Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4435 136 3e-27 seq1156 132 3e-26 seq1267 123 2e-23 seq5467 116 3e-21 seq629 109 4e-19 >seq4435 Length=89394 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 ||| || | || ||| | || || |||||||| || ||||| || ||||||||||| Sbjct 36728 GCCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGA 36669 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || |||| | ||||| ||||| || ||||| | || || | ||||||||| || Sbjct 36668 CAGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGG 36609 Query 15256 AATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||| || || || ||| || ||| || ||| |||| || ||||| || ||||| Sbjct 36608 GATTCCCTCCTTATCTTGAATCTTAGCT-TTCACATTTTCGATTGTATCACTGGGTTCTA 36550 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| |||||||| ||||||||||| || |||||||||||||| Sbjct 36549 CCTCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCAT 36501 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | ||| || | || || ||||| ||||| || || || || || ||||| Sbjct 36273 TGCCACCACGCAACCTAAGTACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATCTG 36214 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | ||||| || ||||| || || | ||||| | |||||| || || Sbjct 36213 ATAAGGTGCGACCATCTTCCAACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTG 36154 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||||||||| || ||||||| |||||| |||| || ||||| || ||| | Sbjct 36153 GAATTCCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCACTGGGTTCAA 36094 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 36093 CTTCCAGAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | || | ||||| ||||| || || ||||| || ||||| ||||| Sbjct 36499 CCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGAC 36440 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||||| | |||||||| ||||| || || | || || | |||||||| |||| Sbjct 36439 AGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTGGA 36380 Query 15257 ATTCCTTCTTTGT-CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| | | | ||||||| || ||| |||| || || || || ||| || Sbjct 36379 ATTCCTTCTTTATCCTGGATTTTTGCT-TTCACATTTTCAATAGTGTCACTGGGTTCAAC 36321 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || || || ||||| |||||||| || || || ||||| Sbjct 36320 TTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Score = 95.1 bits (104), Expect = 9e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 |||||||||||||| || || | ||||| | |||||| || ||||||||||||||| Sbjct 32809 TCTTCTAATTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTA 32750 Query 15269 T-CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 | | | ||||||| || || |||| || ||||| || ||| || || | ||| || Sbjct 32749 TCCTGGATTTTTGCT-TTCACGTTTTCAATAGTATCACTGGGTTCAACTTCGAGGGTTAT 32691 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| |||||||| || || || ||||| Sbjct 32690 AGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 32655 >seq1156 Length=327524 Score = 132 bits (146), Expect = 3e-26 Identities = 162/220 (74%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 || ||| | |||||| ||||| ||||| || || |||||||| ||| |||| | || Sbjct 17704 TAGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGATAGTGTTCTTCCATC 17645 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||||| || || || || |||| || | ||||| || |||||||||||||| || Sbjct 17644 TTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGAATTCCTTCTTTATC 17585 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| ||||||| | || || || || ||| ||||| ||||||||||| || Sbjct 17584 TTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACTTCTAAGGTAATAGT 17525 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAA 15370 || ||||||| ||||||||||| || ||||| |||||| Sbjct 17524 CTTTCCTGTCAAGGTTTTTACAAAGATCTGCAT-TTTGAA 17486 >seq1267 Length=316221 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | |||||| || ||||| || ||||| || || || |||||||| ||||| | Sbjct 205747 CCACCACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATC--TG 205804 Query 15197 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || |||| | || || | ||| |||||||| | || || | || ||||| | Sbjct 205805 ACAAGGTTCTTCCATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAG 205864 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || ||||| || |||||| ||| ||| |||| || || || || ||| | Sbjct 205865 GGATCCCCTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCAA 205924 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| |||||||||||||||||||| || ||||| |||||||| Sbjct 205925 CTTCCAGGGTGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCAT 205973 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || | | ||| || |||| |||||| || || |||||||| ||||| || || Sbjct 206429 TGCCCCCACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTC-- 206486 Query 15195 TTAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTT 15252 | | ||| || | || || || ||||| ||||| | || || | |||||||| Sbjct 206487 TGACAATGTGCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGG 206546 Query 15253 TGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTC 15312 ||||||||||||||||| ||||||| ||| ||| |||| ||||| || ||| || Sbjct 206547 GGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTC 206606 Query 15313 TACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | || || ||||| ||||| || ||||||||||| || ||||| Sbjct 206607 CACTTCCAGAGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| ||||| | || | ||||| ||||| || || |||||||| || |||||||| Sbjct 206201 TGCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAG 206260 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | |||| | ||||| || || || || || | ||||| | || ||||| | Sbjct 206261 ATAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAG 206320 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | |||||||||||||| || || ||| ||| |||| || || || || ||| | Sbjct 206321 GGATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAA 206380 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | |||| |||||||||||| || || || ||||| ||||| || ||||| Sbjct 206381 CTTCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| ||||| | || | ||||| ||||| || || |||||||| || |||||||| Sbjct 205973 TGCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAG 206032 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | |||| | ||||| || || || || || | ||||| | ||| ||||| | Sbjct 206033 ATAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAG 206092 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || ||||| || ||||| |||||| |||| || || || || ||| | Sbjct 206093 GGATCCCCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAA 206152 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| || ||||||||||||||||| || ||||| || ||||| Sbjct 206153 CTTCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 >seq5467 Length=66102 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||| | ||| | |||||| || || || ||||| || ||||| || Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | |||||| || || | || | | ||| ||||| |||| Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 15257 ATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| || ||||||| |||||| | || || ||||| ||| |||||| Sbjct 29941 ATACCTTCTTTGTCTTGAATTTTTGCT-TTTACATTCTCAATAGTATCACTAGGTTCTAC 29999 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||||||||| || || || ||||| ||||| || ||||| Sbjct 30000 TTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 >seq629 Length=499154 Score = 109 bits (120), Expect = 4e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || |||||| || | ||| | || || || ||||| ||||||||||| | Sbjct 6192 CCACCACGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATC--TG 6135 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | || | || |||| |||||| ||||| | |||| | |||||||| || Sbjct 6134 AGAGTGTACGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTG 6075 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | || ||||| ||||| || |||||| |||||| | ||||| || || || || Sbjct 6074 GGATGCCTTCCTTGTCTTGGATCTTTGCT-TTTACATTCTCTATTGTGTCACTTGGCTCC 6016 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || |||||||| || || || || || |||||||||||||| Sbjct 6015 ACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| ||||| || |||||||| |||||||| || || ||| | || || Sbjct 5947 AACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTTCGACCATCCTC 5888 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| ||||| | |||| | |||||||| ||| || ||||| ||||| Sbjct 5887 CAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTG 5828 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || |||||| |||||| | ||||| || || || || || || || || ||||||| Sbjct 5827 GATCTTTGCT-TTTACATTCTCTATTGTGTCACTTGGCTCCACTTCCAAAGTGATGGTTT 5769 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || || || |||||||||||||| Sbjct 5768 TTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360913278777213