Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3845 134 1e-26 seq994 134 1e-26 seq6658 87.8 2e-12 seq5418 84.2 2e-11 >seq3845 Length=110360 Score = 134 bits (148), Expect = 1e-26 Identities = 176/241 (73%), Gaps = 7/241 (3%) Strand=Plus/Minus Query 13672 CAATGAAGGC---CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13728 ||| |||||| ||||||||||||| |||||||| || ||||| || || |||||| Sbjct 72998 CAAAGAAGGCTTACCTCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATC 72939 Query 13729 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 13788 | |||| || || | ||| ||||||| || ||||| || ||||||||||| ||||| Sbjct 72938 AGACCTCTCTTCTTAAGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCC 72879 Query 13789 ACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA--TATCCATT 13846 || |||||||| |||| | ||| || ||||| | || | | | ||| |||||| | Sbjct 72878 ACAGCAGCAAAGGCTACAACTCGCTCACCAAAAGTAGC--TGTAGGATGACCTATCCAGT 72821 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906 | |||||| || | ||| || || | | || || ||||| ||||||||||| | || Sbjct 72820 TGAGAGCCCAATCTGCTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGAT 72761 Query 13907 G 13907 | Sbjct 72760 G 72760 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/202 (71%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 14046 CAAG-TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 |||| |||||||||||||| ||||||||||| ||||| || |||| |||| ||||| Sbjct 71039 CAAGATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAA 70980 Query 14105 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 ||| ||| || || | || | || | ||| | | || || || ||||| |||| Sbjct 70979 AGTGTTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTT 70920 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14224 | || || ||||| || ||| | ||||| |||||||| ||| || ||| ||| Sbjct 70919 CTTCTACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATT 70860 Query 14225 ATATAGGAAAAACTACAAATCT 14246 || ||||||| |||||||| Sbjct 70859 CAATGGGAAAAATAACAAATCT 70838 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 |||||||| ||||| | || || |||||||| || || | ||||| || || || || Sbjct 72335 ATGTATGTGTCAATTAACAAACTGTACATTTCTGAATGGACATTTTCAATGGCAATTTGG 72276 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTC 14042 |||||||||||||| |||||||||| ||| || ||| | ||||||||| Sbjct 72275 AAACCATAAAAACACCTAGCTTCTGTTACTTGAACTTCCTGGCTAAATCTTTC 72223 >seq994 Length=361151 Score = 134 bits (148), Expect = 1e-26 Identities = 357/535 (67%), Gaps = 9/535 (2%) Strand=Plus/Minus Query 120752 TAGAAGGGTTGATATTAAAAGGAATAAATATCGATTATGTACCTGGAAAAAGAGGTTGGT 120811 |||||||| | | | ||||| | ||| | | |||| || |||||| || |||| Sbjct 158636 TAGAAGGGCTAGTTCTGAAAGGCACAAACAACACGTATGAGCCAGGAAAACGACATTGGC 158577 Query 120812 TAAAGATGAAGAAGGATTACTTAAATGATGGATCCATGGCAGATTCTGCAGACTTAGTAG 120871 |||| || || || |||||| || | |||||| | ||||||||||| || || | || | Sbjct 158576 TAAAAATTAAAAAAGATTACCTAGAAGATGGAGCAATGGCAGATTCAGCTGATCTTGTTG 158517 Query 120872 TTTTAGGATCATATTACGGTAAAGGCTCTAAGGGTGGCACACCATCGATATTTTTAATGG 120931 || | ||| |||||| || | || ||| ||||| | || |||||| | |||| Sbjct 158516 TTCTTGGAGCATATTTTGGAACTGGAAATAAAGGTGGAATGATGTCAATATTTCTGATGG 158457 Query 120932 GGTGCTATGATAATGAAAGTAATAATTGGAAAACAGTAACTAAA-TGC--TCCGGCCACG 120988 | || || ||| || ||||| || ||| || || || ||| ||| || || | Sbjct 158456 GATGTTACGATCCTGCTAGTAAAAAATGGTGTACTGTTACAAAAGTGCATGGAGGACATG 158397 Query 120989 ACGATGACACATTaaaaaaagtacaaaaagaaatagagtttttaaaaattagtaaagata 121048 | |||| || || ||||| | |||| || | || | ||||||||| || || Sbjct 158396 ATGATGCTACTTTTGAAAAACTCCAAACTGAGCTGGACATGAAAAAAATTAGGAAGGACC 158337 Query 121049 caaaaaaaatcccaaaaTGGTTAATAGTAGATAAAA-TATATTATCCAGATTTTGTAGTT 121107 ||| ||| | || ||| | | ||| |||||| | | | ||| |||||||| | | Sbjct 158336 CAAGTAAAGTTCCTGCTTGGCTGAAAGTGAATAAAACTCTCAT-TCCTGATTTTGTTGCT 158278 Query 121108 TGTGATCCaaaaaaaTCACAGGTGTGGGAAATATCGGGATCTAGTTTTACAAAATCGATA 121167 |||||| ||||| || | || |||||||| ||| | ||||||||| | | | Sbjct 158277 AATGATCCTAAAAACTCCCCAGTATGGGAAATTGTTGGAGCAGAATTTACAAAAGC-AGA 158219 Query 121168 CAT-CACACAGCAGATGGGATTTCGATAAGATTTCCTAGATTTaaaaaaaTTAGATATGA 121226 || || ||||| |||| || || || | ||||| ||| || |||||| || |||| Sbjct 158218 AATCCATACAGCCAATGGAATCTCTATTCGTTTTCCAAGAGTTGCAAAAATCCGAGATGA 158159 Query 121227 TAAAAATTGGTTATCAGCTACAAATTTGAACGAACT-TAAGAATT-TATACAAAG 121279 |||| ||| | ||| ||||| || | ||| | ||||||| | || |||| Sbjct 158158 CAAAACATGGAAAGAAGCCACAAACTTACAGGAATTACAAGAATTGTTTAAAAAG 158104 >seq6658 Length=47451 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 ||||||| || | || || ||||||||||| ||||| || ||||| | || || |||| Sbjct 26426 CCAAGTTCTCCATCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAA 26485 Query 14105 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 ||| | |||||| || | || |||||||| | | || ||||| | || |||| Sbjct 26486 AGTGTCTTTCTTCAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTT 26545 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14224 | ||| | ||||| || ||| | ||||| || ||||| |||| || ||| || Sbjct 26546 CTTCAGCAGTCCAGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACT 26605 Query 14225 ATATAGGAAAAACTACAAATC 14245 || || |||| |||||||| Sbjct 26606 CAATTGGTAAAATTACAAATC 26626 >seq5418 Length=65370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 14049 GTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14108 |||||||||||| || ||||||||||| ||||| || ||||| | | |||||||| Sbjct 6920 GTTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTG 6861 Query 14109 TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATC 14168 | ||||||| || | | || ||| || || |||||| || | || ||||| || Sbjct 6860 TCTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTC 6801 Query 14169 AACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATAT 14228 |||||||||| ||| | || | || ||||| ||| || ||| ||| || Sbjct 6800 TGCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAAT 6741 Query 14229 AGGAAAAACTACAAATCTT 14247 ||||| | |||||| ||| Sbjct 6740 GGGAAACATTACAAACCTT 6722 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 || |||||||||| ||| | |||||||| ||||| || || ||||||| || |||| | Sbjct 9157 TTCTGATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGT 9098 Query 13429 TCCATAAAATCGAATGGATTT 13449 ||||||||||| ||||||||| Sbjct 9097 TCCATAAAATCAAATGGATTT 9077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476873101028520