Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1267 111 1e-19 seq4435 102 7e-17 seq629 102 7e-17 >seq1267 Length=316221 Score = 111 bits (122), Expect = 1e-19 Identities = 168/238 (71%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || | ||||||||| | || | ||||| |||||||||||||| || || | Sbjct 206431 CCCCCACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGAC 206490 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| | |||||||||||| | || | | ||| || || || || Sbjct 206491 AATGTGCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGA 206550 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || |||||| |||||| || || | ||| | |||||| | ||| || Sbjct 206551 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACT 206610 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCTA 118749 || | || | ||||| || || || ||||||||||| |||||||| |||| |||| Sbjct 206611 TCCAGAGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT-CCTTAATCTA 206667 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 |||| ||| ||||| | ||| |||||||||||||| |||||||| | ||| | | Sbjct 206215 CTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCA 206274 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || | ||| ||||| || | || | | |||||| || ||||| || || || ||| Sbjct 206275 TCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCTTTG 206334 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| || || || || | ||| | ||||| || || || || | ||| | Sbjct 206335 TCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTAATG 206394 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||||| || ||||| ||||| ||||||||| Sbjct 206395 GTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCATG 206430 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 |||| ||| ||||| | ||| |||||||||||||| |||||||| | ||| | | Sbjct 205987 CTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCA 206046 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || | ||| ||||| || | || | | ||||| || ||||| || ||||| || Sbjct 206047 TCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGGATCCCCTCTTTA 206106 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCAC 118702 || ||||| || || | ||| | ||||| | || | || || || | ||| | Sbjct 206107 TCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGT-TCAACTTCCAGGGTGAT 206165 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| || |||||||| || ||||| ||||||||| || Sbjct 206166 AGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCATGCCT 206205 >seq4435 Length=89394 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 |||| || ||||| | |||||||||||| || ||||| ||||| || ||| | | | Sbjct 36487 CTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGACAGAGTTCTCCCA 36428 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || | ||||||||| || |||| | | ||| || || || || || || || || Sbjct 36427 TCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTGGAATTCCTTCTTTA 36368 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || |||||| ||| || | ||| | ||||| || || || |||| ||| | Sbjct 36367 TCCTGGATTTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCAACTTCGAGGGTTATA 36308 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || |||||||| || || ||||||||| Sbjct 36307 GTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCATG 36272 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||||| |||||||| | || || ||||| |||||||||||||| | Sbjct 36727 CCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGAC 36668 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | ||| || | || || ||||| | || | | || || || ||||| Sbjct 36667 AGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGG 36608 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||| ||| ||| || ||| || | ||||| || || || || ||| Sbjct 36607 ATTCCCTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACC 36548 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || |||||||| || |||||||| ||||| Sbjct 36547 TCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCAT 36501 >seq629 Length=499154 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 |||||||| |||||||||||||||| || | |||| ||| |||||| || ||||| | Sbjct 6162 GTAGACTCCTTTTGAATGTTGTAAT--CTGAGAGTGTACGTCCATCCTCTAGTTGTTTAC 6105 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| |||| || | ||| || || || || ||||| ||||||||| || ||| || Sbjct 6104 CAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTT 6045 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | || | ||||| | ||| || || | || | ||||| || || || | Sbjct 6044 TTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGG 5985 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || |||||||| ||||| Sbjct 5984 TCTTCACAAAAATTTGCAT 5966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432314037076756