3845 132 6e-26 seq1632 114 2e-20 >seq994 Length=361151 Score = 161 bits (178), Expect = 1e-34 Identities = 667/1031 (65%), Gaps = 52/1031 (5%) Strand=Plus/Minus Query 147346 CCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATTTAAAAAATTTCCATCAGGA 147405 ||||||||||| ||| | || |||||| | | || || || ||||||||| ||| Sbjct 159150 CCCATGTTAGCTGAACCTTGCAGTTCTGTGGAATATGCCTTCAAGAAATTTCCAAGTGGA 159091 Query 147406 ATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGTTCATAAAAATAATAACGAG 147465 |||| ||||||| | || || ||||| || || ||||| || || ||| || || | Sbjct 159090 ATGTATGCTGAAATAAAGTATGATGGTGAAAGGGTACAGGTCCACAAACATGGAGACAAA 159031 Query 147466 TTTGCCTTTTTTAGTAGAAACATGAAACCAGTACTCTCTTATAAAGTGGATTATCTCAAA 147525 ||| | ||||||| ||| | ||||| || | || | ||| | |||| ||| Sbjct 159030 TTTAATTATTTTAGTCGAAGTTTAAAACCCGTGATGCCTCACAAAATTTCACATCTGAAA 158971 Query 147526 GAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTGGATTCTGAAATTGTT 147585 ||||||||||| ||||| ||| |||||| | | || | ||| |||| | | Sbjct 158970 GAATACATACCTAAAGCTTTTCCTCAAGCTAGTGATTTGATACTTGATAGTGAAGTACTA 158911 Query 147586 CTTGTAGACGAACATAATGTACAGC---TCCCGTTTGGAAGTTTAGGTATACACAAAAAG 147642 ||||||||| || | || ||| | || ||||||| ||||| | || ||||| Sbjct 158910 CTTGTAGACACTCAAACTGGGAAGCCACTTCCATTTGGAACATTAGGAGTTCATAAAAAA 158851 Query 147643 AAAGAATATAAAAACTCTAACATGTGTTTGTTTGTGTTTGACTGTTTGTACTTTGATGGA 147702 | | || | | | ||||||||||||| |||||||| | ||| | ||||| Sbjct 158850 GCTGCTTTCAAGGATGCAAGTGTGTGTTTGTTTGTCTTTGACTGCATTCACTATAATGGA 158791 Query 147703 TTCGATATGACGGACATTCCATTGT---ACAAACG-AAGATCTTTTCTCA-AAGATGTTA 147757 || | | ||| ||| || | | | ||| || || | ||||| || ||| | Sbjct 158790 GAAAATCTAATGGAGCGTCCTTTATCTGAGAGACGCAACATTCTGTCTCAGAACATG--A 158733 Query 147758 TGGTCGAGATACCCAATAGAATAGTATTCTCAGAGTTGACGAATAT--TAGTAACG--AG 147813 ||| |||| ||| || | || ||||| ||| | | | ||| || || Sbjct 158732 TGG---AGATTAAAAATCACATCATGTTTTCAGAAATGAAGCTTGTGATAGAAAAAGAAG 158676 Query 147814 T-CTCAGTTAACTGACGTATTGGATGATGCACTAACAAGAAAATTAGAAGGATTGGTCTT 147872 | || | || ||| || || || ||| || |||||||| | || | Sbjct 158675 TACTAAAAAAAATGA----TTCAATCTGCCATTAATCAGGGT-TTAGAAGGGCTAGTTCT 158621 Query 147873 AAAAGATATTAATGGAGTATACGAGCCGGGAAAAAGAAGATGGTTAAAAATAAAGCGAGA 147932 |||| | || || ||||| |||||| || ||| ||||||| || ||| Sbjct 158620 GAAAGGCACAAACAACACGTATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGA 158561 Query 147933 CTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCTTACTA 147992 || | | || || | ||||||||||| || ||| | || || || || || || | Sbjct 158560 TTACCTAGAAGATGGAGCAATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTT 158501 Query 147993 TGGTAAAGGAGCAAAGGGTGGTATTATGGCAGTCTTTCTAATGGGTTGTTACGATGATGA 148052 ||| | ||| || ||||| || ||| || | ||||| ||||| ||||||||| || Sbjct 158500 TGGAACTGGAAATAAAGGTGGAATGATGTCAATATTTCTGATGGGATGTTACGATCCTG- 158442 Query 148053 ATCCGGTAAA---TGGAAGACGGTAACTAAA-TG--TTCAGGACATGATGATAATACGTT 148106 | ||||| ||| || || || ||| || | ||||||||||||| ||| Sbjct 158441 --CTAGTAAAAAATGGTGTACTGTTACAAAAGTGCATGGAGGACATGATGATGCTAC--- 158387 Query 148107 AAGGGTTTTGCAAGAC--CAA--TTAACG----ATGGTTAAAATTAACAAGGATCCCaaa 148158 ||||| || || ||| | | | ||| ||||||| ||||| || | Sbjct 158386 -----TTTTGAAAAACTCCAAACTGAGCTGGACATGAAAAAAATTAGGAAGGACCCAAGT 158332 Query 148159 aaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTAT-ATTCCCGATTTTGTAGTAGAGGA 148217 ||| |||| | ||| || ||| ||||||| || | ||||| |||||||| | | || Sbjct 158331 AAAGTTCCTGCTTGGCTGAAAGTGAATAAAA-CTCTCATTCCTGATTTTGTTGCTAATGA 158273 Query 148218 TCCGAAACAATCTCAAATATGGGAAATTTCAGGAGCAGAGTTTACATCTTC-CAAGTCAC 148276 ||| ||| | || | | ||||||||||| |||||||| |||||| | || || | Sbjct 158272 TCCTAAAAACTCCCCAGTATGGGAAATTGTTGGAGCAGAATTTACAAAAGCAGAAATC-C 158214 Query 148277 ATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAA 148336 ||||||| |||||||| || ||| | ||||| ||| || | | || |||| || |||| Sbjct 158213 ATACAGCCAATGGAATCTCTATTCGTTTTCCAAGAGTTGCAAAAATCCGAGATGACAAAA 158154 Query 148337 CGTGGAAAGAA 148347 | ||||||||| Sbjct 158153 CATGGAAAGAA 158143 >seq6658 Length=47451 Score = 149 bits (164), Expect = 7e-31 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 24529 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 24588 |||||||||| ||||| || ||||| || ||||| || || |||||||| | | |||| | Sbjct 26438 TCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAAAGTGTCTTTCTT 26497 Query 24589 CTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCC 24648 | ||| ||| || |||||||| || |||||||| | ||||||||||| | |||| Sbjct 26498 CAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTTCTTCAGCAGTCC 26557 Query 24649 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAA 24708 | || || |||||||| || || ||||||| ||| || || | || | |||||| |||| Sbjct 26558 AGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACTCAATTGGTAAAA 26617 Query 24709 TAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 24745 | ||||||| ||| ||||||| || | | |||| Sbjct 26618 TTACAAATCGTCCTGGGTTTTTTGTCAGAAGTAGTTC 26654 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || || ||||| ||||| ||||| ||||| |||||||| ||||| ||||| || | || Sbjct 25523 TCCTTCACATAAGTATCTATCAAGAGACTGTACATTTCAGAATGTATGTTCTCCACTGCA 25582 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 || ||||| | ||||||||| | ||| ||||||||||| || || ||| |||||| || Sbjct 25583 ATCTGAAAGCTGTAGAAACAACGAGCTTCGGTAATCTGGACCTCCTGACAGAATCGTGCT 25642 >seq5418 Length=65370 Score = 132 bits (146), Expect = 6e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 24522 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 24581 |||||||| ||||| || ||||| || ||||| || ||||| ||||| ||||| | | Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860 Query 24582 TTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 24641 |||| || | ||| | | ||| |||| | ||| || |||| || |||||||| Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800 Query 24642 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATT 24701 ||||||||||||| ||||||||| | || ||||| | ||||||||| | |||| ||| Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740 Query 24702 GGAAAAATAACAAATCTATTTGGATTTT 24729 ||||| || ||||| || | || |||| Sbjct 6739 GGAAACATTACAAACCTTCTAGGGTTTT 6712 Score = 123 bits (136), Expect = 3e-23 Identities = 164/225 (73%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | || || ||| ||||| || ||||| ||||||||||||| Sbjct 8159 CCTCATCTCTGCTGATCAGCTCATTACTAAAAGTGAGACCAGGCATCAGGCCACGCTTTT 8100 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || || ||||| || ||||| || || ||||||||||| || ||||| | Sbjct 8099 TTAGCCAGAAAATTGAAGCAAAAGACCCAGAGAAAAATATTCCTTCTACAGCAGCAAAAG 8040 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGT--CATG---TATCCACTTTTGAGCCCAATC 24331 | | || || || || || | ||||| ||| ||||| | ||||||| || Sbjct 8039 CCACAACTCGCTCACC--AAATGTTGCTGTAGGATGGCTAATCCAAGTGAGAGCCCAGTC 7982 Query 24332 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 || ||||| |||||||| |||| ||||| || ||||| || || Sbjct 7981 TGCTTTCTTCTTTACACATGGCAAGGTCTCAATTGCATTGAAAAG 7937 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 24385 TTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 24444 ||||||| ||| || | || || ||||| || | |||||||||||| || |||| | Sbjct 7532 TTTCATTTGGATCCTTGATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACAT 7473 Query 24445 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 |||||||||| ||||| || || || ||||| ||||| ||||| | ||| ||||| Sbjct 7472 TTTCAATGGCAATTTGGAAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTC 7418 >seq3845 Length=110360 Score = 132 bits (146), Expect = 6e-26 Identities = 167/227 (74%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | ||| || || || | || ||||| || || | ||| | Sbjct 72985 CCTCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCT 72926 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 ||||||| ||||| || |||||||| ||||||||||| || || || || || ||||||| Sbjct 72925 TAAGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGG 72866 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGT--CATG---TATCCACTTTTGAGCCCAATC 24331 | | || || || ||| || | ||||| ||| |||||| || |||||||||| Sbjct 72865 CTACAACTCGCTCACCAAAA--GTAGCTGTAGGATGACCTATCCAGTTGAGAGCCCAATC 72808 Query 24332 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 24378 || ||||| || |||||||||| || || || ||||| || |||| Sbjct 72807 TGCTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGAT 72761 Score = 129 bits (142), Expect = 7e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 ||||||||| || || || ||||| || ||||| || |||| | || ||||| | Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976 Query 24581 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 24640 || ||| ||| | ||| || | ||| | | | ||||| || | ||| |||||||| Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTC 70916 Query 24641 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 24700 || ||||| ||||| |||||||| || |||||||| | ||||||||| | |||| ||| Sbjct 70915 TACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAAT 70856 Query 24701 TGGAAAAATAACAAATCTATTTGGATTTT 24729 ||||||||||||||||| ||||||| Sbjct 70855 GGGAAAAATAACAAATCTCCGAGGATTTT 70827 >seq1632 Length=265768 Score = 114 bits (126), Expect = 2e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 ||||| || ||||| || |||||||| || |||||| || ||||||| || || ||| Sbjct 21155 TATGTTTCATATGGCCCCAACTTCTCAGATAATTCACAGCTTGCCTCTACAGCTCCATAA 21214 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 ||||| || || || |||| | ||||| ||| ||||| || |||||||||||| Sbjct 21215 TAAATAGTCTCAAAAATCTGAATGTTTAGTAGTTGGGCTTCTTTACTGTCAAATGGATAA 21274 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 | ||||| || || ||||||| || ||||||||||| || || |||| |||| | Sbjct 21275 CGCATAAGAATGAAGGCATCTGCTAGCCCCTGAACACCAATGCCAATTGGTCGATGTTTT 21334 Query 53570 TTATTAGA 53577 || || || Sbjct 21335 TTGTTTGA 21342 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 53142 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 53201 ||||| |||||||||||| || || | || | || | ||| ||||| || || || | Sbjct 18440 GATTACTTACTTGAAATTCACCTGAGAGGACACGACGGGAGTATATATTGCTTGTGTAAG 18499 Query 53202 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 53261 |||| | ||||||||| ||||| | ||| || |||||||| ||||| ||||||||||| | Sbjct 18500 GTTCAATAGACTCATTGTTTCCAAGAATCTGGGCAGTTGAAGCAGTTGGCATAGGTGCAA 18559 Query 53262 CCAATAAACTATTTCT 53277 | ||| || ||||| Sbjct 18560 TGAGTAAGCTGTTTCT 18575 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || |||||||| || || ||||| |||| | || || ||||| || |||| Sbjct 17145 TCCACCCATAGAAATGCATGCTGGTCAGTTTTCCATAATTGGGGTCAGCTATGTGAATAT 17204 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| ||||| ||||| || || ||||| | ||| || |||| || ||||| | Sbjct 17205 TCAGAGACTGACTCTGATCAATAAATGCTCCTCGGTCAGCTCCCATCTTGATGATAAGCC 17264 Query 52995 TTTGTGGAATTTCCCAAATAGTT 53017 ||| ||||||||||| | |||| Sbjct 17265 GTTGGGGAATTTCCCACACAGTT 17287 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 ||||| || || | |||||||| ||||||||||| | || || || || |||| || Sbjct 23385 ATCTCTGTACATAAGTTACTACATTTGATGGTTCCAAGGTTCTGCTGGTTTGACTTTCTG 23444 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 ||||| ||||| || || || ||| |||| || |||||||||| ||| | ||||| ||| Sbjct 23445 TTACAGGCATCTTTGTAGAGCATGTATGGTGTCCCAGTTTCAACCTGAGCTTCTAAAATT 23504 Query 53879 GCTTTCCA 53886 || | ||| Sbjct 23505 GCATACCA 23512 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||||||| ||||| ||||||||||||| || || || || || | ||| || || | Sbjct 50439 CACTAAATGTCTTTTTAGTTTCTTTGTGTAAGTTGGAGACAGCAATGCGAGCAGCAAGGA 50498 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 |||||||| ||||||| || || || || || |||| |||| | |||| | Sbjct 50499 GAGCATAATCTGGATGTTTAGTTGTCATGGTTGCAGCAGTTTCTGCTGCTAAGTTGTCAA 50558 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 54935 ||| || || ||||| ||| ||||| || | ||| ||||||| || Sbjct 50559 GTTCAACTGTCGTTACACCAGGATATAAGCCATTGATGACCTTCAAAG 50606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591593160014640