Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq629 125 5e-24 seq1267 114 1e-20 seq5467 104 2e-17 seq4435 96.9 3e-15 >seq629 Length=499154 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||||||||| || | ||| | ||| ||||||||| | |||||||| || Sbjct 6192 CCACCACGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAG 6133 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||||| | || || | |||||| || ||||| |||| || |||||| || | || Sbjct 6132 AGTGTACGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGG 6073 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || | | | |||||| | | ||| || Sbjct 6072 ATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCACT 6013 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || || || ||||||||||||||||| Sbjct 6012 TCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||||| || || | ||| || | || |||| |||||| || ||||| Sbjct 5928 TCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTCCAGTTGTTTACCAGCAAAG 5869 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| || |||||| || | || | ||||| || || |||| |||| || | Sbjct 5868 ATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTC 5809 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | |||||| | | ||| || || | || || |||||||| || || || |||||| Sbjct 5808 TCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACA 5749 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 5748 AAAATTTGCAT 5738 >seq1267 Length=316221 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| ||||| ||||| | ||| | ||| || ||||| | || || || || Sbjct 206430 GCCCCCACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGA 206489 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||| || | || ||||| ||||| || |||||||| |||| |||||| || | || Sbjct 206490 CAATGTGCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGG 206549 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || || | ||||| | ||| ||||| | || ||| || Sbjct 206550 AATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCAC 206609 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| ||||| ||||| ||||| || ||||| Sbjct 206610 TTCCAGAGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | || || | ||| || || | || ||| ||||| | ||||||||| || Sbjct 206202 GCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGA 206261 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || | | | || ||||| || || || ||||||||||| | ||| || || | || Sbjct 206262 TAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGG 206321 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || |||| | || || | ||| |||||| | | || || Sbjct 206322 GATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAAC 206381 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| ||||| || ||||||||||| || ||||| Sbjct 206382 TTCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 >seq5467 Length=66102 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||||||||| || | ||| | ||| || || || | ||| ||||| || Sbjct 29593 CCACCACGCAGTCTTAGGACAAGATGCAAAGTAGATTCTTTCTGAATATTATAATCAGAA 29652 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || |||| ||||| || |||||||||| || |||||| || | || Sbjct 29653 AGGGTCCGTCCATCCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGTCAGGTGGA 29712 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| |||| || | ||| |||||| | | || || Sbjct 29713 ATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTCTCAATTGTGTCACTTGGTTCCACC 29772 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || || || || |||||||| ||||| Sbjct 29773 TCCAAAGTGATAGTTTTTCCAGTGAGGGTCTTGACAAAAATCTGCAT 29819 >seq4435 Length=89394 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||||| || | ||||| || | ||| |||||| || | ||| ||||| || Sbjct 36272 GCCACCACGCAACCTAAGTACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATCTGA 36213 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || ||||| ||||| || ||||||||||||| |||||||| | || Sbjct 36212 TAAGGTGCGACCATCTTCCAACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGG 36153 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || || |||| || | ||| || || | | || || Sbjct 36152 AATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCACTGGGTTCAAC 36093 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || || ||||| ||||| |||||||| Sbjct 36092 TTCCAGAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||||||||| | ||||| || | || || || || | |||||||| || Sbjct 36728 GCCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGA 36669 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || | | | || |||||||| || || |||||||| || | ||||| || | || Sbjct 36668 CAGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGG 36609 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || ||| |||| || | | | ||| || | | || || Sbjct 36608 GATTCCCTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTAC 36549 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || |||||||| || ||||| || ||||||||||||||| Sbjct 36548 CTCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 42920 CCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAA 42979 |||| || | ||| ||||| || || || || | || || |||||||| || ||||||| Sbjct 32844 CCTTCTGAATATTATAATCTGATAAGGTGCGCCCATCTTCTAATTGTTTCCCTGCAAAAA 32785 Query 42980 TCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGC 43039 |||||| |||||||| | || | |||||||| || ||| |||| || | Sbjct 32784 TCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTT 32725 Query 43040 CAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAA 43099 ||| || || | | || || || | |||||||| || || || |||||||| || | Sbjct 32724 CAATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGA 32665 Query 43100 AAATTTGCAT 43109 | || ||||| Sbjct 32664 AGATCTGCAT 32655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380036602769994