Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq994 158 1e-33 seq3845 138 1e-27 seq5418 84.2 2e-11 seq1632 84.2 2e-11 >seq994 Length=361151 Score = 158 bits (174), Expect = 1e-33 Identities = 331/485 (68%), Gaps = 15/485 (3%) Strand=Plus/Minus Query 120268 TATAAACCAGGAAATAAAGGTTGGTTGAAAATAAAGAAGGATTATATACTAAATGGATCT 120327 ||| | |||||||| | |||| | ||||| || || ||||| || | ||||| | Sbjct 158601 TATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGATTACCTAGAAGATGGAGCA 158542 Query 120328 ATAGCGGATTCCGTTGATTTAGTTGTGTTAGGATCATACTATGGAAAAGGGTCAAGGGGC 120387 || || ||||| | |||| | ||||| | ||| |||| | ||||| || | || Sbjct 158541 ATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTTTGGAACTGGAAATAAAGGT 158482 Query 120388 GGCATTCAATCAATATTCTTAATGGGATGTTACGATCCCAACGATTGTAAA---TGGAAA 120444 || || |||||||| | ||||||||||||||||| | | ||||| ||| Sbjct 158481 GGAATGATGTCAATATTTCTGATGGGATGTTACGATCCT---GCTAGTAAAAAATGGTGT 158425 Query 120445 ACGGTTACAAAA-TG--TTCAGGTCATGATGAAGAAACTCTAAAACAAATACAAGAGGAA 120501 || ||||||||| || | ||| |||||||| | ||| | || || | ||| || Sbjct 158424 ACTGTTACAAAAGTGCATGGAGGACATGATGATGCTACTTTTGAAAAACTCCAAACTGAG 158365 Query 120502 CTAGATGTTATTAAAATCAGTAAGGATGCATCGAAAATACCTAAGTGGTTAACTATAAAT 120561 || || | | ||||| || ||||| || ||| | ||| ||| | | | ||| Sbjct 158364 CTGGACATGAAAAAAATTAGGAAGGACCCAAGTAAAGTTCCTGCTTGGCTGAAAGTGAAT 158305 Query 120562 AAAGCATATTAT-CCTGATTTTATTGTTAAAGATCCTAGATCTTCCCCGGTATGGGAAAT 120620 ||| | | | || ||||||||| ||| ||| ||||||| | ||||| ||||||||||| Sbjct 158304 AAAAC-TCTCATTCCTGATTTTGTTGCTAATGATCCTAAAAACTCCCCAGTATGGGAAAT 158246 Query 120621 TACGGGATCTGGTTTTACATCTTC--AAGTCAACATACAGCAAATGGAATATCTATACGT 120678 | ||| | | |||||| | || || |||||||| |||||||| ||||| ||| Sbjct 158245 TGTTGGAGCAGAATTTACAAAAGCAGAAATC--CATACAGCCAATGGAATCTCTATTCGT 158188 Query 120679 TTTCCTAGATTTGCAAGAATAAGAAATGATAAAAATTGGATATCTGCAACAAATCTACAA 120738 ||||| ||| |||||| ||| || |||| |||| |||| | || ||||| |||| Sbjct 158187 TTTCCAAGAGTTGCAAAAATCCGAGATGACAAAACATGGAAAGAAGCCACAAACTTACAG 158128 Query 120739 GAGTT 120743 || || Sbjct 158127 GAATT 158123 >seq3845 Length=110360 Score = 138 bits (152), Expect = 1e-27 Identities = 170/229 (74%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || ||||||||| ||||| || || ||||||| |||| || || Sbjct 72983 TCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCTTA 72924 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | |||||||| |||||||||||||| ||||||||||| ||||| ||| Sbjct 72923 AGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGGCT 72864 Query 11774 ACTACTCTTTCTCCATA--TACCTTGTTGCTAGA--TATCCATTTTCTGGCCCAATCAGC 11829 || |||| || ||| | || | ||| | || |||||| || |||||||| || Sbjct 72863 ACAACTCGCTCACCAAAAGTAGC-TGTAGGATGACCTATCCAGTTGAGAGCCCAATCTGC 72805 Query 11830 TTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATT 11878 |||||| || || || || ||||| || || || || | ||||||| Sbjct 72804 TTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGATGCATT 72756 >seq5418 Length=65370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || || ||||| || | |||| || || | ||| || || |||||||| || || | Sbjct 8854 ACCTTATCACAGCCAAGCTCTAGTAGTAGACGATCAGCAACAAATTCTATGTATTGTTTC 8795 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || || |||||||||||| || | | |||| || | |||| | || ||||| || | | Sbjct 8794 ATCAATTGACAATTCATACCAATCAAAGCCACTGGTAAAGCATCAGTTAAAAATTCTTGT 8735 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || || || || || | || ||| | || ||||| |||||| || | Sbjct 8734 TCAATTTTCACAGCTTCTTTAATAATCTCCACTACTCTCTCCTTGGATGGTTTATTGACA 8675 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | ||| |||||| || || ||||||||||| |||| ||| Sbjct 8674 AGATGACTAAACAGCAAGCAGGCAAAATCACAGTGTAGACC 8634 >seq1632 Length=265768 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 37378 TATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAA 37437 ||||| ||||| || || | | | || || ||| || || | |||| || ||||| Sbjct 21155 TATGTTTCATATGGCCCCAACTTCTCAGATAATTCACAGCTTGCCTCTACAGCTCCATAA 21214 Query 37438 TATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAG 37497 || || || || ||||| || || |||| || || ||||||| || || |||| ||| Sbjct 21215 TAAATAGTCTCAAAAATCTGAATGTTTAGTAGTTGGGCTTCTTTACTGTCAAATGGATAA 21274 Query 37498 CCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTC 37557 | || | || || |||| || | ||||||||||| || || || |||| |||||| Sbjct 21275 CGCATAAGAATGAAGGCATCTGCTAGCCCCTGAACACCAATGCCAATTGGTCGATGTTTT 21334 Query 37558 TTATTAGAT 37566 || || ||| Sbjct 21335 TTGTTTGAT 21343 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 37171 TATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGAT 37230 ||||||||||| || || |||||||| |||||||| || | | || || | || || Sbjct 18481 TATATATTGCTTGTGTAAGGTTCAATAGACTCATTGTTTCCAAGAATCTGGGCAGTTGAA 18540 Query 37231 GCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTA 37278 ||||| ||||| ||||| || || | ||| |||||||| |||||| || Sbjct 18541 GCAGTTGGCATAGGTGCAATGAGTAAGCTGTTTCTCAAGCCATGTCTA 18588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466845179587920