Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3845 143 4e-29 seq5418 125 1e-23 seq994 123 3e-23 seq6658 122 1e-22 seq1632 102 1e-16 >seq3845 Length=110360 Score = 143 bits (158), Expect = 4e-29 Identities = 167/225 (74%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||| || || || | || ||||| || || | ||| | Sbjct 72985 CCTCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCT 72926 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 ||||||| ||||| || |||||||| ||||||||||| || || || || || ||||||| Sbjct 72925 TAAGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGG 72866 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 42263 | | || || ||| ||| || || | ||| |||||| || |||||||||| | Sbjct 72865 CTACAACTCGCTCACCAAAAGTAGCTGTAGGATGACCTATCCAGTTGAGAGCCCAATCTG 72806 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 42308 | ||||| || |||||||||| ||||| || ||||| || |||| Sbjct 72805 CTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGAT 72761 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510 |||||| || || || || ||||| || ||||| || |||| | || ||||| | Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976 Query 42511 TTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 42570 || ||| || | |||| || | ||| | | | ||||| || | ||| |||||||| Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTC 70916 Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAAT 42630 ||| ||||| ||||| || ||||| || |||||||| | |||||| || | |||| ||| Sbjct 70915 TACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAAT 70856 Query 42631 TGGGAAAATAACAAATCT 42648 || |||||||||||||| Sbjct 70855 GGGAAAAATAACAAATCT 70838 >seq5418 Length=65370 Score = 125 bits (138), Expect = 1e-23 Identities = 162/223 (73%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | || || ||| ||||| || ||||| ||||||||||||| Sbjct 8159 CCTCATCTCTGCTGATCAGCTCATTACTAAAAGTGAGACCAGGCATCAGGCCACGCTTTT 8100 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || ||||| || ||||| || || ||||||||||| || ||||| | Sbjct 8099 TTAGCCAGAAAATTGAAGCAAAAGACCCAGAGAAAAATATTCCTTCTACAGCAGCAAAAG 8040 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 42263 | | || || ||| ||| | || | ||| ||||| | ||||||| || | Sbjct 8039 CCACAACTCGCTCACCAAATGTTGCTGTAGGATGGCTAATCCAAGTGAGAGCCCAGTCTG 7980 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 | ||||| |||||||| |||| || || || ||||| || || Sbjct 7979 CTTTCTTCTTTACACATGGCAAGGTCTCAATTGCATTGAAAAG 7937 Score = 116 bits (128), Expect = 5e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42452 TTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 42511 ||||| || ||||| || ||||| || ||||| || ||||| ||||| ||||| | | Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860 Query 42512 TTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCT 42571 |||| || | |||| | | ||| |||| | ||| || |||| || ||||||||| Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800 Query 42572 ACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATT 42631 | ||||||||||| || |||||| | || ||||| | |||||| || | |||| ||| Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740 Query 42632 GGGAAAATAACAAATCT 42648 || || || ||||| || Sbjct 6739 GGAAACATTACAAACCT 6723 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTT 41774 ||||||| ||| | || | || ||| | || ||||| || || ||| ||||| | Sbjct 9216 TTTAAAAATCAGCGTCAAGAGTAAACTTATGCTCTTCCCGTTTAGCCATGACTCCACACT 9157 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | || ||||||||||| ||||| || || || ||||| |||||||| || |||| || Sbjct 9156 TCTGATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGTT 9097 Query 41835 CCATGAAATCAAACGGATT 41853 |||| |||||||| ||||| Sbjct 9096 CCATAAAATCAAATGGATT 9078 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 42315 TTTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 ||||||| ||| || | || || || || || | ||||||||||||||| |||| | Sbjct 7532 TTTCATTTGGATCCTTGATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACAT 7473 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 |||||||||| || || || || || ||||| || || ||||| ||||| ||||| Sbjct 7472 TTTCAATGGCAATTTGGAAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTC 7418 >seq994 Length=361151 Score = 123 bits (136), Expect = 3e-23 Identities = 654/1023 (64%), Gaps = 36/1023 (4%) Strand=Plus/Minus Query 165057 CCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTTTAAAAAATTTCCATCAGGA 165116 ||||||||||| ||| | || |||||| | | || || || ||||||||| ||| Sbjct 159150 CCCATGTTAGCTGAACCTTGCAGTTCTGTGGAATATGCCTTCAAGAAATTTCCAAGTGGA 159091 Query 165117 ATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTCATaaaaaaaaTAACGAG 165176 |||| ||| ||| | || || ||||||||||| ||||| || || ||| | || | Sbjct 159090 ATGTATGCTGAAATAAAGTATGATGGTGAAAGGGTACAGGTCCACAAACATGGAGACAAA 159031 Query 165177 TTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAAGTGGATTATCTCAAA 165236 ||| | |||||| ||| | ||||| || | |||| ||| | |||| ||| Sbjct 159030 TTTAATTATTTTAGTCGAAGTTTAAAACCCGTGATGCCTCACAAAATTTCACATCTGAAA 158971 Query 165237 GAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTGGATTCTGAAATTGTT 165296 ||||||||||| ||||| ||| |||||| | | || | ||| |||| | | Sbjct 158970 GAATACATACCTAAAGCTTTTCCTCAAGCTAGTGATTTGATACTTGATAGTGAAGTACTA 158911 Query 165297 CTTGTAGACGAACATAATGTA---CCGCTACCGTTTGGAAGTTTAGGTATACACAAAAAG 165353 ||||||||| || | || || || || ||||||| ||||| | || ||||| Sbjct 158910 CTTGTAGACACTCAAACTGGGAAGCCACTTCCATTTGGAACATTAGGAGTTCATAAAAAA 158851 Query 165354 AAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTGTTTGCACTTTGATGGA 165413 | | || | | | |||||||||| || |||||||| | |||| | ||||| Sbjct 158850 GCTGCTTTCAAGGATGCAAGTGTGTGTTTGTTTGTCTTTGACTGCATTCACTATAATGGA 158791 Query 165414 TTCGATATGACGGACATTCCATTGTACGA---ACG-AAGATCTTTTCTCA-AAGATGTTA 165468 || | | ||| ||| || | || ||| || || | ||||| || ||| | Sbjct 158790 GAAAATCTAATGGAGCGTCCTTTATCTGAGAGACGCAACATTCTGTCTCAGAACATG--A 158733 Query 165469 TGGTCGAAATACCCAATAGAATAGTATTCTCAGAGTTGA--CTAATATTAGTAACG--AG 165524 ||| | || ||| || | || ||||| ||| || | ||| || || Sbjct 158732 TGG---AGATTAAAAATCACATCATGTTTTCAGAAATGAAGCTTGTGATAGAAAAAGAAG 158676 Query 165525 T-CTCAGTTAACCGATGTATTGGATGATGCACTAACGAGAAAATTAGAAGGATTGGTCTT 165583 | || | || ||| ||| || || ||| || |||||||| | || | Sbjct 158675 TACTAAAAAAA---ATG-ATTCAATCTGCCATTAATCAGGGT-TTAGAAGGGCTAGTTCT 158621 Query 165584 AAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTAAAAATAAAGCGAGA 165643 |||| | || || || || ||||| || ||| ||||||| || ||| Sbjct 158620 GAAAGGCACAAACAACACGTATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGA 158561 Query 165644 CTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCTTACTA 165703 || | | || || | ||||||||||| || ||| | || || || || || || | Sbjct 158560 TTACCTAGAAGATGGAGCAATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTT 158501 Query 165704 TGGTAAAGGAGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGTTGTTACGACGATGA 165763 ||| | ||| || ||||| || ||| || | ||||| ||||| |||||||| || Sbjct 158500 TGGAACTGGAAATAAAGGTGGAATGATGTCAATATTTCTGATGGGATGTTACGATCCTG- 158442 Query 165764 ATCCGGTAAA---TGGAAGACGGTAACTAAA-TG--TTCCGGCCACGATGATAATACGTT 165817 | ||||| ||| || || || ||| || | || || |||||| ||| || Sbjct 158441 --CTAGTAAAAAATGGTGTACTGTTACAAAAGTGCATGGAGGACATGATGATGCTACTTT 158384 Query 165818 AAGGGTTTTACAAGACCAATTAAAGATGGTTAAAATTAACAAGGATCCCaaaaaaaTTCC 165877 | ||| | | | ||| ||||||| ||||| || | ||| |||| Sbjct 158383 TGAAAAACTCCAAACTGAGCTGGACATGAAAAAAATTAGGAAGGACCCAAGTAAAGTTCC 158324 Query 165878 AGTGTGGTTGGTAGTTAATAAAATCTAT-ATTCCCGATTTTGTAGTAGAGGATCCAAAAC 165936 | ||| || ||| ||||||| || | ||||| |||||||| | | ||||| ||| Sbjct 158323 TGCTTGGCTGAAAGTGAATAAAA-CTCTCATTCCTGATTTTGTTGCTAATGATCCTAAAA 158265 Query 165937 AATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACGTCTTCA-AAGTCACATACAGCA 165995 | || | ||||||||||| |||||||| ||||| || || || |||||||| Sbjct 158264 ACTCCCCAGTATGGGAAATTGTTGGAGCAGAATTTACAAAAGCAGAAATC-CATACAGCC 158206 Query 165996 AATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAACGTGGAAA 166055 |||||||| || ||| | ||||| ||| || | | || |||| || ||||| |||||| Sbjct 158205 AATGGAATCTCTATTCGTTTTCCAAGAGTTGCAAAAATCCGAGATGACAAAACATGGAAA 158146 Query 166056 GAA 166058 ||| Sbjct 158145 GAA 158143 >seq6658 Length=47451 Score = 122 bits (134), Expect = 1e-22 Identities = 161/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | |||||| || || | || ||||| | || | ||| | Sbjct 24834 CCTCATCTCTGCTTATCAGTTCGTTACTGAAAGTCAAGCCAGGCATCATTCCCCTCTTCT 24893 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || ||||| ||||| || || ||||||||||| |||||||| || || |||| Sbjct 24894 TTAACCAGAAGATAGAGGCAAAGGAACCCGAAAAGAAGATCCCTTCTACAGCAGCGAAGG 24953 Query 42207 CAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263 | | ||||| ||| | | | ||| ||| || ||||| || | |||||||| | Sbjct 24954 CTACAAGTCGCTCAGGAAATGGGGCAGCATTGTTATCAATCCAGTTCAGGGCCCAATCAG 25013 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 ||||||| || ||||| || | ||||| || ||||| ||||| Sbjct 25014 CCTTCTTCTTAACACAGGGTAAGGTTTCAATAGCATTGAAGAG 25056 >seq1632 Length=265768 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 71135 GATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACG 71194 ||||| |||||||||||| || || | || | ||| | ||| ||||| || || || | Sbjct 18440 GATTACTTACTTGAAATTCACCTGAGAGGACACGACGGGAGTATATATTGCTTGTGTAAG 18499 Query 71195 GTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254 |||| | |||||||| ||||| | ||| || |||||||| ||||| ||||||||||| | Sbjct 18500 GTTCAATAGACTCATTGTTTCCAAGAATCTGGGCAGTTGAAGCAGTTGGCATAGGTGCAA 18559 Query 71255 CCAATAGACTATTTCTAAGACCATGT 71280 | || || ||||| | |||||| Sbjct 18560 TGAGTAAGCTGTTTCTCAAGCCATGT 18585 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || |||||||| || || ||||| ||| | || || ||||||||||||| Sbjct 17145 TCCACCCATAGAAATGCATGCTGGTCAGTTTTCCATAATTGGGGTCAGCTATGTGAATAT 17204 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||||| ||||| || || ||||| | ||| || |||| || ||||| | Sbjct 17205 TCAGAGACTGACTCTGATCAATAAATGCTCCTCGGTCAGCTCCCATCTTGATGATAAGCC 17264 Query 70988 TTTGTGGAATTTCCCAAATAGTT 71010 ||| ||||||||||| | |||| Sbjct 17265 GTTGGGGAATTTCCCACACAGTT 17287 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 ||||| || ||||| || || || | || |||||| || ||||||| ||||||||| Sbjct 21155 TATGTTTCATATGGCCCCAACTTCTCAGATAATTCACAGCTTGCCTCTACAGCTCCATAA 21214 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||| || || ||||||| | || || ||| ||||| || |||||||||||| Sbjct 21215 TAAATAGTCTCAAAAATCTGAATGTTTAGTAGTTGGGCTTCTTTACTGTCAAATGGATAA 21274 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | ||||| || || ||||||| || ||||| ||||| || || |||| ||| | Sbjct 21275 CGCATAAGAATGAAGGCATCTGCTAGCCCCTGAACACCAATGCCAATTGGTCGATGTTTT 21334 Query 71563 TTATTAGA 71570 || || || Sbjct 21335 TTGTTTGA 21342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||||||| ||||| ||||| ||||||| || || || || || | || || || | Sbjct 50439 CACTAAATGTCTTTTTAGTTTCTTTGTGTAAGTTGGAGACAGCAATGCGAGCAGCAAGGA 50498 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||||||||||||||| || || || || || |||||||||| | |||| | Sbjct 50499 GAGCATAATCTGGATGTTTAGTTGTCATGGTTGCAGCAGTTTCTGCTGCTAAGTTGTCAA 50558 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 72928 ||| || || ||||| ||| ||||| || | ||| ||||||| || Sbjct 50559 GTTCAACTGTCGTTACACCAGGATATAAGCCATTGATGACCTTCAAAG 50606 Score = 86.0 bits (94), Expect = 8e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 71748 TATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 71807 || ||| || || || | |||||||| ||||||||||| | || || || || ||| Sbjct 23381 TACAATCTCTGTACATAAGTTACTACATTTGATGGTTCCAAGGTTCTGCTGGTTTGACTT 23440 Query 71808 TTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTAT 71867 | ||||||| ||||| || || || || | || || |||||||||| ||||| ||||| Sbjct 23441 TCTGTTACAGGCATCTTTGTAGAGCATGTATGGTGTCCCAGTTTCAACCTGAGCTTCTAA 23500 Query 71868 AATCGCTTTCCA 71879 ||| || | ||| Sbjct 23501 AATTGCATACCA 23512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668733224692680