Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3845 104 2e-17 seq5418 100 3e-16 seq6658 87.8 2e-12 >seq3845 Length=110360 Score = 104 bits (114), Expect = 2e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 ||||| | ||| ||||| || |||| || |||| ||| ||||| | |||||||| ||| Sbjct 72956 AATGTCAAACCAGGCATCAGACCTCTCTTCTTAAGCCAGAATATTGATGCAAATGACCCA 72897 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT---TCTA 16402 ||||||||||| || || || || ||||| || || | ||||||||| | || | || Sbjct 72896 GAAAAGAATATGCCCTCCACAGCAGCAAAGGCTACAACTCGCTCACCAAAAGTAGCTGTA 72837 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 | || ||||||| || |||||||| |||||| | || ||||| || | | Sbjct 72836 GGATGAC---CTATCCAGTTGAGAGCCCAATCTGCTTTCTTCTTCACACAAGGCAAGGTT 72780 Query 16463 TCTATTGCATTAAA 16476 || |||||||| || Sbjct 72779 TCAATTGCATTGAA 72766 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684 ||||| ||||| || ||||| ||||| ||||| || || || ||||| |||||| | | Sbjct 71034 TTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTGT 70975 Query 16685 ttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCT 16744 | ||| | ||| | || ||| | | ||||| || | ||| || |||||| Sbjct 70974 TGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTCT 70915 Query 16745 ACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATA 16804 |||||||| || ||||| | || || |||||||| | ||| |||||| ||| |||| Sbjct 70914 ACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAATG 70855 Query 16805 GGAAACACAACA 16816 ||||| | |||| Sbjct 70854 GGAAAAATAACA 70843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 ||||| || || | |||||| |||| || ||| || ||||||||||| || ||| |||| Sbjct 75240 TTATCACAGCCTAGTTCCAATAATAGTCGATCGGCAACAAATTCTATGTATTGTCTCATC 75181 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 || | ||| ||||| || ||||| ||| || | || ||||||| || | || ||| Sbjct 75180 AACTGACAATTCATGCCAATTAAAGCAACTGGCAGAGCATCTGTTAGGAACTCTTGTTCA 75121 Query 16160 ATATTAACCGCTTC 16173 || || || ||||| Sbjct 75120 ATCTTCACAGCTTC 75107 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || || || || |||| ||||| |||||||||||||| | ||| || || || || || Sbjct 72335 ATGTATGTGTCAATTAACAAACTGTACATTTCTGAATGGACATTTTCAATGGCAATTTGG 72276 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||||||||| || |||||||| | || ||| ||||| Sbjct 72275 AAACCATAAAAACACCTAGCTTCTGTTACTTGAACTTC 72238 >seq5418 Length=65370 Score = 100 bits (110), Expect = 3e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTG-ACATT 15943 ||||||||||| || |||| |||| || |||| || | ||| ||| ||| | Sbjct 9216 TTTAAAAATCAGCGTCAAGAGTAAACTTATGCTCTTCCCGTTTAGCCATGACTCCACACT 9157 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 | | ||||||||| ||| ||||||||||||| || || || ||||| || ||||||| | Sbjct 9156 TCT-GATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGT 9098 Query 16004 TCCATAAAATCAAAAGGATTTT 16025 |||||||||||||| ||||||| Sbjct 9097 TCCATAAAATCAAATGGATTTT 9076 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || || || || |||| ||||||||||||||||| |||| ||| || || || || || Sbjct 7515 ATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACATTTTCAATGGCAATTTGG 7456 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||||||||| || |||||||||| || || ||||| Sbjct 7455 AAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTC 7418 >seq6658 Length=47451 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 |||| | ||||||| |||| ||| | || || || ||||||||||||||||||||||| Sbjct 23905 TTATTGAATCCCAACTCCACCAACAGTCGGTCAGCAACAAATTCTATATACTGTTTCATA 23964 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 | |||||| ||||| || |||| ||| |||| || || || | ||| | | ||| Sbjct 23965 AGATCACAATTCATGCCAATTAGGGCAACTGGGAGGGCATCCGTCAGAAACTCCTGCTCT 24024 Query 16160 ATATTAACCGCTTCAATGATTAT 16182 || || || || ||| ||| || Sbjct 24025 ATCTTCACGGCGTCACCGATGAT 24047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||||| | || |||| || ||||| |||||||||||||||| |||||||| | Sbjct 23487 TTTGATATTCTCCTACCTTCTTCTCGAAGAAGTTTGTTTTTCCTTCTAGTGAAATATGCT 23546 Query 16005 CCATAAAATCAAAAGGATTTT 16025 ||||||| ||||| || |||| Sbjct 23547 CCATAAAGTCAAAGGGGTTTT 23567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460853934949800