Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4435 113 4e-20 seq1267 105 6e-18 seq6658 102 7e-17 seq629 98.7 9e-16 seq1632 87.8 2e-12 seq3845 82.4 7e-11 >seq4435 Length=89394 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||||||||| ||||| |||||| | || || ||||| Sbjct 36501 ATGCAAATTTTTGTTAAGACTCTGACAGGAAAAACCATCACCCTTGAGGTAGAACCCAGT 36560 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| || ||| | || || ||||| || | || || ||||| Sbjct 36561 GATACAATCGAAAATGTGAAAGCTAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCAA 36620 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| || ||||| || || |||||||| | || || ||||| ||| Sbjct 36621 CAAAGGTTAATTTTTGCTGGGAAGCAATTGGAAGATGGAAGAACCCTGTCAGATTACAAC 36680 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| |||||||| || ||||| ||||||| |||||| | || || Sbjct 36681 ATTCAGAAAGAATCAACCCTTCACTTGGTACTGAGACTGCGTGGAGG 36727 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || ||||| |||||||| || || ||| |||| |||||||| Sbjct 36272 CATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAG 36331 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| || ||| | ||| ||| || ||||| | || || ||||| Sbjct 36332 TGACACTATTGAAAATGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGACCA 36391 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | |||| || || || |||||||| ||||| | ||| || |||||||| Sbjct 36392 ACAGAGGTTAATCTTTGCAGGAAAACAGTTAGAAGATGGGAGAACTCTGTCAGATTATAA 36451 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || ||||| || || ||||| | || || || || || || || Sbjct 36452 CATCCAGAAAGAGTCTACACTTCACTTAGTCCTGAGGCTCAGAGGAGG 36499 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || |||||||| || |||||||| || ||||| | || || || || Sbjct 35814 AAAATGCAGATATTTGTAAAGACGCTAACAGGCAAGACAATCACTTTGGAGGTAGAGCCT 35873 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | || | |||||| | ||| || ||||| || | || || || Sbjct 35874 AGCGACACCATAGAGAACGTCAAAGCTAAAATCCAAGATAAGGAGGGAATTCCACCTGAT 35933 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || || | |||| || ||||| || ||||||||||| | | | || || ||||| Sbjct 35934 CAACAAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGA-TGGACGTACCTTGTCAGATTA 35992 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||| || || || ||| | |||||||| || ||||| Sbjct 35993 CAATATTCAGAAGGAGTCTACTTTACATCTGGTTCTGAGACT 36034 >seq1267 Length=316221 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || ||||| || || ||||| ||||| ||||| | || || || || Sbjct 206657 ATGCAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAGT 206598 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | ||| ||||| ||||| | || || ||||| Sbjct 206597 GACACCATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAA 206538 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | |||| || ||||| ||||||||||| || | || || || |||||| Sbjct 206537 CAGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAGACTATAAC 206478 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||||||| ||||||||||| || | ||||| Sbjct 206477 ATTCAAAAAGAATCTACTCTTCATCTAGTGTTGAGACT 206440 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || |||||||||||||| ||||| |||||| | || |||||||| Sbjct 205974 CATGCAAATCTTTGTTAAGACTCTGACAGGTAAAACCATCACCCTGGAAGTTGAACCAAG 205915 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| || || | ||| ||| || || || | || || ||||| Sbjct 205914 TGACACTATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAGGGGATCCCTCCAGACCA 205855 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | |||| || |||||||| || |||| || | || || |||||||| Sbjct 205854 GCAGAGGTTAATTTTTGCTGGCAAGCAACTGGAGGATGGAAGAACCTTGTCAGATTATAA 205795 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || ||||| || || | ||| | ||| || | || ||| Sbjct 205794 CATACAGAAGGAGTCGACCCTCCACTTAGTATTGAGATTGCGTGGTGGT 205746 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || |||||||||||||| ||||| |||||| | || |||||||| Sbjct 206202 CATGCAGATCTTTGTTAAGACTCTGACAGGTAAAACTATCACCCTGGAAGTTGAACCAAG 206143 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| || || | ||| ||| || || || | || || ||||| Sbjct 206142 TGACACTATTGAAAACGTAAAGGCTAAAATCCAGGATAAAGAGGGGATCCCTCCAGACCA 206083 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || || || || || ||||||||||| | ||| | ||||| || Sbjct 206082 GCAAAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAA 206023 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||| || || ||||| | || || || || || || || Sbjct 206022 TATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 205975 >seq6658 Length=47451 Score = 102 bits (112), Expect = 7e-17 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 |||| |||| || | | || || | ||||||| || || || ||||| || ||||| Sbjct 26654 GAACTACTTCTGACAAAAAACCCAGGACGATTTGTAATTTTACCAATTGAGTACCCAGAT 26595 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| || ||||| || || || ||||| | |||||||| ||| || Sbjct 26594 ATTTGGGATATGTACAAGAAAGCAGAGGCTTCCTTCTGGACTGCTGAAGAAGTGGACTTG 26535 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAA---GAATCTGAGAGAAATTTTATTAAA 57686 ||||| || | |||||| | | ||| ||| || ||| | ||||| || Sbjct 26534 TCTAAAGACATTCCAGATTGGAACAAGTTAAAACCTGAA---GAAAGACACTTTATAAAT 26478 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 ||||||||||| || || || || ||||| || || | ||||| ||||| Sbjct 26477 CACGTGTTGGCCTTCTTTGCTGCTAGTGATGGAATAGTGATGGAGAACTTGGT 26425 >seq629 Length=499154 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || ||||| || || || ||||| ||||| | || || || || Sbjct 5737 CATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAG 5796 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | || | || ||| || ||| | |||||||||||| | || || |||| Sbjct 5797 TGACACAATAGAGAATGTAAAAGCAAAGA-TCCAAGACAAGGAAGGCATCCCACCTGACC 5855 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTA 31368 | ||| | || || || ||||| ||||| |||| || || | ||| | | | || Sbjct 5856 AACAGAGACTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGAACACTTTCTG--ACTA 5913 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||||||||| || || |||||||| | || |||||||| || Sbjct 5914 CAACATCCAAAAAGAATCTACCCTACATCTGGTTCCGAGGCTGAGGGGAGG 5964 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || || ||||| ||||| | || || || || Sbjct 5966 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 6025 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| || ||| | |||||||||||| | || || ||||| Sbjct 6026 GACACAATAGAGAATGTAAAAGCAAAGA-TCCAAGACAAGGAAGGCATCCCACCTGACCA 6084 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG---ACTATGAGCGATTA 31368 ||| | || || || ||||| ||||| | || || | | | ||| | | ||||| Sbjct 6085 ACAGAGACTGATCTTTGCTGGTAAACAACTAGAGGA-TGGACGTACACTCTCA--GATTA 6141 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||| || || ||| | ||||| || | |||||| | || || Sbjct 6142 CAACATTCAAAAGGAGTCTACTTTGCATCTTGTCTTAAGACTGCGTGGTGG 6192 >seq1632 Length=265768 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| ||| || ||||||||||||| || ||||||| || ||||| || || || Sbjct 23358 ACCTCATCTGCAGAACTGTACTCTACAATCTCTGTACATAAGTTACTACATTTGATGGTT 23417 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | || |||||| |||| || || | ||| |||||||||||||| || || Sbjct 23418 CCAAGGTTCTGCTGGTTTGACTTTCTGTTACAGGCATCTTTGTAGAGCATGTATGGTGTC 23477 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGC 23227 || || || ||||| | || | || || ||||| ||||| || | || ||||| Sbjct 23478 CCAGTTTCAACCTGAGCTTCTAAAATTGCATACCACAGTGTCTGGGCTTTCACTTGTCGC 23537 Query 23228 ACGTACCTGCCTTCTTCCT 23246 |||||| |||||||| Sbjct 23538 TTGTACCT---TTCTTCCT 23553 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 |||||||| || || || | ||| || || ||| || ||| |||| | ||||| | | Sbjct 18448 ACTTGAAATTCACCTGAGAGGACACGACGGGAGTATATATTGCTTGTGTAAGGTTCAATA 18507 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 || ||||||||||| || ||||| || || ||||| || ||||| || || | |||| Sbjct 18508 GACTCATTGTTTCCAAGAATCTGGGCAGTTGAAGCAGTTGGCATAGGTGCAATGAGTAAG 18567 Query 22580 GAGTTTCTCAAGCCGTG 22596 |||||||||||| || Sbjct 18568 CTGTTTCTCAAGCCATG 18584 >seq3845 Length=110360 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| ||||||||| || ||||| ||||| || || || || || ||||| || || || Sbjct 72219 GGTGGAAAGATTTAGCCAGGAAGTTCAAGTAACAGAAGCTAGGTGTTTTTATGGTTTCCA 72278 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTA 57829 | | ||||||||||| || |||||||||||||| Sbjct 72279 AATTGCCATTGAAAATGTCCATTCAGAAATGTA 72311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444168366460560