Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq9501 113 8e-20 seq994 89.7 9e-13 >seq9501 Length=22347 Score = 113 bits (124), Expect = 8e-20 Identities = 233/344 (68%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 135600 AGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATAGAACT 135659 |||| |||| || |||| || ||| ||||||| || || || |||||||| || || Sbjct 15113 AGATGAAGATGAATGGAGAACTTGGCAAAAAATGAGTGACCCAGTGTTGCATATTGAGCT 15054 Query 135660 TAGGAGATGGGCGGATGTTTTTATTATAGCGCC-CTTAACGGCAAATACGTTAGCAAAAA 135718 || ||||||| ||||| | | || | || ||| | | | || || | || |||| Sbjct 15053 GAGACGATGGGCCGATGTCCTCGTGGTATCTCCTCTTGATG-CTAACACCATGGCCAAAA 14995 Query 135719 TAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACA 135778 || | ||| || || |||||| | | || | | | || || || ||||||| || | Sbjct 14994 TAAGCAGTGGCATTTGTGATAATCTTTTAACATGTGTAGTGAGGGCATGGGATATGAAGA 14935 Query 135779 AACCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTACAGAAA 135838 ||||||| | || || ||||| ||||| || | ||||||||| || || || |||| | Sbjct 14934 AACCACTGGTGTTTTGCCCTGCTATGAACACCCATATGTGGGATCACCCGATAACAGTCA 14875 Query 135839 AACATATAGATACGTTAAAATATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaC 135898 || || || | || ||| | | || | |||||| | || ||| || || Sbjct 14874 CCCAAATCGAAAAATTGAAAGAACTTGGATACATAGAGGTGCCTTGTGTAGCCAAGAAGT 14815 Query 135899 TAGCATGTGGAGACGTAGGAAATGGTGCTATGGCAGAAGTTGCA 135942 | |||||||| || || ||||||||||||| |||||| || Sbjct 14814 TGGCATGTGGTGATAGTGGTTATGGTGCTATGGCTGAAGTTCCA 14771 >seq994 Length=361151 Score = 89.7 bits (98), Expect = 9e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 45591 TTTGTAACAGTGCACCATTTTTCAGATTTTGTATCGTAGCATCCCATAAGAAAACTGGAT 45650 ||||||||||| |||||||||| | | |||||| |||||||| ||||| | || Sbjct 158414 TTTGTAACAGTACACCATTTTTTACTAGCAGGATCGTAACATCCCATCAGAAATATTGAC 158473 Query 45651 AAAATACCAGACTTGTTACCCTTTCCGTAATAAGCACCCAAAACTACTAGATCAGCTTTA 45710 | || ||| || || || |||| |||| || || | ||| || ||||||||| | Sbjct 158474 ATCATTCCACCTTTATTTCCAGTTCCAAAATATGCTCCAAGAACAACAAGATCAGCTGAA 158533 Query 45711 TCCGCCATAACACATCCATCTAAGTAGTCtttttttATTTTCAGCCA 45757 || ||||| | | | |||| ||| |||||||| ||||| ||||| Sbjct 158534 TCTGCCATTGCTCCATCTTCTAGGTAATCTTTTTTAATTTTTAGCCA 158580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919887220251720