Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq3845 143 4e-29
seq5418 125 1e-23
seq994 123 3e-23
seq6658 122 1e-22
seq1632 102 1e-16
>seq3845
Length=110360
Score = 143 bits (158), Expect = 4e-29
Identities = 167/225 (74%), Gaps = 3/225 (1%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
||||||||||||| || | ||| || || || | || ||||| || || | ||| |
Sbjct 72985 CCTCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCT 72926
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
||||||| ||||| || |||||||| ||||||||||| || || || || || |||||||
Sbjct 72925 TAAGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGG 72866
Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 42263
| | || || ||| ||| || || | ||| |||||| || |||||||||| |
Sbjct 72865 CTACAACTCGCTCACCAAAAGTAGCTGTAGGATGACCTATCCAGTTGAGAGCCCAATCTG 72806
Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 42308
| ||||| || |||||||||| ||||| || ||||| || ||||
Sbjct 72805 CTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGAT 72761
Score = 114 bits (126), Expect = 2e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510
|||||| || || || || ||||| || ||||| || |||| | || ||||| |
Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976
Query 42511 TTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 42570
|| ||| || | |||| || | ||| | | | ||||| || | ||| ||||||||
Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTC 70916
Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAAT 42630
||| ||||| ||||| || ||||| || |||||||| | |||||| || | |||| |||
Sbjct 70915 TACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAAT 70856
Query 42631 TGGGAAAATAACAAATCT 42648
|| ||||||||||||||
Sbjct 70855 GGGAAAAATAACAAATCT 70838
>seq5418
Length=65370
Score = 125 bits (138), Expect = 1e-23
Identities = 162/223 (73%), Gaps = 3/223 (1%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| || || | || || ||| ||||| || ||||| |||||||||||||
Sbjct 8159 CCTCATCTCTGCTGATCAGCTCATTACTAAAAGTGAGACCAGGCATCAGGCCACGCTTTT 8100
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| || || || ||||| || ||||| || || ||||||||||| || ||||| |
Sbjct 8099 TTAGCCAGAAAATTGAAGCAAAAGACCCAGAGAAAAATATTCCTTCTACAGCAGCAAAAG 8040
Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 42263
| | || || ||| ||| | || | ||| ||||| | ||||||| || |
Sbjct 8039 CCACAACTCGCTCACCAAATGTTGCTGTAGGATGGCTAATCCAAGTGAGAGCCCAGTCTG 7980
Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306
| ||||| |||||||| |||| || || || ||||| || ||
Sbjct 7979 CTTTCTTCTTTACACATGGCAAGGTCTCAATTGCATTGAAAAG 7937
Score = 116 bits (128), Expect = 5e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 42452 TTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 42511
||||| || ||||| || ||||| || ||||| || ||||| ||||| ||||| | |
Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860
Query 42512 TTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCT 42571
|||| || | |||| | | ||| |||| | ||| || |||| || |||||||||
Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800
Query 42572 ACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATT 42631
| ||||||||||| || |||||| | || ||||| | |||||| || | |||| |||
Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740
Query 42632 GGGAAAATAACAAATCT 42648
|| || || ||||| ||
Sbjct 6739 GGAAACATTACAAACCT 6723
Score = 87.8 bits (96), Expect = 2e-12
Identities = 103/139 (74%), Gaps = 3/139 (2%)
Strand=Plus/Minus
Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTT 41774
||||||| ||| | || | || ||| | || ||||| || || ||| ||||| |
Sbjct 9216 TTTAAAAATCAGCGTCAAGAGTAAACTTATGCTCTTCCCGTTTAGCCATGACTCCACACT 9157
Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834
| || ||||||||||| ||||| || || || ||||| |||||||| || |||| ||
Sbjct 9156 TCTGATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGTT 9097
Query 41835 CCATGAAATCAAACGGATT 41853
|||| |||||||| |||||
Sbjct 9096 CCATAAAATCAAATGGATT 9078
Score = 86.0 bits (94), Expect = 8e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 42315 TTTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374
||||||| ||| || | || || || || || | ||||||||||||||| |||| |
Sbjct 7532 TTTCATTTGGATCCTTGATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACAT 7473
Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429
|||||||||| || || || || || ||||| || || ||||| ||||| |||||
Sbjct 7472 TTTCAATGGCAATTTGGAAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTC 7418
>seq994
Length=361151
Score = 123 bits (136), Expect = 3e-23
Identities = 654/1023 (64%), Gaps = 36/1023 (4%)
Strand=Plus/Minus
Query 165057 CCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTTTAAAAAATTTCCATCAGGA 165116
||||||||||| ||| | || |||||| | | || || || ||||||||| |||
Sbjct 159150 CCCATGTTAGCTGAACCTTGCAGTTCTGTGGAATATGCCTTCAAGAAATTTCCAAGTGGA 159091
Query 165117 ATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTCATaaaaaaaaTAACGAG 165176
|||| ||| ||| | || || ||||||||||| ||||| || || ||| | || |
Sbjct 159090 ATGTATGCTGAAATAAAGTATGATGGTGAAAGGGTACAGGTCCACAAACATGGAGACAAA 159031
Query 165177 TTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAAGTGGATTATCTCAAA 165236
||| | |||||| ||| | ||||| || | |||| ||| | |||| |||
Sbjct 159030 TTTAATTATTTTAGTCGAAGTTTAAAACCCGTGATGCCTCACAAAATTTCACATCTGAAA 158971
Query 165237 GAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTGGATTCTGAAATTGTT 165296
||||||||||| ||||| ||| |||||| | | || | ||| |||| | |
Sbjct 158970 GAATACATACCTAAAGCTTTTCCTCAAGCTAGTGATTTGATACTTGATAGTGAAGTACTA 158911
Query 165297 CTTGTAGACGAACATAATGTA---CCGCTACCGTTTGGAAGTTTAGGTATACACAAAAAG 165353
||||||||| || | || || || || ||||||| ||||| | || |||||
Sbjct 158910 CTTGTAGACACTCAAACTGGGAAGCCACTTCCATTTGGAACATTAGGAGTTCATAAAAAA 158851
Query 165354 AAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTGTTTGCACTTTGATGGA 165413
| | || | | | |||||||||| || |||||||| | |||| | |||||
Sbjct 158850 GCTGCTTTCAAGGATGCAAGTGTGTGTTTGTTTGTCTTTGACTGCATTCACTATAATGGA 158791
Query 165414 TTCGATATGACGGACATTCCATTGTACGA---ACG-AAGATCTTTTCTCA-AAGATGTTA 165468
|| | | ||| ||| || | || ||| || || | ||||| || ||| |
Sbjct 158790 GAAAATCTAATGGAGCGTCCTTTATCTGAGAGACGCAACATTCTGTCTCAGAACATG--A 158733
Query 165469 TGGTCGAAATACCCAATAGAATAGTATTCTCAGAGTTGA--CTAATATTAGTAACG--AG 165524
||| | || ||| || | || ||||| ||| || | ||| || ||
Sbjct 158732 TGG---AGATTAAAAATCACATCATGTTTTCAGAAATGAAGCTTGTGATAGAAAAAGAAG 158676
Query 165525 T-CTCAGTTAACCGATGTATTGGATGATGCACTAACGAGAAAATTAGAAGGATTGGTCTT 165583
| || | || ||| ||| || || ||| || |||||||| | || |
Sbjct 158675 TACTAAAAAAA---ATG-ATTCAATCTGCCATTAATCAGGGT-TTAGAAGGGCTAGTTCT 158621
Query 165584 AAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTAAAAATAAAGCGAGA 165643
|||| | || || || || ||||| || ||| ||||||| || |||
Sbjct 158620 GAAAGGCACAAACAACACGTATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGA 158561
Query 165644 CTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCTTACTA 165703
|| | | || || | ||||||||||| || ||| | || || || || || || |
Sbjct 158560 TTACCTAGAAGATGGAGCAATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTT 158501
Query 165704 TGGTAAAGGAGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGTTGTTACGACGATGA 165763
||| | ||| || ||||| || ||| || | ||||| ||||| |||||||| ||
Sbjct 158500 TGGAACTGGAAATAAAGGTGGAATGATGTCAATATTTCTGATGGGATGTTACGATCCTG- 158442
Query 165764 ATCCGGTAAA---TGGAAGACGGTAACTAAA-TG--TTCCGGCCACGATGATAATACGTT 165817
| ||||| ||| || || || ||| || | || || |||||| ||| ||
Sbjct 158441 --CTAGTAAAAAATGGTGTACTGTTACAAAAGTGCATGGAGGACATGATGATGCTACTTT 158384
Query 165818 AAGGGTTTTACAAGACCAATTAAAGATGGTTAAAATTAACAAGGATCCCaaaaaaaTTCC 165877
| ||| | | | ||| ||||||| ||||| || | ||| ||||
Sbjct 158383 TGAAAAACTCCAAACTGAGCTGGACATGAAAAAAATTAGGAAGGACCCAAGTAAAGTTCC 158324
Query 165878 AGTGTGGTTGGTAGTTAATAAAATCTAT-ATTCCCGATTTTGTAGTAGAGGATCCAAAAC 165936
| ||| || ||| ||||||| || | ||||| |||||||| | | ||||| |||
Sbjct 158323 TGCTTGGCTGAAAGTGAATAAAA-CTCTCATTCCTGATTTTGTTGCTAATGATCCTAAAA 158265
Query 165937 AATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACGTCTTCA-AAGTCACATACAGCA 165995
| || | ||||||||||| |||||||| ||||| || || || ||||||||
Sbjct 158264 ACTCCCCAGTATGGGAAATTGTTGGAGCAGAATTTACAAAAGCAGAAATC-CATACAGCC 158206
Query 165996 AATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAACGTGGAAA 166055
|||||||| || ||| | ||||| ||| || | | || |||| || ||||| ||||||
Sbjct 158205 AATGGAATCTCTATTCGTTTTCCAAGAGTTGCAAAAATCCGAGATGACAAAACATGGAAA 158146
Query 166056 GAA 166058
|||
Sbjct 158145 GAA 158143
>seq6658
Length=47451
Score = 122 bits (134), Expect = 1e-22
Identities = 161/223 (72%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| || || | |||||| || || | || ||||| | || | ||| |
Sbjct 24834 CCTCATCTCTGCTTATCAGTTCGTTACTGAAAGTCAAGCCAGGCATCATTCCCCTCTTCT 24893
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| | ||| || ||||| ||||| || || ||||||||||| |||||||| || || ||||
Sbjct 24894 TTAACCAGAAGATAGAGGCAAAGGAACCCGAAAAGAAGATCCCTTCTACAGCAGCGAAGG 24953
Query 42207 CAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263
| | ||||| ||| | | | ||| ||| || ||||| || | |||||||| |
Sbjct 24954 CTACAAGTCGCTCAGGAAATGGGGCAGCATTGTTATCAATCCAGTTCAGGGCCCAATCAG 25013
Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306
||||||| || ||||| || | ||||| || ||||| |||||
Sbjct 25014 CCTTCTTCTTAACACAGGGTAAGGTTTCAATAGCATTGAAGAG 25056
>seq1632
Length=265768
Score = 102 bits (112), Expect = 1e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 71135 GATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACG 71194
||||| |||||||||||| || || | || | ||| | ||| ||||| || || || |
Sbjct 18440 GATTACTTACTTGAAATTCACCTGAGAGGACACGACGGGAGTATATATTGCTTGTGTAAG 18499
Query 71195 GTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254
|||| | |||||||| ||||| | ||| || |||||||| ||||| ||||||||||| |
Sbjct 18500 GTTCAATAGACTCATTGTTTCCAAGAATCTGGGCAGTTGAAGCAGTTGGCATAGGTGCAA 18559
Query 71255 CCAATAGACTATTTCTAAGACCATGT 71280
| || || ||||| | ||||||
Sbjct 18560 TGAGTAAGCTGTTTCTCAAGCCATGT 18585
Score = 100 bits (110), Expect = 4e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| || || |||||||| || || ||||| ||| | || || |||||||||||||
Sbjct 17145 TCCACCCATAGAAATGCATGCTGGTCAGTTTTCCATAATTGGGGTCAGCTATGTGAATAT 17204
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
||| |||||||| ||||| || || ||||| | ||| || |||| || ||||| |
Sbjct 17205 TCAGAGACTGACTCTGATCAATAAATGCTCCTCGGTCAGCTCCCATCTTGATGATAAGCC 17264
Query 70988 TTTGTGGAATTTCCCAAATAGTT 71010
||| ||||||||||| | ||||
Sbjct 17265 GTTGGGGAATTTCCCACACAGTT 17287
Score = 100 bits (110), Expect = 4e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442
||||| || ||||| || || || | || |||||| || ||||||| |||||||||
Sbjct 21155 TATGTTTCATATGGCCCCAACTTCTCAGATAATTCACAGCTTGCCTCTACAGCTCCATAA 21214
Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502
||||| || || ||||||| | || || ||| ||||| || ||||||||||||
Sbjct 21215 TAAATAGTCTCAAAAATCTGAATGTTTAGTAGTTGGGCTTCTTTACTGTCAAATGGATAA 21274
Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562
| ||||| || || ||||||| || ||||| ||||| || || |||| ||| |
Sbjct 21275 CGCATAAGAATGAAGGCATCTGCTAGCCCCTGAACACCAATGCCAATTGGTCGATGTTTT 21334
Query 71563 TTATTAGA 71570
|| || ||
Sbjct 21335 TTGTTTGA 21342
Score = 87.8 bits (96), Expect = 2e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|||||||| ||||| ||||| ||||||| || || || || || | || || || |
Sbjct 50439 CACTAAATGTCTTTTTAGTTTCTTTGTGTAAGTTGGAGACAGCAATGCGAGCAGCAAGGA 50498
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880
|||||||||||||||| || || || || || |||||||||| | |||| |
Sbjct 50499 GAGCATAATCTGGATGTTTAGTTGTCATGGTTGCAGCAGTTTCTGCTGCTAAGTTGTCAA 50558
Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 72928
||| || || ||||| ||| ||||| || | ||| ||||||| ||
Sbjct 50559 GTTCAACTGTCGTTACACCAGGATATAAGCCATTGATGACCTTCAAAG 50606
Score = 86.0 bits (94), Expect = 8e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 71748 TATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 71807
|| ||| || || || | |||||||| ||||||||||| | || || || || |||
Sbjct 23381 TACAATCTCTGTACATAAGTTACTACATTTGATGGTTCCAAGGTTCTGCTGGTTTGACTT 23440
Query 71808 TTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTAT 71867
| ||||||| ||||| || || || || | || || |||||||||| ||||| |||||
Sbjct 23441 TCTGTTACAGGCATCTTTGTAGAGCATGTATGGTGTCCCAGTTTCAACCTGAGCTTCTAA 23500
Query 71868 AATCGCTTTCCA 71879
||| || | |||
Sbjct 23501 AATTGCATACCA 23512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 668733224692680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |