Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6658 143 3e-29 seq3845 141 1e-28 seq994 131 2e-25 seq5418 129 7e-25 seq1632 114 2e-20 >seq6658 Length=47451 Score = 143 bits (158), Expect = 3e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 33976 TCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 34035 |||||||||||||||| || ||||| || ||||| || || |||||||| | | |||| | Sbjct 26438 TCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAAAGTGTCTTTCTT 26497 Query 34036 CTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCC 34095 | ||| ||| || |||||||| || |||||||| | ||||||||||| | |||| Sbjct 26498 CAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTTCTTCAGCAGTCC 26557 Query 34096 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAA 34155 | || || |||||||| || || ||||||| ||| || || | || | ||||| |||| Sbjct 26558 AGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACTCAATTGGTAAAA 26617 Query 34156 TAACAAATC 34164 | ||||||| Sbjct 26618 TTACAAATC 26626 Score = 116 bits (128), Expect = 5e-21 Identities = 161/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||||||| || || | || ||||| | || | ||| | Sbjct 24834 CCTCATCTCTGCTTATCAGTTCGTTACTGAAAGTCAAGCCAGGCATCATTCCCCTCTTCT 24893 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || || || || || || || ||||||||||| |||||||| ||||| |||| Sbjct 24894 TTAACCAGAAGATAGAGGCAAAGGAACCCGAAAAGAAGATCCCTTCTACAGCAGCGAAGG 24953 Query 33724 CAATAAGTCTCTCTCCATAACCGGC-GC--TGTCATGTATCCACTTTTGAGCCCAATCGG 33780 | | ||||| ||| | | ||| || ||| || ||||| || | |||||||| | Sbjct 24954 CTACAAGTCGCTCAGGAAATGGGGCAGCATTGTTATCAATCCAGTTCAGGGCCCAATCAG 25013 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 ||||||| || ||||| || | ||||| || ||||| ||||| Sbjct 25014 CCTTCTTCTTAACACAGGGTAAGGTTTCAATAGCATTGAAGAG 25056 Score = 109 bits (120), Expect = 7e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || || ||||||||||| ||||| ||||| |||||||| ||||| ||||| || | || Sbjct 25523 TCCTTCACATAAGTATCTATCAAGAGACTGTACATTTCAGAATGTATGTTCTCCACTGCA 25582 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 |||||||| | ||||||||| | ||| ||||||||||| || || ||| |||||| || Sbjct 25583 ATCTGAAAGCTGTAGAAACAACGAGCTTCGGTAATCTGGACCTCCTGACAGAATCGTGCT 25642 >seq3845 Length=110360 Score = 141 bits (156), Expect = 1e-28 Identities = 169/227 (74%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | ||| ||| || || | || ||||| || || | ||| | Sbjct 72985 CCTCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCT 72926 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 ||||||| ||||| || || ||||| || |||||||| || || || || |||||||||| Sbjct 72925 TAAGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGG 72866 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGT--CATG---TATCCACTTTTGAGCCCAATC 33778 | | || || ||| ||| || | ||||| ||| |||||| || |||||||||| Sbjct 72865 CTACAACTCGCTCACCAAAA--GTAGCTGTAGGATGACCTATCCAGTTGAGAGCCCAATC 72808 Query 33779 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 || ||||| || |||||||||| ||||| || ||||| || |||| Sbjct 72807 TGCTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGAT 72761 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 ||||||||| || || |||||||| || ||||| || |||| | || ||||| | Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976 Query 34028 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 34087 || ||| ||| | ||| || | ||| | | | ||||| || | ||| |||||||| Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTC 70916 Query 34088 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 34147 || ||||| ||||| |||||||| || |||||||| | ||||||||| | |||| || Sbjct 70915 TACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAAT 70856 Query 34148 TGGGAAAATAACAAATCT 34165 || |||||||||||||| Sbjct 70855 GGGAAAAATAACAAATCT 70838 >seq994 Length=361151 Score = 131 bits (144), Expect = 2e-25 Identities = 661/1031 (64%), Gaps = 52/1031 (5%) Strand=Plus/Minus Query 155269 CCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTTTAAAAAATTTCCATCAGGA 155328 ||||||||||| ||| | || |||||| | | || || || ||||||||| ||| Sbjct 159150 CCCATGTTAGCTGAACCTTGCAGTTCTGTGGAATATGCCTTCAAGAAATTTCCAAGTGGA 159091 Query 155329 ATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTCATaaaaaaaaTAACGAG 155388 |||| ||| ||| | || || ||||||||||| ||||| || || ||| | || | Sbjct 159090 ATGTATGCTGAAATAAAGTATGATGGTGAAAGGGTACAGGTCCACAAACATGGAGACAAA 159031 Query 155389 TTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAAGTGGATTATCTCAAA 155448 ||| | |||||| ||| | ||||| || | |||| ||| | |||| ||| Sbjct 159030 TTTAATTATTTTAGTCGAAGTTTAAAACCCGTGATGCCTCACAAAATTTCACATCTGAAA 158971 Query 155449 GAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTGGATTCTGAAATTGTT 155508 ||||||||||| ||||| ||| |||||| | | || | ||| |||| | | Sbjct 158970 GAATACATACCTAAAGCTTTTCCTCAAGCTAGTGATTTGATACTTGATAGTGAAGTACTA 158911 Query 155509 CTTGTAGACGAACATAATGTA---CCGCTACCGTTTGGAAGTTTAGGTATACACAAAAAG 155565 ||||||||| || | || || || || ||||||| ||||| | || ||||| Sbjct 158910 CTTGTAGACACTCAAACTGGGAAGCCACTTCCATTTGGAACATTAGGAGTTCATAAAAAA 158851 Query 155566 AAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTGTTTATACTTTGATGGA 155625 | | || | | | |||||||||| || |||||||| | ||| | ||||| Sbjct 158850 GCTGCTTTCAAGGATGCAAGTGTGTGTTTGTTTGTCTTTGACTGCATTCACTATAATGGA 158791 Query 155626 TTCGATATGACAGACATTCCATTGTATGA---ACG-AAGATCTTTTCTCA-AAGATGTTA 155680 || | | || ||| || | ||| ||| || || | ||||| || ||| | Sbjct 158790 GAAAATCTAATGGAGCGTCCTTTATCTGAGAGACGCAACATTCTGTCTCAGAACATG--A 158733 Query 155681 TGGTCGAAATACCCAATAGAATAGTATTCTCAGAGTTGACGAATAT--TAGTAACG--AG 155736 ||| | || ||| || | || ||||| ||| | | | ||| || || Sbjct 158732 TGG---AGATTAAAAATCACATCATGTTTTCAGAAATGAAGCTTGTGATAGAAAAAGAAG 158676 Query 155737 T-CTCAGTTAACTGATGTATTAGATGATGCACTAACGAGAAAATTAGAAGGATTGGTCTT 155795 | || | || |||| | | || || ||| || |||||||| | || | Sbjct 158675 TACTAAAAAAAATGATTCAATC--TGC--CATTAATCAGGGT-TTAGAAGGGCTAGTTCT 158621 Query 155796 AAAAGATATTAATGGCGTATACGAACCGGGAAAGAGAAGATGGTTAAAAATAAAGCGAGA 155855 |||| | || | || || || ||||| || ||| ||||||| || ||| Sbjct 158620 GAAAGGCACAAACAACACGTATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGA 158561 Query 155856 CTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCCTACTA 155915 || | | || || | ||||||||||| || ||| | || || || || || || | Sbjct 158560 TTACCTAGAAGATGGAGCAATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTT 158501 Query 155916 TGGTAAAGGAGGAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGTTGTTACGACGATGA 155975 ||| | ||| || ||||| || ||| || | ||||| ||||| |||||||| || Sbjct 158500 TGGAACTGGAAATAAAGGTGGAATGATGTCAATATTTCTGATGGGATGTTACGATCCTG- 158442 Query 155976 ATCCGGTAAA---TGGAAGACGGTAACTAAA-TG--TTCCGGTCACGATGATAATACGTT 156029 | ||||| ||| || || || ||| || | || || |||||| ||| Sbjct 158441 --CTAGTAAAAAATGGTGTACTGTTACAAAAGTGCATGGAGGACATGATGATGCTAC--- 158387 Query 156030 AAGGGTTTTGCAAGAC--CAA--TTAACG----ATGGTTAAAATTAACAAGGATCCCaaa 156081 ||||| || || ||| | | | ||| ||||||| ||||| || | Sbjct 158386 -----TTTTGAAAAACTCCAAACTGAGCTGGACATGAAAAAAATTAGGAAGGACCCAAGT 158332 Query 156082 aaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTAT-ATTCCCGATTTTGTAGTAGATGA 156140 ||| |||| | ||| || ||| ||||||| || | ||||| |||||||| | |||| Sbjct 158331 AAAGTTCCTGCTTGGCTGAAAGTGAATAAAA-CTCTCATTCCTGATTTTGTTGCTAATGA 158273 Query 156141 TCCGAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTC-CAAGTCAC 156199 ||| ||| | || | ||||||||||| |||||||| |||||| | || || | Sbjct 158272 TCCTAAAAACTCCCCAGTATGGGAAATTGTTGGAGCAGAATTTACAAAAGCAGAAATC-C 158214 Query 156200 ATACAGCGAATGGAATATCAATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAA 156259 ||||||| |||||||| || ||| | ||||| ||| || | | || |||| || |||| Sbjct 158213 ATACAGCCAATGGAATCTCTATTCGTTTTCCAAGAGTTGCAAAAATCCGAGATGACAAAA 158154 Query 156260 CGTGGAAAGAA 156270 | ||||||||| Sbjct 158153 CATGGAAAGAA 158143 >seq5418 Length=65370 Score = 129 bits (142), Expect = 7e-25 Identities = 165/225 (73%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | || ||| ||| ||||| || ||||| ||||||||||||| Sbjct 8159 CCTCATCTCTGCTGATCAGCTCATTACTAAAAGTGAGACCAGGCATCAGGCCACGCTTTT 8100 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || ||||| || || || || || || ||||||||||| |||||||| | Sbjct 8099 TTAGCCAGAAAATTGAAGCAAAAGACCCAGAGAAAAATATTCCTTCTACAGCAGCAAAAG 8040 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGT--CATG---TATCCACTTTTGAGCCCAATC 33778 | | || || ||| || || | ||||| ||| ||||| | ||||||| || Sbjct 8039 CCACAACTCGCTCACC--AAATGTTGCTGTAGGATGGCTAATCCAAGTGAGAGCCCAGTC 7982 Query 33779 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 || ||||| |||||||| |||| || || || ||||| || || Sbjct 7981 TGCTTTCTTCTTTACACATGGCAAGGTCTCAATTGCATTGAAAAG 7937 Score = 125 bits (138), Expect = 9e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| ||||| |||||||| || ||||| || ||||| ||||| ||||| | | Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 34088 |||| || | ||| | | ||| |||| | ||| || |||| || |||||||| Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800 Query 34089 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATT 34148 ||||||||||||| ||||||||| | || ||||| | ||||||||| | |||| || Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740 Query 34149 GGGAAAATAACAAATCT 34165 || || || ||||| || Sbjct 6739 GGAAACATTACAAACCT 6723 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33832 TTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 ||||||| ||| || | || || || || || | |||||||||||| || |||| | Sbjct 7532 TTTCATTTGGATCCTTGATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACAT 7473 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 |||||||||| || || || || || ||||| ||||| ||||| | ||||||||| Sbjct 7472 TTTCAATGGCAATTTGGAAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTC 7418 Score = 86.0 bits (94), Expect = 8e-12 Identities = 111/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTT 33291 ||||||| ||| | || | || ||| | || ||||| || || ||| ||||| | Sbjct 9216 TTTAAAAATCAGCGTCAAGAGTAAACTTATGCTCTTCCCGTTTAGCCATGACTCCACACT 9157 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 | || ||||||||||| ||||| || || || || || |||||||| || |||| || Sbjct 9156 TCTGATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGTT 9097 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAA 33384 |||| |||||||| ||||| ||||||||| Sbjct 9096 CCATAAAATCAAATGGATTTTCTCCATTGTAAA 9064 >seq1632 Length=265768 Score = 114 bits (126), Expect = 2e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 ||||| |||||||| || |||||||| || || ||| || ||||||| || || ||| Sbjct 21155 TATGTTTCATATGGCCCCAACTTCTCAGATAATTCACAGCTTGCCTCTACAGCTCCATAA 21214 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 ||||| || ||||| |||| | ||||| ||| ||||| || |||||||||||| Sbjct 21215 TAAATAGTCTCAAAAATCTGAATGTTTAGTAGTTGGGCTTCTTTACTGTCAAATGGATAA 21274 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | ||||| || || || |||| || ||||||||||| || || |||| |||| | Sbjct 21275 CGCATAAGAATGAAGGCATCTGCTAGCCCCTGAACACCAATGCCAATTGGTCGATGTTTT 21334 Query 62808 TTATTAGA 62815 || || || Sbjct 21335 TTGTTTGA 21342 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 |||||| ||||| || || | || | || | ||| ||||| || || || ||||| | Sbjct 18447 TACTTGAAATTCACCTGAGAGGACACGACGGGAGTATATATTGCTTGTGTAAGGTTCAAT 18506 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 |||||||| ||||| | ||| || |||||||| ||||| ||||||||||| | | ||| Sbjct 18507 AGACTCATTGTTTCCAAGAATCTGGGCAGTTGAAGCAGTTGGCATAGGTGCAATGAGTAA 18566 Query 62507 ACTATTTCT 62515 || ||||| Sbjct 18567 GCTGTTTCT 18575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627559759013040