Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq5467 109 8e-19
seq4435 107 3e-18
seq1267 100 4e-16
seq397 100 4e-16
seq1156 98.7 1e-15
seq2201 93.3 6e-14
>seq5467
Length=66102
Score = 109 bits (120), Expect = 8e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
|||||||| | ||||||| || | ||| |||||||||||||| |||||||||||
Sbjct 29590 GTTCCACCACGCAGTCTTAGGACAAGATGCAAAGTAGATTCTTTCTGAATATTATAATCA 29649
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
||||| || | | ||| || | ||||| || |||||||||| ||| || || || ||
Sbjct 29650 GAAAGGGTCCGTCCATCCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGTCAGGT 29709
Query 146168 GGAATTCCTTCTTTATCTTG 146187
||||| |||||||| |||||
Sbjct 29710 GGAATGCCTTCTTTGTCTTG 29729
>seq4435
Length=89394
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | |||||| | |||| |||||||||||| || || ||||| ||||||||
Sbjct 36043 CCACCACGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGAC 35984
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| || | | ||| || || || ||||||||||| || |||||||| ||||| || |||
Sbjct 35983 AAGGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 35924
Query 146171 ATTCCTTCTTTATCTTG 146187
||||| || ||||||||
Sbjct 35923 ATTCCCTCCTTATCTTG 35907
Score = 107 bits (118), Expect = 3e-18
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||| ||||| || || | || || || | ||||| ||||| || ||||||||||
Sbjct 36501 TTCCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTG 36442
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| |||||||| | ||| ||||| |||||||| ||||| || || || || || || || |
Sbjct 36441 ACAGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTG 36382
Query 146169 GAATTCCTTCTTTATCTTG 146187
|||||||||||||||| ||
Sbjct 36381 GAATTCCTTCTTTATCCTG 36363
Score = 104 bits (114), Expect = 3e-17
Identities = 78/92 (85%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155
|||||||||||||| | || | | ||| ||||||||||| || |||||||||||||||
Sbjct 32836 ATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAATCAATCTT 32777
Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
|| ||||| || ||||||||||||||||| ||
Sbjct 32776 TGTTGATCTGGTGGAATTCCTTCTTTATCCTG 32745
Score = 100 bits (110), Expect = 4e-16
Identities = 146/213 (69%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127
|||||| || | || || || || |||||||||||||| | || | | ||| ||
Sbjct 36254 TACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATCTGATAAGGTGCGACCATCTTC 36195
Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
|| ||||| || ||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 36194 CAACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCTTG 36135
Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACT---TTCTACTTCTAGTGTGATTGT 146244
|||||| ||| ||| ||||| || || |||||
Sbjct 36134 AATTTTGGCTTTTACATTTTCAATAGTATC---ACTGGGTTCAACTTCCAGAGTAATTGT 36078
Query 146245 TTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||| || || | |||||||| || ||||||||
Sbjct 36077 TTTTCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045
Score = 100 bits (110), Expect = 4e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 146060 AGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTG 146119
||||| | |||||| || | || |||||||| || || |||||||| || |||||
Sbjct 36718 AGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAGGGTTCTT 36659
Query 146120 CTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCT 146179
| ||| || ||||| || ||||||||||| || ||||| || || ||||| ||||| ||
Sbjct 36658 CCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGATTCCCTCC 36599
Query 146180 TTATCTTG 146187
||||||||
Sbjct 36598 TTATCTTG 36591
>seq1267
Length=316221
Score = 100 bits (110), Expect = 4e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 146060 AGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTG 146119
||||| || || | ||| | |||||||||||| || ||||| ||||| | || |
Sbjct 206440 AGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGA 206499
Query 146120 CTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCT 146179
| ||| || || ||||||||||||||||| ||||| || || || || ||||||||||||
Sbjct 206500 CCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCT 206559
Query 146180 TTATCTTG 146187
|| |||||
Sbjct 206560 TTGTCTTG 206567
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| ||||| || || | || || || | || || ||||| ||||| ||||| ||
Sbjct 206203 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206262
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| |||||| | ||| || || || ||||| ||||||||||| || ||||| || |||||
Sbjct 206263 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGG 206322
Query 146171 ATTCCTTCTTTATCTTG 146187
||||||||||| |||||
Sbjct 206323 ATTCCTTCTTTGTCTTG 206339
Score = 89.7 bits (98), Expect = 8e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| ||||| || || | || || || | || || ||||| ||||| ||||| ||
Sbjct 205975 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206034
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| |||||| | ||| || || || ||||| ||||||||||| |||||||| || |||||
Sbjct 206035 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGG 206094
Query 146171 ATTCCTTCTTTATCTTG 146187
|| || |||||||| ||
Sbjct 206095 ATCCCCTCTTTATCCTG 206111
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | | ||| ||||| || || | || || || || ||| |||||||||||
Sbjct 205747 CCACCACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGAC 205806
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||||| | ||| || | ||| || ||||||||||| || || ||||| || |||||
Sbjct 205807 AAGGTTCTTCCATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGG 205866
Query 146171 ATTCCTTCTTTATCTTG 146187
|| || |||||||| ||
Sbjct 205867 ATCCCCTCTTTATCCTG 205883
>seq397
Length=648652
Score = 100 bits (110), Expect = 4e-16
Identities = 165/236 (70%), Gaps = 8/236 (3%)
Strand=Plus/Minus
Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496
|| ||||||| |||| ||| ||| | ||| || ||||| | ||| | ||||||||| |
Sbjct 538875 GGTTGTTATGGAAGAATAGTTCCAAAATCAGAATTAGCAATCAATCATTTTATTGATGTA 538816
Query 10497 GGAGCTGGAGTAATTGACGAA--GATTATAGAGGAAATGTGGGAGTAATATTATTTAATC 10554
||||||||| |||||| || |||||||||||||||||| | | ||| |||||||
Sbjct 538815 GGAGCTGGAAGAATTGAAAAACAGATTATAGAGGAAATGTGCAAATCGTATCATTTAATT 538756
Query 10555 ATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAA 10614
| ||| | ||| | ||| | | ||| ||| ||| |||| ||| || |||||
Sbjct 538755 CTGGAAATAACAATTCTCAAATTACAAAGGGAAATAAAATTACTCATTTAGTAAGTGAAC 538696
Query 10615 AAATTTTATATCCTAAAATGTTAA---AAGTCGATAGTTTATCAGAAACAAAAAGA 10667
| || | ||||| || ||||| | || || |||| | ||||| |||||
Sbjct 538695 AGATATACTATCCGAA---GTTAATTGAGGTGGAAAGTTCAGATGAAACTGAAAGA 538643
>seq1156
Length=327524
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | || | || || | ||| | ||| || ||||| ||||| ||||||||
Sbjct 17718 CCACCACGTAGACGTAGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGAT 17659
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | ||| |||| || ||||| ||||| || ||||| || ||||| || |||
Sbjct 17658 AGTGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGA 17599
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||||||||||||
Sbjct 17598 ATTCCTTCTTTATCTTG 17582
>seq2201
Length=213340
Score = 93.3 bits (102), Expect = 6e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||||| || || || | ||||||||| || || || ||||| ||
Sbjct 161613 CCACCTCTTAATCTTAGAACTAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAC 161554
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
||||||| || ||| || | || ||||||||||| |||| ||| ||||| || ||||||
Sbjct 161553 AGAGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGA 161494
Query 146171 ATTCCT 146176
|| |||
Sbjct 161493 ATACCT 161488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740860922914560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |