Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq994 140 3e-28 seq3845 127 2e-24 seq5418 93.3 4e-14 seq6658 89.7 5e-13 >seq994 Length=361151 Score = 140 bits (154), Expect = 3e-28 Identities = 327/486 (67%), Gaps = 7/486 (1%) Strand=Plus/Minus Query 121486 TTAGAAGGGTTGATATTAAAAGGAATAAATATCGATTATGTACCTGGAAAAAGAGGTTGG 121545 ||||||||| | | | ||||| | ||| | | |||| || |||||| || |||| Sbjct 158637 TTAGAAGGGCTAGTTCTGAAAGGCACAAACAACACGTATGAGCCAGGAAAACGACATTGG 158578 Query 121546 TTAAAGATGAAGAAGGATTACTTAGATGATGGATCCATGGCAGATTCTGCAGACTTAGTA 121605 |||| || || || |||||| |||| |||||| | ||||||||||| || || | || Sbjct 158577 CTAAAAATTAAAAAAGATTACCTAGAAGATGGAGCAATGGCAGATTCAGCTGATCTTGTT 158518 Query 121606 GTTTTAGGATCATATTACGGTAAAGGGTCTAAGGGTGGTGCGCCATCAATATTTTTAATG 121665 ||| | ||| |||||| || | || ||| ||||| | ||||||||| | ||| Sbjct 158517 GTTCTTGGAGCATATTTTGGAACTGGAAATAAAGGTGGAATGATGTCAATATTTCTGATG 158458 Query 121666 GGGTGCTATGATAATGAAAGTAATAATTGGAAAACGGTAACTAAA-TGC--TCTGGCCAC 121722 || || || ||| || ||||| || ||| || || || ||| ||| || || Sbjct 158457 GGATGTTACGATCCTGCTAGTAAAAAATGGTGTACTGTTACAAAAGTGCATGGAGGACAT 158398 Query 121723 GACGATGACACATTaaaaaaagtacaaaaagaaatagagtttttaaaaattagtaaagat 121782 || |||| || || ||||| | |||| || | || | ||||||||| || || Sbjct 158397 GATGATGCTACTTTTGAAAAACTCCAAACTGAGCTGGACATGAAAAAAATTAGGAAGGAC 158338 Query 121783 acaaaaaaaatcccaaaaTGGTTAATAGTAGATAAAA-TATATTATCCAGATTTTGTAGT 121841 ||| ||| | || ||| | | ||| |||||| | | | ||| |||||||| | Sbjct 158337 CCAAGTAAAGTTCCTGCTTGGCTGAAAGTGAATAAAACTCTCAT-TCCTGATTTTGTTGC 158279 Query 121842 TTGTGATCCaaaaaaaTCACAGGTGTGGGAAATATCGGGATCTAGTTTTACAAAATCGAT 121901 | |||||| ||||| || | || |||||||| ||| | ||||||||| | | Sbjct 158278 TAATGATCCTAAAAACTCCCCAGTATGGGAAATTGTTGGAGCAGAATTTACAAAAGC-AG 158220 Query 121902 ACAT-CACACAGCAGATGGGATTTCGATAAGATTTCCTAGATTTaaaaaaaTTAGATATG 121960 | || || ||||| |||| || || || | ||||| ||| || |||||| || ||| Sbjct 158219 AAATCCATACAGCCAATGGAATCTCTATTCGTTTTCCAAGAGTTGCAAAAATCCGAGATG 158160 Query 121961 ATAAAA 121966 | |||| Sbjct 158159 ACAAAA 158154 >seq3845 Length=110360 Score = 127 bits (140), Expect = 2e-24 Identities = 172/239 (72%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 14216 CAATGAAGGC---CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 14272 ||| |||||| ||||||||||||| |||||||| || ||||| || || |||||| Sbjct 72998 CAAAGAAGGCTTACCTCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATC 72939 Query 14273 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 14332 | |||| || || | ||| ||||||| || ||||| || ||||||||||| ||||| Sbjct 72938 AGACCTCTCTTCTTAAGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCC 72879 Query 14333 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14392 || |||||||| |||| | ||| || ||||| | ||| | | |||||| || Sbjct 72878 ACAGCAGCAAAGGCTACAACTCGCTCACCAAAAGTAGCTGTAGGATGACCTATCCAGTTG 72819 Query 14393 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATG 14451 |||||| || | ||| || || | | || || |||||||| ||||| || | ||| Sbjct 72818 AGAGCCCAATCTGCTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGATG 72760 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 14593 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14652 |||||||||||| || ||||||||||| ||||| || |||| |||| |||||||| Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976 Query 14653 TTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATC 14712 ||| || || | | | || | ||| | | || || || ||||| ||||| || Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTC 70916 Query 14713 AACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATAT 14772 || ||||| || ||| | ||||| |||||||| ||| || ||| ||| || Sbjct 70915 TACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAAT 70856 Query 14773 AGGAAAAACTACAAATCT 14790 ||||||| |||||||| Sbjct 70855 GGGAAAAATAACAAATCT 70838 >seq5418 Length=65370 Score = 93.3 bits (102), Expect = 4e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 || |||||||||| ||| | |||||||||||||| || || ||||||| || |||| | Sbjct 9157 TTCTGATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGT 9098 Query 13973 TCCATAAAATCAAATGGATTT 13993 ||||||||||||||||||||| Sbjct 9097 TCCATAAAATCAAATGGATTT 9077 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 14594 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14653 |||||||||||||| ||||||||||| ||||| || ||||| | | |||||||| | Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860 Query 14654 TGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14713 ||||||| | | | || ||| || || |||||| || | || ||||| || Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800 Query 14714 ACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATA 14773 |||||||||| ||| | || | || ||||| ||| || ||| ||| || Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740 Query 14774 GGAAAAACTACAAATCTT 14791 ||||| | |||||| ||| Sbjct 6739 GGAAACATTACAAACCTT 6722 >seq6658 Length=47451 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 14283 |||||||||| || || |||||||| ||||| || || || ||||||| ||| | || Sbjct 24834 CCTCATCTCTGCTTATCAGTTCGTTACTGAAA--GTCAAGCCAGGCATCATTCCCCTCTT 24891 Query 14284 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14343 |||||||| || || | || || || || |||||||| || || || || ||||| || Sbjct 24892 CTTTAACCAGAAGATAGAGGCAAAGGAACCCGAAAAGAAGATCCCTTCTACAGCAGCGAA 24951 Query 14344 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14403 |||| | ||| || ||| | || ||||| ||||| || ||||| || Sbjct 24952 GGCTACAAGTCGCTCAGGAAATGGGGCAGCATTGTTATCAATCCAGTTCAGGGCCCAATC 25011 Query 14404 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 || || || |||| | | | |||||||||||||| || Sbjct 25012 AGCCTTCTTCTTAACACAGGGTAAGGTTTCAATAGCATTGAA 25053 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 14589 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14648 |||| || || | ||||| ||||||||||| ||||| || ||||| | || || |||| Sbjct 26426 CCAAGTTCTCCATCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAA 26485 Query 14649 AGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14708 ||| | |||||| | | || |||||||| | | || ||||| | || |||| Sbjct 26486 AGTGTCTTTCTTCAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTT 26545 Query 14709 CATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14768 | ||| | ||||| || ||| | ||||| || ||||| |||| || ||| || Sbjct 26546 CTTCAGCAGTCCAGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACT 26605 Query 14769 ATATAGGAAAAACTACAAATC 14789 || || |||| |||||||| Sbjct 26606 CAATTGGTAAAATTACAAATC 26626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480616433229240