Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq994 150 2e-31 seq3845 134 1e-26 seq6658 93.3 4e-14 seq5418 93.3 4e-14 >seq994 Length=361151 Score = 150 bits (166), Expect = 2e-31 Identities = 329/485 (68%), Gaps = 7/485 (1%) Strand=Plus/Minus Query 121038 TAGAAGGGTTGATATTAAAAGGAATAAATATTAATTATGTACCTGGAAAAAGAGGTTGGT 121097 |||||||| | | | ||||| | ||| | | |||| || |||||| || |||| Sbjct 158636 TAGAAGGGCTAGTTCTGAAAGGCACAAACAACACGTATGAGCCAGGAAAACGACATTGGC 158577 Query 121098 TAAAGATGAAGAAGGATTACTTAGATGATGGATCCATGGCAGATTCTGCAGACTTAGTAG 121157 |||| || || || |||||| |||| |||||| | ||||||||||| || || | || | Sbjct 158576 TAAAAATTAAAAAAGATTACCTAGAAGATGGAGCAATGGCAGATTCAGCTGATCTTGTTG 158517 Query 121158 TTTTAGGATCATATTACGGTAAAGGGTCTAAGGGTGGTACACCATCAATATTTTTAATGG 121217 || | ||| |||||| || | || ||| ||||| | ||||||||| | |||| Sbjct 158516 TTCTTGGAGCATATTTTGGAACTGGAAATAAAGGTGGAATGATGTCAATATTTCTGATGG 158457 Query 121218 GGTGTTATGATAATGAAAGTAATAATTGGAAAACTGTAACTAAA-TGC--TCCGGACACA 121274 | ||||| ||| || ||||| || ||| ||||| || ||| ||| ||||| Sbjct 158456 GATGTTACGATCCTGCTAGTAAAAAATGGTGTACTGTTACAAAAGTGCATGGAGGACATG 158397 Query 121275 ACGATGACACATtaaaaaaagtacaaaaagaaataaagtttttaaaaattagtaaagata 121334 | |||| || || ||||| | |||| || | | | ||||||||| || || Sbjct 158396 ATGATGCTACTTTTGAAAAACTCCAAACTGAGCTGGACATGAAAAAAATTAGGAAGGACC 158337 Query 121335 caaaaaaaatcccaaaaTGGTTAATAGTAAATAAAA-TATATTATCCAGATTTTGTAGTT 121393 ||| ||| | || ||| | | ||| ||||||| | | | ||| |||||||| | | Sbjct 158336 CAAGTAAAGTTCCTGCTTGGCTGAAAGTGAATAAAACTCTCAT-TCCTGATTTTGTTGCT 158278 Query 121394 TGTGATCCaaaaaaaTCACAGGTATGGGAAATATCCGGATCTAGTTTTACAAAATCTATA 121453 |||||| ||||| || | ||||||||||| ||| | ||||||||| | | | Sbjct 158277 AATGATCCTAAAAACTCCCCAGTATGGGAAATTGTTGGAGCAGAATTTACAAAAGC-AGA 158219 Query 121454 CAT-CACACAGCAGATGGTATTTCAATAAGATTTCCTAGATTTaaaaaaaTTAGATATGA 121512 || || ||||| |||| || || || | ||||| ||| || |||||| || |||| Sbjct 158218 AATCCATACAGCCAATGGAATCTCTATTCGTTTTCCAAGAGTTGCAAAAATCCGAGATGA 158159 Query 121513 TAAAA 121517 |||| Sbjct 158158 CAAAA 158154 >seq3845 Length=110360 Score = 134 bits (148), Expect = 1e-26 Identities = 170/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 13884 CAATGAAGGC---CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940 ||| |||||| ||||||||||||| |||||||| || ||||| || || |||||| Sbjct 72998 CAAAGAAGGCTTACCTCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATC 72939 Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000 | |||| || || | ||| ||||||| ||||||||||| ||||||||||| ||||| Sbjct 72938 AGACCTCTCTTCTTAAGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCC 72879 Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14060 || |||||||| |||| | ||| || ||||| | ||| | | |||||| || Sbjct 72878 ACAGCAGCAAAGGCTACAACTCGCTCACCAAAAGTAGCTGTAGGATGACCTATCCAGTTG 72819 Query 14061 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 |||||| || | ||| || || | | || || |||||||| ||||| || Sbjct 72818 AGAGCCCAATCTGCTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAA 72766 Score = 100 bits (110), Expect = 3e-16 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 14261 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14320 |||||||||||| || ||||||||||| ||||| || |||| |||| |||||||| Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976 Query 14321 TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT-AAATCCTTAGAAAGATCTACTTCAT 14379 ||| || || | || | || | ||| | | || | || || || ||||| ||||| | Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACT-GTATCAGGTCTTTGGACAGATCAACTTCTT 70917 Query 14380 CAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATA 14439 | || ||||| || ||| | ||||| |||||||| ||| || ||| ||| | Sbjct 70916 CTACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAA 70857 Query 14440 TAGGAAAAACTACAAATCT-CGAAGATGTTTCT 14471 | ||||||| |||||||| ||| ||| ||||| Sbjct 70856 TGGGAAAAATAACAAATCTCCGAGGAT-TTTCT 70825 >seq6658 Length=47451 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13951 |||||||||| || || |||||||| ||||| || || || ||||||| ||| | || Sbjct 24834 CCTCATCTCTGCTTATCAGTTCGTTACTGAAA--GTCAAGCCAGGCATCATTCCCCTCTT 24891 Query 13952 ttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 |||||||| || || | ||||| || || |||||||| || || || || ||||| || Sbjct 24892 CTTTAACCAGAAGATAGAGGCAAAGGAACCCGAAAAGAAGATCCCTTCTACAGCAGCGAA 24951 Query 14012 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14071 |||| | ||| || ||| | || ||||| ||||| || ||||| || Sbjct 24952 GGCTACAAGTCGCTCAGGAAATGGGGCAGCATTGTTATCAATCCAGTTCAGGGCCCAATC 25011 Query 14072 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 || || || |||| | | | |||||||||||||| || Sbjct 25012 AGCCTTCTTCTTAACACAGGGTAAGGTTTCAATAGCATTGAA 25053 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 |||| || || | ||||| ||||||||||| ||||| || ||||| | || || |||| Sbjct 26426 CCAAGTTCTCCATCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAA 26485 Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTT 14376 ||| | |||||| || | || |||||||| | | || ||||| | || |||| Sbjct 26486 AGTGTCTTTCTTCAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTT 26545 Query 14377 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14436 | ||| | ||||| || ||| | ||||| || ||||| |||| || ||| || Sbjct 26546 CTTCAGCAGTCCAGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACT 26605 Query 14437 ATATAGGAAAAACTACAAATC 14457 || || |||| |||||||| Sbjct 26606 CAATTGGTAAAATTACAAATC 26626 >seq5418 Length=65370 Score = 93.3 bits (102), Expect = 4e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 || |||||||||| ||| | |||||||||||||| || || ||||||| || |||| | Sbjct 9157 TTCTGATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGT 9098 Query 13641 TCCATAAAATCAAATGGATTT 13661 ||||||||||||||||||||| Sbjct 9097 TCCATAAAATCAAATGGATTT 9077 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 14262 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14321 |||||||||||||| ||||||||||| ||||| || ||||| | | |||||||| | Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860 Query 14322 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCA 14381 ||||||| || | | || ||| || ||| |||||| || | || ||||| || Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800 Query 14382 ACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATA 14441 |||||||||| ||| | || | || ||||| ||| || ||| ||| || Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740 Query 14442 GGAAAAACTACAAATCT 14458 ||||| | |||||| || Sbjct 6739 GGAAACATTACAAACCT 6723 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/225 (69%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 || |||||||| || || |||| ||||| | |||||||| ||| || || ||||| | Sbjct 8854 ACCTTATCACAGCCAAGCTCTAGTAGTAGACGATCAGCAACAAATTCTATGTATTGTTTC 8795 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 || || | |||||||||||| || | || || | || ||||||||||||| | Sbjct 8794 ATCAATTGACAATTCATACCAATCAAAGCCACTGGTAAAGCATCAGTTAAAAATTCTTGT 8735 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCA--TTAGAAGGAGGATATT 13851 || || |||||| ||||| ||||| | | || |||| || || || || Sbjct 8734 TCAATTTTCACAGCTTCTTTAATAATC--TCCACTACTCTCTCCTTGGATGGTTTATTGA 8677 Query 13852 TTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 ||||| |||| | || || ||||||||||| || || |||| Sbjct 8676 CAAGATGACTAAACAGCAAGCAGGCAAAATCACAGTGTAGACCCT 8632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478008217096200