Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3845 156 6e-33 seq5418 141 1e-28 seq994 141 1e-28 seq1632 127 3e-24 seq6658 122 1e-22 >seq3845 Length=110360 Score = 156 bits (172), Expect = 6e-33 Identities = 170/225 (76%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || ||||| || || || | || ||||| || || | ||| | Sbjct 72985 CCTCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCT 72926 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 ||||||| ||||| || |||||||||||||||||||| || || || || || ||||||| Sbjct 72925 TAAGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGG 72866 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 50158 | |||| || ||| ||| || | || | ||| |||||| || |||||||||| | Sbjct 72865 CTACAACTCGCTCACCAAAAGTAGCTGTAGGATGACCTATCCAGTTGAGAGCCCAATCTG 72806 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 | ||||| || |||||||||| ||||| || ||||| || |||| Sbjct 72805 CTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGAT 72761 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 ||||||||| || || || ||||| || ||||| || |||| | || ||||| || Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976 Query 50406 TTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 50465 || ||| | | ||| || | ||| | | | ||||| || | ||| |||||||| Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTC 70916 Query 50466 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 50525 || ||||| ||||| |||||||| || |||||||| | ||||||||| | |||| || Sbjct 70915 TACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAAT 70856 Query 50526 TGGGAAAATAACAAATCT 50543 || |||||||||||||| Sbjct 70855 GGGAAAAATAACAAATCT 70838 >seq5418 Length=65370 Score = 141 bits (156), Expect = 1e-28 Identities = 168/225 (75%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || || || ||| ||||| || ||||| ||||||||||||| Sbjct 8159 CCTCATCTCTGCTGATCAGCTCATTACTAAAAGTGAGACCAGGCATCAGGCCACGCTTTT 8100 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || || ||||| |||||||| || || ||||||||||| || ||||| | Sbjct 8099 TTAGCCAGAAAATTGAAGCAAAAGACCCAGAGAAAAATATTCCTTCTACAGCAGCAAAAG 8040 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGT--CATG---TATCCACTTTTGAGCCCAATC 50156 | |||| || ||| || || || ||||| ||| ||||| | ||||||| || Sbjct 8039 CCACAACTCGCTCACC--AAATGTTGCTGTAGGATGGCTAATCCAAGTGAGAGCCCAGTC 7982 Query 50157 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 || ||||| |||||||| |||| || || || ||||| || || Sbjct 7981 TGCTTTCTTCTTTACACATGGCAAGGTCTCAATTGCATTGAAAAG 7937 Score = 122 bits (134), Expect = 1e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 50347 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGT 50406 |||||||| ||||| || ||||| || ||||| || ||||| ||||| ||||| ||| Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860 Query 50407 TTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCC 50466 |||| | | ||| | | ||| |||| | ||| || |||| || |||||||| Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800 Query 50467 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATT 50526 ||||||||||||| ||||||||| | || ||||| | ||||||||| | |||| || Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740 Query 50527 GGGAAAATAACAAATCT 50543 || || || ||||| || Sbjct 6739 GGAAACATTACAAACCT 6723 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTC---TTGAGACATAACTCCCATTT 49669 ||||||| ||| | || |||| ||| | || ||||| || || ||| ||||| | Sbjct 9216 TTTAAAAATCAGCGTCAAGAGTAAACTTATGCTCTTCCCGTTTAGCCATGACTCCACACT 9157 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || ||||||||||| ||||| || || || || || |||||||| || |||| || Sbjct 9156 TCTGATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGTT 9097 Query 49730 CCATGAAATCAAACGGATT 49748 |||| |||||||| ||||| Sbjct 9096 CCATAAAATCAAATGGATT 9078 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 50210 TTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 ||||||| ||| || | || || || || || | |||||||||||| || |||| | Sbjct 7532 TTTCATTTGGATCCTTGATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACAT 7473 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 |||||||||| || || || || || ||||| ||||| ||||| | ||||||||| Sbjct 7472 TTTCAATGGCAATTTGGAAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTC 7418 >seq994 Length=361151 Score = 141 bits (156), Expect = 1e-28 Identities = 656/1023 (64%), Gaps = 36/1023 (4%) Strand=Plus/Minus Query 173708 CCCATGTTAGCAGAATCATGTGATTCTGTCAATAAGGCGTTTAAAAAATTTCCATCAGGA 173767 ||||||||||| ||| | || |||||| | | || || || ||||||||| ||| Sbjct 159150 CCCATGTTAGCTGAACCTTGCAGTTCTGTGGAATATGCCTTCAAGAAATTTCCAAGTGGA 159091 Query 173768 ATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTCATAAAAATAATAACGAG 173827 |||| ||| ||| | || || ||||||||||| ||||| || || ||| || || | Sbjct 159090 ATGTATGCTGAAATAAAGTATGATGGTGAAAGGGTACAGGTCCACAAACATGGAGACAAA 159031 Query 173828 TTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAAGTGGATTATCTCAAA 173887 ||| | |||||| ||| | ||||| || | |||| ||| | |||| ||| Sbjct 159030 TTTAATTATTTTAGTCGAAGTTTAAAACCCGTGATGCCTCACAAAATTTCACATCTGAAA 158971 Query 173888 GAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCATATTGGATTCTGAAATTGTT 173947 ||||||||||| ||||| ||| |||||| | | ||| | ||| |||| | | Sbjct 158970 GAATACATACCTAAAGCTTTTCCTCAAGCTAGTGATTTGATACTTGATAGTGAAGTACTA 158911 Query 173948 CTTGTAGACGAACATAATGTA---CCGCTACCGTTTGGAAGTTTAGGTATACACAAAAAG 174004 ||||||||| || | || || || || ||||||| ||||| | || ||||| Sbjct 158910 CTTGTAGACACTCAAACTGGGAAGCCACTTCCATTTGGAACATTAGGAGTTCATAAAAAA 158851 Query 174005 AAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTGTTTGTACTTTGATGGA 174064 | | || | | | |||||||||| || |||||||| | ||| | ||||| Sbjct 158850 GCTGCTTTCAAGGATGCAAGTGTGTGTTTGTTTGTCTTTGACTGCATTCACTATAATGGA 158791 Query 174065 TTCGATATGACGGACATTCCATTGTACGA---ACG-AAGATCTTTTCTCA-AAGATGTTA 174119 || | | ||| ||| || | || ||| || || | ||||| || ||| | Sbjct 158790 GAAAATCTAATGGAGCGTCCTTTATCTGAGAGACGCAACATTCTGTCTCAGAACATGATG 158731 Query 174120 TGGTTGAAATACCCAATAGAATAGTATTCTCAGAGTTGACGAATAT--TAGTAACG--AG 174175 | | ||| ||| || | || ||||| ||| | | | ||| || || Sbjct 158730 GAGATTAAA-----AATCACATCATGTTTTCAGAAATGAAGCTTGTGATAGAAAAAGAAG 158676 Query 174176 T-CTCAGTTAACTGACGTATTGGATGATGCACTAACAAGAAAATTAGAAGGATTGGTCTT 174234 | || | || ||| || || || ||| || |||||||| | || | Sbjct 158675 TACTAAAAAAAATGA----TTCAATCTGCCATTAATCAGGGT-TTAGAAGGGCTAGTTCT 158621 Query 174235 AAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTAAAAATAAAGCGAGA 174294 |||| | || || || || ||||| || ||| ||||||| || ||| Sbjct 158620 GAAAGGCACAAACAACACGTATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGA 158561 Query 174295 CTATTTGAACGAGGGTTCTATGGCAGATTCTGCAGATTTAGTAGTACTAGGTGCTTACTA 174354 || | | || || | ||||||||||| || ||| | || || || || || || | Sbjct 158560 TTACCTAGAAGATGGAGCAATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTT 158501 Query 174355 TGGTAAAGGAGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGTTGTTACGACGATGA 174414 ||| | ||| || ||||| || ||| || | ||||| ||||| |||||||| || Sbjct 158500 TGGAACTGGAAATAAAGGTGGAATGATGTCAATATTTCTGATGGGATGTTACGATCCTG- 158442 Query 174415 ATCCGGTAAA---TGGAAGACGGTAACTAAA-TG--TTCCGGACACGATGATAATACGTT 174468 | ||||| ||| || || || ||| || | ||||| |||||| ||| || Sbjct 158441 --CTAGTAAAAAATGGTGTACTGTTACAAAAGTGCATGGAGGACATGATGATGCTACTTT 158384 Query 174469 AAGAGTTTTGCAAGACCAATTAAAGATGATTAAAATTAACAAGGATCCCaaaaaaaTTCC 174528 | | ||| | | | |||| ||||||| ||||| || | ||| |||| Sbjct 158383 TGAAAAACTCCAAACTGAGCTGGACATGAAAAAAATTAGGAAGGACCCAAGTAAAGTTCC 158324 Query 174529 AGAGTGGTTGGTAGTTAATAAAATCTAT-ATTCCCGATTTTGTAGTAGAGGATCCAAAAC 174587 | ||| || ||| ||||||| || | ||||| |||||||| | | ||||| ||| Sbjct 158323 TGCTTGGCTGAAAGTGAATAAAA-CTCTCATTCCTGATTTTGTTGCTAATGATCCTAAAA 158265 Query 174588 AATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTC-CAAGTCACATACAGCG 174646 | || | ||||||||||| |||||||| |||||| | || || |||||||| Sbjct 158264 ACTCCCCAGTATGGGAAATTGTTGGAGCAGAATTTACAAAAGCAGAAATC-CATACAGCC 158206 Query 174647 AATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAACGTGGAAA 174706 |||||||| || ||| | ||||| ||| || | | || |||| || ||||| |||||| Sbjct 158205 AATGGAATCTCTATTCGTTTTCCAAGAGTTGCAAAAATCCGAGATGACAAAACATGGAAA 158146 Query 174707 GAA 174709 ||| Sbjct 158145 GAA 158143 >seq1632 Length=265768 Score = 127 bits (140), Expect = 3e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 79290 TGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAA 79349 ||| ||| |||||||||||| || || ||| || | ||||||||| || ||||||| Sbjct 21145 TGACCCTTGGTATGTTTCATATGGCCCCAACTTCTCAGATAATTCACAGCTTGCCTCTAC 21204 Query 79350 TGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATC 79409 ||||| |||||||| || || ||||||| | || || ||| |||||| || || Sbjct 21205 AGCTCCATAATAAATAGTCTCAAAAATCTGAATGTTTAGTAGTTGGGCTTCTTTACTGTC 21264 Query 79410 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 79469 |||||||||| | ||||| || || ||||||| || ||||||||||| || || || Sbjct 21265 AAATGGATAACGCATAAGAATGAAGGCATCTGCTAGCCCCTGAACACCAATGCCAATTGG 21324 Query 79470 TCTATGTCTCTTATTAGA 79487 || |||| | || || || Sbjct 21325 TCGATGTTTTTTGTTTGA 21342 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||||||||| || || ||||| |||| | || || ||||| || |||| Sbjct 17145 TCCACCCATAGAAATGCATGCTGGTCAGTTTTCCATAATTGGGGTCAGCTATGTGAATAT 17204 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| ||||| ||||| || || ||||| | ||| || |||| || ||||| | Sbjct 17205 TCAGAGACTGACTCTGATCAATAAATGCTCCTCGGTCAGCTCCCATCTTGATGATAAGCC 17264 Query 78905 TTTGTGGAATTTCCCAAATAGTT 78927 ||| ||||||||||| | |||| Sbjct 17265 GTTGGGGAATTTCCCACACAGTT 17287 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 79052 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATG 79111 ||||| |||||||||||| || || | || | || | ||| ||||| || || || | Sbjct 18440 GATTACTTACTTGAAATTCACCTGAGAGGACACGACGGGAGTATATATTGCTTGTGTAAG 18499 Query 79112 GTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171 |||| | || ||||| ||||| | ||| || |||||||| || |||||||||||||| | Sbjct 18500 GTTCAATAGACTCATTGTTTCCAAGAATCTGGGCAGTTGAAGCAGTTGGCATAGGTGCAA 18559 Query 79172 CCAATAAACTATTTCT 79187 | ||| || ||||| Sbjct 18560 TGAGTAAGCTGTTTCT 18575 >seq6658 Length=47451 Score = 122 bits (134), Expect = 1e-22 Identities = 162/223 (73%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || |||||||| || || | || ||||| | || | ||| | Sbjct 24834 CCTCATCTCTGCTTATCAGTTCGTTACTGAAAGTCAAGCCAGGCATCATTCCCCTCTTCT 24893 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || || || ||||| || || ||||||||||| |||||||| || || |||| Sbjct 24894 TTAACCAGAAGATAGAGGCAAAGGAACCCGAAAAGAAGATCCCTTCTACAGCAGCGAAGG 24953 Query 50102 CAACAAGTCTCTCTCCATAACTGGC-GC--TGTCATGTATCCACTTTTGAGCCCAATCGG 50158 | ||||||| ||| | | ||| || ||| || ||||| || | |||||||| | Sbjct 24954 CTACAAGTCGCTCAGGAAATGGGGCAGCATTGTTATCAATCCAGTTCAGGGCCCAATCAG 25013 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 ||||||| || ||||| || | ||||| || ||||| ||||| Sbjct 25014 CCTTCTTCTTAACACAGGGTAAGGTTTCAATAGCATTGAAGAG 25056 Score = 109 bits (120), Expect = 8e-19 Identities = 101/127 (80%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 || || ||||||||||| ||||| ||||| |||||||| ||||| ||||| || | || Sbjct 25523 TCCTTCACATAAGTATCTATCAAGAGACTGTACATTTCAGAATGTATGTTCTCCACTGCA 25582 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC- 50339 |||||||| | ||||||||| | ||| ||||||||||| || || ||| |||||| | Sbjct 25583 ATCTGAAAGCTGTAGAAACAACGAGCTTCGGTAATCTGGACCTCCTGACAGAATCGTGCT 25642 Query 50340 AGCTAAA 50346 | ||||| Sbjct 25643 ACCTAAA 25649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715693869200520