Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6658 140 4e-28 seq3845 134 2e-26 seq994 131 2e-25 seq5418 125 9e-24 seq1632 114 2e-20 >seq6658 Length=47451 Score = 140 bits (154), Expect = 4e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 36552 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 36611 |||||||||| ||||| || ||||| || ||||| || || |||||||| | | |||| | Sbjct 26438 TCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAAAGTGTCTTTCTT 26497 Query 36612 TTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCC 36671 ||| ||| || |||||||| || |||||||| | ||||||||||| | |||| Sbjct 26498 CAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTTCTTCAGCAGTCC 26557 Query 36672 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAA 36731 | || || |||||||| || || ||||||| ||| || || | || | |||||| |||| Sbjct 26558 AGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACTCAATTGGTAAAA 26617 Query 36732 TAACAAATCTATTTTGATTTTTTGCAAGGATTGGTTC 36768 | ||||||| | | ||||||| || | | |||| Sbjct 26618 TTACAAATCGTCCTGGGTTTTTTGTCAGAAGTAGTTC 26654 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 || || ||||| ||||| ||||| ||||| |||||||| ||||| ||||| || | || Sbjct 25523 TCCTTCACATAAGTATCTATCAAGAGACTGTACATTTCAGAATGTATGTTCTCCACTGCA 25582 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 36538 || ||||| | ||||||||| | ||| ||||||||||| || || ||| |||||| || Sbjct 25583 ATCTGAAAGCTGTAGAAACAACGAGCTTCGGTAATCTGGACCTCCTGACAGAATCGTGCT 25642 >seq3845 Length=110360 Score = 134 bits (148), Expect = 2e-26 Identities = 165/225 (73%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || || || | || ||||| || || | ||| | Sbjct 72985 CCTCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCT 72926 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 ||||||| ||||| || |||||||| ||||||||||| || || || || || ||||||| Sbjct 72925 TAAGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGG 72866 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 36356 | | || || ||| ||| || || | ||| |||||| || |||||||||| | Sbjct 72865 CTACAACTCGCTCACCAAAAGTAGCTGTAGGATGACCTATCCAGTTGAGAGCCCAATCTG 72806 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 36401 | ||||| || |||||||||| || || || ||||| || |||| Sbjct 72805 CTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGAT 72761 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 36544 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 36603 ||||||||| || || || ||||| || ||||| || |||| | || ||||| | Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976 Query 36604 TTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 36663 || ||| | | | ||| || | ||| | | | ||||| || | ||| |||||||| Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTC 70916 Query 36664 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 36723 || ||||| ||||| |||||||| || |||||||| | ||||||||| | |||| ||| Sbjct 70915 TACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAAT 70856 Query 36724 TGGAAAAATAACAAATCT 36741 ||||||||||||||||| Sbjct 70855 GGGAAAAATAACAAATCT 70838 >seq994 Length=361151 Score = 131 bits (144), Expect = 2e-25 Identities = 661/1031 (64%), Gaps = 52/1031 (5%) Strand=Plus/Minus Query 158460 CCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATTTAAAAAATTTCCATCAGGA 158519 ||||||||||| ||| | || |||||| | | || || || ||||||||| ||| Sbjct 159150 CCCATGTTAGCTGAACCTTGCAGTTCTGTGGAATATGCCTTCAAGAAATTTCCAAGTGGA 159091 Query 158520 ATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGTTCATAAAAATAATAACGAG 158579 |||| ||||||| | || || ||||| || || ||||| || || ||| || || | Sbjct 159090 ATGTATGCTGAAATAAAGTATGATGGTGAAAGGGTACAGGTCCACAAACATGGAGACAAA 159031 Query 158580 TTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAAGTGGATTATCTCAAA 158639 ||| | |||||| ||| | ||||| || | |||| ||| | |||| ||| Sbjct 159030 TTTAATTATTTTAGTCGAAGTTTAAAACCCGTGATGCCTCACAAAATTTCACATCTGAAA 158971 Query 158640 GAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTGGATTCTGAAATTGTT 158699 ||||||||||| ||||| ||| |||||| | | || | ||| |||| | | Sbjct 158970 GAATACATACCTAAAGCTTTTCCTCAAGCTAGTGATTTGATACTTGATAGTGAAGTACTA 158911 Query 158700 CTTGTAGACGAACATAATGTA---CCGCTCCCGTTTGGAAGTTTAGGTATACACAAAAAG 158756 ||||||||| || | || || || || ||||||| ||||| | || ||||| Sbjct 158910 CTTGTAGACACTCAAACTGGGAAGCCACTTCCATTTGGAACATTAGGAGTTCATAAAAAA 158851 Query 158757 AAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTGTTTGTACTTTGATGGA 158816 | | || | | | |||||||||| || |||||||| | ||| | ||||| Sbjct 158850 GCTGCTTTCAAGGATGCAAGTGTGTGTTTGTTTGTCTTTGACTGCATTCACTATAATGGA 158791 Query 158817 TTCGATATGACGGACATTCCATTGTACGA---ACG-AAGATCTTTTCTCA-AAGATGTTA 158871 || | | ||| ||| || | || ||| || || | ||||| || ||| | Sbjct 158790 GAAAATCTAATGGAGCGTCCTTTATCTGAGAGACGCAACATTCTGTCTCAGAACATG--A 158733 Query 158872 TGGTCGAAATACCCAATAGAATAGTATTCTCAGAGTTGACGAATAT--TAGTAACG--AG 158927 ||| | || ||| || | || ||||| ||| | | | ||| || || Sbjct 158732 TGG---AGATTAAAAATCACATCATGTTTTCAGAAATGAAGCTTGTGATAGAAAAAGAAG 158676 Query 158928 T-CTCAGTTAATTGATGTATTGGATGATGCACTAACGAGAAAATTAGAAGGATTGGTCTT 158986 | || | || |||| | | || || ||| || |||||||| | || | Sbjct 158675 TACTAAAAAAAATGATTCAATC--TGC--CATTAATCAGGGT-TTAGAAGGGCTAGTTCT 158621 Query 158987 AAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTAAAAATAAAGCGAGA 159046 |||| | || || || || ||||| || ||| ||||||| || ||| Sbjct 158620 GAAAGGCACAAACAACACGTATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGA 158561 Query 159047 CTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCTTACTA 159106 || | | || || | ||||||||||| || ||| | || || || || || || | Sbjct 158560 TTACCTAGAAGATGGAGCAATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTT 158501 Query 159107 TGGTAAAGGATCAAAGGGTGGTATTATGGCAGTCTTTTTAATGGGTTGTTACGATGATGA 159166 ||| | ||| || ||||| || ||| || | ||| | ||||| ||||||||| || Sbjct 158500 TGGAACTGGAAATAAAGGTGGAATGATGTCAATATTTCTGATGGGATGTTACGATCCTG- 158442 Query 159167 ATCCGGTAAA---TGGAAGACGGTAACTAAA-TG--TTCAGGACACGATGATAATACGTT 159220 | ||||| ||| || || || ||| || | |||||| |||||| ||| Sbjct 158441 --CTAGTAAAAAATGGTGTACTGTTACAAAAGTGCATGGAGGACATGATGATGCTAC--- 158387 Query 159221 AAGGGTTTTGCAAGACC---AATTAA--TG---ATGGTTAAAATTAACAAGGATCCCaaa 159272 ||||| || || || | | || ||| ||||||| ||||| || | Sbjct 158386 -----TTTTGAAAAACTCCAAACTGAGCTGGACATGAAAAAAATTAGGAAGGACCCAAGT 158332 Query 159273 aaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTAT-ATTCCCGATTTTGTAGTAGAGGA 159331 ||| |||| | ||| || ||| ||||||| || | ||||| |||||||| | | || Sbjct 158331 AAAGTTCCTGCTTGGCTGAAAGTGAATAAAA-CTCTCATTCCTGATTTTGTTGCTAATGA 158273 Query 159332 TCCGAAACAATCTCAAATATGGGAAATTTCAGGAACAGAGTTTACATCTTC-CAAGTCAC 159390 ||| ||| | || | | ||||||||||| ||| |||| |||||| | || || | Sbjct 158272 TCCTAAAAACTCCCCAGTATGGGAAATTGTTGGAGCAGAATTTACAAAAGCAGAAATC-C 158214 Query 159391 ATACAGCAAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAA 159450 ||||||| |||||||| || ||| | ||||| ||| || | | || |||| || |||| Sbjct 158213 ATACAGCCAATGGAATCTCTATTCGTTTTCCAAGAGTTGCAAAAATCCGAGATGACAAAA 158154 Query 159451 CGTGGAAAGAA 159461 | ||||||||| Sbjct 158153 CATGGAAAGAA 158143 >seq5418 Length=65370 Score = 125 bits (138), Expect = 9e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 36545 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 36604 |||||||| ||||| || ||||| || ||||| || ||||| ||||| ||||| | | Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860 Query 36605 TTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 36664 |||| | | ||| | | ||| |||| | ||| || |||| || |||||||| Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800 Query 36665 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATT 36724 ||||||||||||| ||||||||| | || ||||| | ||||||||| | |||| ||| Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740 Query 36725 GGAAAAATAACAAATCT 36741 ||||| || ||||| || Sbjct 6739 GGAAACATTACAAACCT 6723 Score = 125 bits (138), Expect = 9e-24 Identities = 162/223 (73%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | || || ||| ||||| || ||||| ||||||||||||| Sbjct 8159 CCTCATCTCTGCTGATCAGCTCATTACTAAAAGTGAGACCAGGCATCAGGCCACGCTTTT 8100 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || || ||||| || ||||| || || ||||||||||| || ||||| | Sbjct 8099 TTAGCCAGAAAATTGAAGCAAAAGACCCAGAGAAAAATATTCCTTCTACAGCAGCAAAAG 8040 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 36356 | | || || ||| ||| | || | ||| ||||| | ||||||| || | Sbjct 8039 CCACAACTCGCTCACCAAATGTTGCTGTAGGATGGCTAATCCAAGTGAGAGCCCAGTCTG 7980 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 | ||||| |||||||| |||| ||||| || ||||| || || Sbjct 7979 CTTTCTTCTTTACACATGGCAAGGTCTCAATTGCATTGAAAAG 7937 Score = 93.3 bits (102), Expect = 6e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35992 ATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 36051 ||| || ||||||||||| ||| |||||||| || ||||||||| || || | || Sbjct 8822 ATCAGCAACAAATTCTATGTATTGTTTCATCAATTGACAATTCATACCAATCAAAGCCAC 8763 Query 36052 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATAT 36111 ||| | ||| |||| | ||||||||||||||| || || ||| | ||||| | Sbjct 8762 TGGTAAAGCATCAGTTAAAAATTCTTGTTCAATTTTCACAGCTTCTTTAATAATCTCCAC 8703 Query 36112 TACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCA 36171 |||| | || | ||| || | | ||| |||||| ||| || || ||||| || Sbjct 8702 TACTCTCTCCTTGGATGGTTTATTGACAAGATGACTAAACAGCAAGCAGGCAAAATCACA 8643 Query 36172 GTGTAGACCCT 36182 ||||||||||| Sbjct 8642 GTGTAGACCCT 8632 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 36408 TTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467 ||||||| ||| || | || || ||||| || | |||||||||||| || |||| | Sbjct 7532 TTTCATTTGGATCCTTGATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACAT 7473 Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 |||||||||| ||||| || || || ||||| ||||| ||||| | ||| ||||| Sbjct 7472 TTTCAATGGCAATTTGGAAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTC 7418 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTT 35867 ||||||||||| | || |||| ||| | || ||||| || || ||| ||||| | Sbjct 9216 TTTAAAAATCAGCGTCAAGAGTAAACTTATGCTCTTCCCGTTTAGCCATGACTCCACACT 9157 Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927 | || ||||||||||| ||||| || || || || || ||||| || || |||| || Sbjct 9156 TCTGATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGTT 9097 Query 35928 CCATGAAATCGAATGGATT 35946 |||| ||||| |||||||| Sbjct 9096 CCATAAAATCAAATGGATT 9078 >seq1632 Length=265768 Score = 114 bits (126), Expect = 2e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 ||||| || ||||| || |||||||| || |||||| || ||||||| || || ||| Sbjct 21155 TATGTTTCATATGGCCCCAACTTCTCAGATAATTCACAGCTTGCCTCTACAGCTCCATAA 21214 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 ||||| || || || |||| | ||||| ||| ||||| || |||||||||||| Sbjct 21215 TAAATAGTCTCAAAAATCTGAATGTTTAGTAGTTGGGCTTCTTTACTGTCAAATGGATAA 21274 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | ||||| || || ||||||| || ||||||||||| || || |||| |||| | Sbjct 21275 CGCATAAGAATGAAGGCATCTGCTAGCCCCTGAACACCAATGCCAATTGGTCGATGTTTT 21334 Query 65601 TTATTAGA 65608 || || || Sbjct 21335 TTGTTTGA 21342 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 65173 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 65232 ||||| |||||||||||| || || | || | || | ||| ||||| || || || | Sbjct 18440 GATTACTTACTTGAAATTCACCTGAGAGGACACGACGGGAGTATATATTGCTTGTGTAAG 18499 Query 65233 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 |||| | ||||||||| ||||| | ||| || |||||||| ||||| ||||||||||| | Sbjct 18500 GTTCAATAGACTCATTGTTTCCAAGAATCTGGGCAGTTGAAGCAGTTGGCATAGGTGCAA 18559 Query 65293 CCAATAAACTATTTCT 65308 | ||| || ||||| Sbjct 18560 TGAGTAAGCTGTTTCT 18575 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || |||||||| || || ||||| |||| | || || ||||| || |||| Sbjct 17145 TCCACCCATAGAAATGCATGCTGGTCAGTTTTCCATAATTGGGGTCAGCTATGTGAATAT 17204 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| ||||| ||||| || || ||||| | ||| || |||| || ||||| | Sbjct 17205 TCAGAGACTGACTCTGATCAATAAATGCTCCTCGGTCAGCTCCCATCTTGATGATAAGCC 17264 Query 65026 TTTGTGGAATTTCCCAAATAGTT 65048 ||| ||||||||||| | |||| Sbjct 17265 GTTGGGGAATTTCCCACACAGTT 17287 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 ||||| || || | |||||||| ||||||||||| | || || || || |||| || Sbjct 23385 ATCTCTGTACATAAGTTACTACATTTGATGGTTCCAAGGTTCTGCTGGTTTGACTTTCTG 23444 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 65909 ||||| ||||| || || || ||| |||| || |||||||||| ||||| ||||| ||| Sbjct 23445 TTACAGGCATCTTTGTAGAGCATGTATGGTGTCCCAGTTTCAACCTGAGCTTCTAAAATT 23504 Query 65910 GCTTTCCA 65917 || | ||| Sbjct 23505 GCATACCA 23512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655813308102120