Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5467 109 8e-19 seq4435 107 3e-18 seq1267 100 4e-16 seq397 100 4e-16 seq1156 98.7 1e-15 seq2201 93.3 6e-14 >seq5467 Length=66102 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| | ||||||| || | ||| |||||||||||||| ||||||||||| Sbjct 29590 GTTCCACCACGCAGTCTTAGGACAAGATGCAAAGTAGATTCTTTCTGAATATTATAATCA 29649 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||| || | | ||| || | ||||| || |||||||||| ||| || || || || Sbjct 29650 GAAAGGGTCCGTCCATCCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGTCAGGT 29709 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| |||||||| ||||| Sbjct 29710 GGAATGCCTTCTTTGTCTTG 29729 >seq4435 Length=89394 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| | |||| |||||||||||| || || ||||| |||||||| Sbjct 36043 CCACCACGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGAC 35984 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || || || ||||||||||| || |||||||| ||||| || ||| Sbjct 35983 AAGGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 35924 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || |||||||| Sbjct 35923 ATTCCCTCCTTATCTTG 35907 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || || | || || || | ||||| ||||| || |||||||||| Sbjct 36501 TTCCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTG 36442 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | |||||||| | ||| ||||| |||||||| ||||| || || || || || || || | Sbjct 36441 ACAGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTG 36382 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||||||||| || Sbjct 36381 GAATTCCTTCTTTATCCTG 36363 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 |||||||||||||| | || | | ||| ||||||||||| || ||||||||||||||| Sbjct 32836 ATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAATCAATCTT 32777 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| || ||||||||||||||||| || Sbjct 32776 TGTTGATCTGGTGGAATTCCTTCTTTATCCTG 32745 Score = 100 bits (110), Expect = 4e-16 Identities = 146/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| || | || || || || |||||||||||||| | || | | ||| || Sbjct 36254 TACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATCTGATAAGGTGCGACCATCTTC 36195 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| || ||||||||||||||||| ||||| || |||||||||||||||||||| Sbjct 36194 CAACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCTTG 36135 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACT---TTCTACTTCTAGTGTGATTGT 146244 |||||| ||| ||| ||||| || || ||||| Sbjct 36134 AATTTTGGCTTTTACATTTTCAATAGTATC---ACTGGGTTCAACTTCCAGAGTAATTGT 36078 Query 146245 TTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| || || | |||||||| || |||||||| Sbjct 36077 TTTTCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 146060 AGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTG 146119 ||||| | |||||| || | || |||||||| || || |||||||| || ||||| Sbjct 36718 AGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAGGGTTCTT 36659 Query 146120 CTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCT 146179 | ||| || ||||| || ||||||||||| || ||||| || || ||||| ||||| || Sbjct 36658 CCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGATTCCCTCC 36599 Query 146180 TTATCTTG 146187 |||||||| Sbjct 36598 TTATCTTG 36591 >seq1267 Length=316221 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 146060 AGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTG 146119 ||||| || || | ||| | |||||||||||| || ||||| ||||| | || | Sbjct 206440 AGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGA 206499 Query 146120 CTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCT 146179 | ||| || || ||||||||||||||||| ||||| || || || || |||||||||||| Sbjct 206500 CCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCT 206559 Query 146180 TTATCTTG 146187 || ||||| Sbjct 206560 TTGTCTTG 206567 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || || | || || || | || || ||||| ||||| ||||| || Sbjct 206203 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206262 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| || || || ||||| ||||||||||| || ||||| || ||||| Sbjct 206263 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGG 206322 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| Sbjct 206323 ATTCCTTCTTTGTCTTG 206339 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || || | || || || | || || ||||| ||||| ||||| || Sbjct 205975 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206034 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| || || || ||||| ||||||||||| |||||||| || ||||| Sbjct 206035 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGG 206094 Query 146171 ATTCCTTCTTTATCTTG 146187 || || |||||||| || Sbjct 206095 ATCCCCTCTTTATCCTG 206111 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | | ||| ||||| || || | || || || || ||| ||||||||||| Sbjct 205747 CCACCACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGAC 205806 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || | ||| || ||||||||||| || || ||||| || ||||| Sbjct 205807 AAGGTTCTTCCATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGG 205866 Query 146171 ATTCCTTCTTTATCTTG 146187 || || |||||||| || Sbjct 205867 ATCCCCTCTTTATCCTG 205883 >seq397 Length=648652 Score = 100 bits (110), Expect = 4e-16 Identities = 165/236 (70%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496 || ||||||| |||| ||| ||| | ||| || ||||| | ||| | ||||||||| | Sbjct 538875 GGTTGTTATGGAAGAATAGTTCCAAAATCAGAATTAGCAATCAATCATTTTATTGATGTA 538816 Query 10497 GGAGCTGGAGTAATTGACGAA--GATTATAGAGGAAATGTGGGAGTAATATTATTTAATC 10554 ||||||||| |||||| || |||||||||||||||||| | | ||| ||||||| Sbjct 538815 GGAGCTGGAAGAATTGAAAAACAGATTATAGAGGAAATGTGCAAATCGTATCATTTAATT 538756 Query 10555 ATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAA 10614 | ||| | ||| | ||| | | ||| ||| ||| |||| ||| || ||||| Sbjct 538755 CTGGAAATAACAATTCTCAAATTACAAAGGGAAATAAAATTACTCATTTAGTAAGTGAAC 538696 Query 10615 AAATTTTATATCCTAAAATGTTAA---AAGTCGATAGTTTATCAGAAACAAAAAGA 10667 | || | ||||| || ||||| | || || |||| | ||||| ||||| Sbjct 538695 AGATATACTATCCGAA---GTTAATTGAGGTGGAAAGTTCAGATGAAACTGAAAGA 538643 >seq1156 Length=327524 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || | || || | ||| | ||| || ||||| ||||| |||||||| Sbjct 17718 CCACCACGTAGACGTAGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGAT 17659 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| |||| || ||||| ||||| || ||||| || ||||| || ||| Sbjct 17658 AGTGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGA 17599 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 17598 ATTCCTTCTTTATCTTG 17582 >seq2201 Length=213340 Score = 93.3 bits (102), Expect = 6e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||||| || || || | ||||||||| || || || ||||| || Sbjct 161613 CCACCTCTTAATCTTAGAACTAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAC 161554 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| || ||| || | || ||||||||||| |||| ||| ||||| || |||||| Sbjct 161553 AGAGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGA 161494 Query 146171 ATTCCT 146176 || ||| Sbjct 161493 ATACCT 161488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740860922914560