Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4435 111 2e-19 seq629 98.7 1e-15 seq1267 93.3 4e-14 seq5467 84.2 2e-11 >seq4435 Length=89394 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||||| ||||||||||| || ||||||||||| || || ||| ||||| Sbjct 36481 ACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGACAGAGTTCTCCCATCTTCT 36422 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | |||||| || ||| |||| | | || || || || || || |||||||| || | Sbjct 36421 AACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTGGAATTCCTTCTTTATCCTGG 36362 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 |||||| ||| | | ||| | ||||| |||| || || || | ||| | |||||| Sbjct 36361 ATTTTTGCTTTCACATTTTCAATAGTGTCACTGGGTTCAACTTCGAGGGTTATAGTCTTG 36302 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| ||||| || ||||| Sbjct 36301 CCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 >seq629 Length=499154 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 |||||||| ||||||||||| ||||| | ||| | || | || || || |||||||| Sbjct 6162 GTAGACTCCTTTTGAATGTTGTAATCTGAGAGTGTACGTCCA-TCCTCTAGTTGTTTACC 6104 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| ||||||| | || || || || || |||||||| ||||| ||| ||| ||| Sbjct 6103 AGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTTT 6044 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | |||||| | |||||||| || | || | || || || || | || Sbjct 6043 TACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGT 5984 Query 139747 TTTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 5983 CTTCACAAAAATTTGCAT 5966 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCTTCGAGCTGTTTAC 139625 ||||| |||||||| ||||| || || | ||| |||| || || || ||||||| Sbjct 5934 GTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGT--TCGACCATCCTCCAGTTGTTTAC 5877 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685 ||||| ||||||| | || || || || || |||||||| ||||| ||| ||| || Sbjct 5876 CAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTT 5817 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 ||| | || | |||||| | |||||||| || | || | || || || || | | Sbjct 5816 TTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGG 5757 Query 139746 TTTTTACGAATATTTGCAT 139764 | || || || |||||||| Sbjct 5756 TCTTCACAAAAATTTGCAT 5738 >seq1267 Length=316221 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||||| || |||||||||||||| || ||||| | || || ||||| Sbjct 206221 ACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCATCTTCC 206280 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||| || || ||| | |||| | ||||| || ||||| || ||||||||||| | Sbjct 206281 AACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGG 206340 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | ||| | |||||| |||| || || || | ||| | || ||| Sbjct 206341 ATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTAATGGTTTTG 206400 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| || || || ||||| Sbjct 206401 CCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| |||| |||| ||||| ||||||||||||||||| || || ||||| || Sbjct 206445 CAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGACCATC 206504 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || | |||||| |||||| | || | | || || || || || || ||||||||||| Sbjct 206505 CTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTC 206564 Query 139672 GGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| |||| | || | | ||| | ||||| | |||||||| || | || | | Sbjct 206565 -TTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGTGATAG 206623 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || || | ||||||||| || || ||||| Sbjct 206624 TTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 >seq5467 Length=66102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 ||||| ||||| ||||| |||||||| | || | || | || || ||||||||||| Sbjct 29623 GTAGATTCTTTCTGAATATTATAATCAGAAAGGGTCCGTCCA-TCCTCCAGCTGTTTACC 29681 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| | ||||| | || || || || || |||||||||||||| ||| ||| ||| Sbjct 29682 TGCAAAAATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTT 29741 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | |||||| | || |||||||| | || | || || || || | || Sbjct 29742 TACATTCTCAATTGTGTCACTTGGTTCCACCTCCAAAGTGATAGTTTTTCCAGTGAGGGT 29801 Query 139747 TTTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 29802 CTTGACAAAAATCTGCAT 29819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494285653965600