Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10433 125 8e-24 seq3155 122 1e-22 seq629 116 4e-21 seq3613 114 1e-20 seq77675 113 5e-20 seq1598 113 5e-20 seq887 113 5e-20 seq80409 111 2e-19 seq5467 111 2e-19 seq4682 111 2e-19 seq196739 109 6e-19 seq3701 109 6e-19 seq647 109 6e-19 seq524 109 6e-19 seq4435 107 2e-18 seq1471 107 2e-18 seq8129 105 8e-18 seq256919 96.9 4e-15 seq100255 96.9 4e-15 seq14773 86.0 7e-12 seq1267 86.0 7e-12 seq263599 82.4 9e-11 >seq10433 Length=18727 Score = 125 bits (138), Expect = 8e-24 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| |||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 17111 AAATATTTACTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 17170 Query 60117 TCACCACTATACTACCGAGGATTGAATAT 60145 ||||||||||||||||||||| ||||||| Sbjct 17171 TCACCACTATACTACCGAGGAATGAATAT 17199 >seq3155 Length=145643 Score = 122 bits (134), Expect = 1e-22 Identities = 81/89 (91%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||| |||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 127522 AAATATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 127581 Query 60116 CTCACCACTATACTACCGAGGATTGAATA 60144 |||||||||||||||||||||||| |||| Sbjct 127582 CTCACCACTATACTACCGAGGATTAAATA 127610 >seq629 Length=499154 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42972 AACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCA 43031 || || | |||||| || |||||||||||| |||||||| | || || || | || Sbjct 6177 AAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAGAGTGTACGTCCATCC 6118 Query 43032 TCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 ||||| || |||||||| || || |||| ||| ||||| | || | || |||||||| Sbjct 6117 TCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCT 6058 Query 43092 ATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151 ||| ||| ||| | || | | ||||| || | ||||| || | ||||||||| Sbjct 6057 TGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTT 5998 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| ||||| |||||||| Sbjct 5997 TTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||| || ||||| |||| || || || | || || || || |||||||| || Sbjct 5928 TCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTCCAGTTGTTTACCAGCAAAG 5869 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || |||| ||| ||||| | || | || |||||||| ||| ||| ||| | || Sbjct 5868 ATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTC 5809 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || | ||||| || | ||||||||||| || || || ||||| ||| Sbjct 5808 TCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACA 5749 Query 43173 AAGATTTGCAT 43183 || |||||||| Sbjct 5748 AAAATTTGCAT 5738 >seq3613 Length=121273 Score = 114 bits (126), Expect = 1e-20 Identities = 85/97 (88%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 60053 TATGAAAAATTTT-CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111 || |||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 18386 TAAGAAAAACATTACTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 18445 Query 60112 CATACTCACCACTATACTACCGAGGATTGA-ATATAT 60147 ||||| ||||||||||||||||||| ||| |||||| Sbjct 18446 GATACTTACCACTATACTACCGAGGACTGACATATAT 18482 Score = 113 bits (124), Expect = 5e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 3030 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 3089 Query 60124 TATACTACCGAGGATTG 60140 |||||||||||||| || Sbjct 3090 TATACTACCGAGGACTG 3106 Score = 107 bits (118), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1085 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 1144 Query 60124 TATACTACCGAGGATTG 60140 |||||||| ||||| || Sbjct 1145 TATACTACAGAGGACTG 1161 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| || |||||||||| ||| |||| |||||||||||| ||| ||||||| Sbjct 62 TTCTCCCCGGCGGGTAATCGAACCCCGGTTTCCCTCGTGACAGGCGGGGATATTCACCAC 121 Query 60124 TATACTACCGAGGATTGAATATATAACTTG 60153 |||||||||||||| || || ||| ||| Sbjct 122 TATACTACCGAGGACTGGTAATTTAAATTG 151 >seq77675 Length=3689 Score = 113 bits (124), Expect = 5e-20 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 3287 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 3346 Query 60124 TATACTACCGAGGATTGAATATATAACTTG 60153 |||||||||||||| || || ||| ||| Sbjct 3347 TATACTACCGAGGACTGGTAATTTAAATTG 3376 >seq1598 Length=271001 Score = 113 bits (124), Expect = 5e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 128008 TTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 127949 Query 60123 CTATACTACCGAGGATT 60139 ||||||||||||||||| Sbjct 127948 CTATACTACCGAGGATT 127932 >seq887 Length=403026 Score = 113 bits (124), Expect = 5e-20 Identities = 76/85 (89%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 337300 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 337241 Query 60125 ATACTACCGAGGATTGAATATATAA 60149 ||||||||||| |||||||||| Sbjct 337240 ATACTACCGAG----GAATATATAA 337220 >seq80409 Length=1700 Score = 111 bits (122), Expect = 2e-19 Identities = 76/85 (89%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 60056 GAAAAATTT---TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||||||| | ||||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 1327 GAAAAATATAACTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 1268 Query 60113 ATACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||||||| Sbjct 1267 ATACTCACCACTATACTACCGAGGA 1243 >seq5467 Length=66102 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| || |||| |||| ||| | || |||||||| |||||||| |||| Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || ||||| | || || || || ||||| || || ||||||| |||||||| | || Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||||| ||| |||||| ||| | || | | || || || | ||| || Sbjct 29941 ATACCTTCTTTGTCT-TGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTAC 29999 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || ||||||||||| ||||| || || |||||||| ||||| Sbjct 30000 TTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 >seq4682 Length=86729 Score = 111 bits (122), Expect = 2e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 79778 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 79837 Query 60124 TATACTACCGAGGATT 60139 |||||||||||||||| Sbjct 79838 TATACTACCGAGGATT 79853 >seq196739 Length=503 Score = 109 bits (120), Expect = 6e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 || || |||| |||| ||||||| |||||||||||||||||||| |||||| ||||||| Sbjct 472 AACTTACTCCCCGGCGGGGAATCTAACCCTGGTCTCCCGCGTGATAGGCGGGGATACTCA 413 Query 60120 CCACTATACTACCGAGGATT 60139 |||||||||||||||||||| Sbjct 412 CCACTATACTACCGAGGATT 393 >seq3701 Length=112886 Score = 109 bits (120), Expect = 6e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 || || |||| |||| ||||||||||||| ||||| ||||||||||||||| ||||||| Sbjct 410 AACTTACTCCCCGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGGGATACTCA 351 Query 60120 CCACTATACTACCGAGGATT 60139 |||||||||||||||||||| Sbjct 350 CCACTATACTACCGAGGATT 331 >seq647 Length=489208 Score = 109 bits (120), Expect = 6e-19 Identities = 74/82 (90%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTT-CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 || ||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 135680 AATAATTTCACTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 135621 Query 60116 CTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||| Sbjct 135620 CTCACCACTATACTACCGAGGA 135599 >seq524 Length=543868 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 204761 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 204702 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 204701 TATACTACCGAGGAT 204687 >seq4435 Length=89394 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| ||| || || |||||| |||||||||||||| | || || || | || || Sbjct 36025 ACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGACAAGGTACGTCCATCTTCC 35966 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||| ||||| || || | || || || || | || | | |||||| || | Sbjct 35965 AACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATTCCCTCCTTATCTTGG 35906 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 ||||| ||||| || | | |||||||| | || || || | ||||| || ||| Sbjct 35905 ATTTTAGCTTTGACGTTCTCTATGGTGTCGCTAGGCTCTACCTCCAAAGTGATTGTCTTG 35846 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || ||||||||||||||||| || |||||||| Sbjct 35845 CCTGTTAGCGTCTTTACAAATATCTGCATTTT 35814 >seq1471 Length=275221 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3486 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3427 Query 60126 TACTACCGAGGATT 60139 |||||||||||||| Sbjct 3426 TACTACCGAGGATT 3413 >seq8129 Length=34426 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| |||| | ||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 8947 TTTCTCCCCGGCGGTGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 8888 Query 60123 CTATACTACCGAGGAT 60138 |||||||||||||||| Sbjct 8887 CTATACTACCGAGGAT 8872 >seq256919 Length=264 Score = 96.9 bits (106), Expect = 4e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCG 60133 |||| |||||||||| |||||||||||||||||| || ||||||||||||||||||||| Sbjct 209 CAGGTAATCGAACCCAGGTCTCCCGCGTGACAGGTGGGGATACTCACCACTATACTACCG 150 Query 60134 AGGATT 60139 |||||| Sbjct 149 AGGATT 144 >seq100255 Length=840 Score = 96.9 bits (106), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 ||| |||| |||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 840 TCCCCGGCGGGGAATCGAACCGCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTAT 781 Query 60127 ACTACCGAGGA 60137 ||||| ||||| Sbjct 780 ACTACAGAGGA 770 >seq14773 Length=6164 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 || || |||| | | || |||| ||| | ||||||||||||||| ||||| ||||||| Sbjct 343 AACTTACTCCCCAACTGGAAATCAAACGCCGGTCTCCCGCGTGACGGGCGGGGATACTCA 284 Query 60120 CCACTATACTACCGAGGATT 60139 |||||||||||||||||||| Sbjct 283 CCACTATACTACCGAGGATT 264 >seq1267 Length=316221 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | || ||| || || | ||| ||| ||||||||||||||||||| Sbjct 205975 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206034 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| | | || || | |||||| || || || || | | |||||||| | || Sbjct 206035 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGG 206094 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||| || ||| |||||| || | | | | ||||| || | ||| || Sbjct 206095 ATCCCCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAACT 206154 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || || || ||||| |||||||| ||||| Sbjct 206155 TCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 >seq263599 Length=240 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/57 (93%), Gaps = 1/57 (2%) Strand=Plus/Minus Query 60083 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATT 60139 |||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||| Sbjct 214 GAACCCCGGTCTCC-GCGTGACAGGCGGAAATACTCACCACTATACTACCGACGATT 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569767683938040