Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4435 167 4e-36 seq5467 158 2e-33 seq1156 150 3e-31 seq1267 143 4e-29 seq629 127 3e-24 seq10507 102 1e-16 seq2652 91.5 2e-13 seq49 89.7 8e-13 >seq4435 Length=89394 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||||| || || ||||| || ||| | || ||||| | | | Sbjct 36045 ATGCAAATCTTTGTTAAAACACTTACTGGAAAAACAATTACTCTGGAAGTTGAACCCAGT 36104 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| ||||| |||||||||||||||||||| || ||||| |||||| Sbjct 36105 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 36164 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||||||||| ||||| || || ||| |||| || ||| |||||||||| Sbjct 36165 CAAAGATTGATTTTTGCAGGGAAACAGTTGGAAGATGGTCGCACCTTATCAGATTATAAT 36224 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | || ||||| | | || || ||||| || Sbjct 36225 ATTCAGAAGGAGTCCACACTTCACTTGGTACTTAGGTTGCGTGGTGGCAT 36274 Score = 141 bits (156), Expect = 1e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || |||||||| |||||||| | || ||||| | | | Sbjct 32655 ATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGT 32714 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| ||||| || ||||||||||| || ||||| |||||| Sbjct 32715 GATACTATTGAAAACGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGATCAA 32774 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||||||||| ||||||||||| ||| | || || ||| |||||||||| Sbjct 32775 CAAAGATTGATTTTTGCAGGGAAACAATTAGAAGATGGGCGCACCTTATCAGATTATAAT 32834 Query 124719 ATTCAAAA 124726 ||||| || Sbjct 32835 ATTCAGAA 32842 Score = 134 bits (148), Expect = 2e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || |||||| |||||| ||||||| ||||||||||| || || ||| | ||| | || | Sbjct 35813 TAAAATGCAGATATTTGTAAAGACGCTAACAGGCAAGACAATCACTTTGGAGGTAGAGCC 35872 Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654 | || || || || | ||| ||||| |||||||| || || || |||||||| Sbjct 35873 TAGCGACACCATAGAGAACGTCAAAGCTAAAATCCAAGATAAGGAGGGAATTCCACCTGA 35932 Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714 ||||||||| | || ||||| ||||| || || || ||| | || || || |||||| Sbjct 35933 TCAACAAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACCTTGTCAGATTA 35992 Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||||| || || || ||||| ||| ||||| Sbjct 35993 CAATATTCAGAAGGAGTCTACTTTACATCTGGTT 36026 Score = 131 bits (144), Expect = 3e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || ||||| ||||| || || | ||| | ||| | | Sbjct 36500 AATGCAAATTTTTGTTAAGACTCTGACAGGAAAAACCATCACCCTTGAGGTAGAACCCAG 36559 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| || ||||||||||| || || || || || || || Sbjct 36560 TGATACAATCGAAAATGTGAAAGCTAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCA 36619 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||| | |||||||| || || ||||| || ||| | |||| | |||||| || Sbjct 36620 ACAAAGGTTAATTTTTGCTGGGAAGCAATTGGAAGATGGAAGAACCCTGTCAGATTACAA 36679 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||| ||||||||||| | || ||||| Sbjct 36680 CATTCAGAAAGAATCAACCCTTCACTTGGT 36709 Score = 122 bits (134), Expect = 1e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || |||||||| |||||||| | || ||||| | | | Sbjct 36273 ATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGT 36332 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| || ||||||||||| || ||||| || ||| Sbjct 36333 GACACTATTGAAAATGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGACCAA 36392 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || |||||||||||||| ||||| ||| | |||| | ||||||||| Sbjct 36393 CAGAGGTTAATCTTTGCAGGAAAACAGTTAGAAGATGGGAGAACTCTGTCAGATTATAAC 36452 Query 124719 ATTCAAAAAGAATCAAC 124735 || || ||||| || || Sbjct 36453 ATCCAGAAAGAGTCTAC 36469 >seq5467 Length=66102 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || |||||||| ||| | ||| | ||| ||| | Sbjct 29819 ATGCAGATTTTTGTCAAGACCCTCACTGGAAAAACTATCACTTTGGAGGTGGAACCAAGT 29760 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| ||||| || || ||||| |||||||| || |||||||| ||| Sbjct 29759 GACACAATTGAGAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCTGACCAA 29700 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || ||||||||||| ||||| | |||||| | || || | ||||||||| Sbjct 29699 CAGAGACTGATTTTTGCAGGTAAACAGCTGGAGGATGGACGGACCCTTTCTGATTATAAT 29640 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| |||||||| ||||||||| | || || | | || ||||| Sbjct 29639 ATTCAGAAAGAATCTACTTTGCATCTTGTCCTAAGACTGCGTGGTGG 29593 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| | || || ||||| |||||||| || ||| | || | ||| | Sbjct 30050 ACCATGCAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTCTGGAAGTAGAACCT 29991 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 | |||||| ||| ||| ||||| ||||||||||| ||||||||||| ||||| || Sbjct 29990 AGTGATACTATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGAC 29931 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||||| || ||||||||||| |||||| | |||||| | || || | || || Sbjct 29930 CAGCAAAGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGACCCTTTCTGACTAC 29871 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| ||||||||| | ||| ||||| | || || |||| || || Sbjct 29870 AATATCCAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGAGGAGGGAT 29818 >seq1156 Length=327524 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| |||| || | ||||| || ||||| || |||| | || | | Sbjct 17491 AATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAGAGCCTAG 17550 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| |||| ||||| |||||||||||||| || || |||||||| Sbjct 17551 TGACACTATTGAGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCA 17610 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || | || ||||||||||| || |||| ||| | ||||| || |||||| || Sbjct 17611 ACAGAGATTAATATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCAGATTACAA 17670 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| ||||| || ||| | ||| | ||| ||||| |||| |||||||| Sbjct 17671 TATTCAGAAAGAGTCCACTCTTCATCTTGTTCTACGTCTACGTGGTGGTAT 17721 >seq1267 Length=316221 Score = 143 bits (158), Expect = 4e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || |||||||| |||||||| ||| | || | || | | | Sbjct 206657 ATGCAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAGT 206598 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||||||||| |||||||| || || || || ||| Sbjct 206597 GACACCATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAA 206538 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | |||||||| |||||||| || |||||| |||| ||||| ||| ||||| Sbjct 206537 CAGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAGACTATAAC 206478 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 |||||||||||||| ||| | ||| | || || Sbjct 206477 ATTCAAAAAGAATCTACTCTTCATCTAGTGTT 206446 Score = 131 bits (144), Expect = 3e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || ||||| |||||||| || | || ||||| ||| | Sbjct 206201 ATGCAGATCTTTGTTAAGACTCTGACAGGTAAAACTATCACCCTGGAAGTTGAACCAAGT 206142 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || |||| ||||| || |||||||| || || || || || || Sbjct 206141 GACACTATTGAAAACGTAAAGGCTAAAATCCAGGATAAAGAGGGGATCCCTCCAGACCAG 206082 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||| | |||||||||||||| || || || ||| | |||| ||| ||||| ||| Sbjct 206081 CAAAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206022 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||||||||| ||||| Sbjct 206021 ATTCAAAAAGAGTCAAC 206005 Score = 122 bits (134), Expect = 1e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || |||||||| || || |||| ||||| | | | Sbjct 206429 ATGCAGATCTTTGTGAAAACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAACCCAGT 206370 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || || || ||||| |||||||| || || || || || Sbjct 206369 GACACAATTGAAAATGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 206310 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | |||||||||||||| || || || ||| | |||| ||| ||||| ||| Sbjct 206309 CAGAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206250 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||||||||| ||||| Sbjct 206249 ATTCAAAAAGAGTCAAC 206233 >seq629 Length=499154 Score = 127 bits (140), Expect = 3e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| ||| | ||||| || || || ||||| || ||| | || | || || Sbjct 5735 ACCATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCA 5794 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 | ||| ||||| ||| ||||| || || ||||| || ||||| || |||||||| Sbjct 5795 AGTGACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 5854 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 ||||| || || || ||||| || |||||| | |||||| |||||||| | || || Sbjct 5855 CAACAGAGACTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGAACACTTTCTGACTAC 5914 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || || ||||||||||| || | ||| ||||| Sbjct 5915 AACATCCAAAAAGAATCTACCCTACATCTGGTT 5947 >seq10507 Length=18653 Score = 102 bits (112), Expect = 1e-16 Identities = 130/174 (75%), Gaps = 15/174 (9%) Strand=Plus/Minus Query 171847 TAAATTTTGAAAATTAGTAGTTAATGTTTCTAATTCtttttttATTTTATATTCACCATG 171906 ||||| || | ||| ||| || || |||||| || || |||||||| |||| Sbjct 13166 TAAATGTTCAGAATGAGTTGT--ATATTTCTA-------TTCTAATTTATATTTACCAGT 13116 Query 171907 TTTTCTAATATTTGGTAAAACTTCATTAGTTATCCATTTTTTAAATATTTTAGCTTCTGA 171966 ||||||||| |||||| ||||| | ||||||||||||||| |||| ||||| || Sbjct 13115 TTTTCTAATTGATGGTAACACTTCTGATGGTATCCATTTTTTAAACTTTTTTGCTTCCGA 13056 Query 171967 T--TTTTTAGATGATAAAATTAATGAATATAATCCAGATTCTGATATATAAATA 172018 | | |||| || ||| ||||||||||||||| |||||||| || || ||||| Sbjct 13055 TAATGTTTA-AT-ATATAATTAATGAATATAACCCAGATTC--ATTTACAAATA 13006 >seq2652 Length=172169 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/149 (76%), Gaps = 7/149 (5%) Strand=Plus/Plus Query 171871 TGTTTCTAATTCtttttttAT--TTTATATTCACCATGTTTTC-TAATATTTGGTAAAAC 171927 || || | || ||||| |||| |||||||| ||| ||||||| |||| |||||| | Sbjct 111042 TGATTTTTATACTTTTGTTATAGTTTATATTTACC-TGTTTTCCTAATTGATGGTAACGC 111100 Query 171928 TTCATTAGTTATCCATTTTTTAAA-TATTTTAGCTTCTGATTTTTTAGATGATAAAATTA 171986 ||| |||| |||||||| ||| | |||| ||||| ||| ||| || || | |||| Sbjct 111101 TTCCCATGTTACCCATTTTTAAAAATGTTTTTGCTTCGGATAATTTTGAAGACATAATTG 111160 Query 171987 ATGAATATAATCCAGATTC--TGATATAT 172013 |||| |||||||||||||| ||||| || Sbjct 111161 ATGACTATAATCCAGATTCATTGATAGAT 111189 >seq49 Length=1510430 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/139 (75%), Gaps = 6/139 (4%) Strand=Plus/Minus Query 171884 ttttttATTTTATATTCACCATGTTTTCTAATATTTGGTAAAACTTCATTAGTTATCCAT 171943 |||| |||||||||||||||| ||||||||| | |||||||||| ||| |||| Sbjct 228462 TTTTCTATTTTATATTCACCAGTTTTTCTAATTGATAGTAAAACTTCTGATGTTGCCCAT 228403 Query 171944 TTTTTAAA----TATTTTAGCTTCTGATTTTTTAGATGATAAAATTAATGAATATAATCC 171999 ||| |||| | |||| | ||| | | ||| || | |||||||||||||||| || Sbjct 228402 TTTATAAACCTTTTTTTTTGTTTCGGTTAATTTTGAATACGAAATTAATGAATATAACCC 228343 Query 172000 AGATTCTGATATATAAATA 172018 |||||| || ||||||| Sbjct 228342 AGATTC--ATTAATAAATA 228326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752747756342400