Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq629 105 6e-18
seq5467 104 2e-17
seq1156 96.9 3e-15
seq1267 95.1 1e-14
>seq629
Length=499154
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873
||| || |||| ||||| || | ||||| ||||||||||||||||| |||||||| |
Sbjct 6193 TCCACCACGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGA 6134
Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933
| ||| | ||||| || |||||||| ||| | || |||||||| || || ||
Sbjct 6133 GAGTGTACGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGG 6074
Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993
| ||| || ||||| || || |||||| | | | || || | ||||||
Sbjct 6073 GATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCAC 6014
Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||| | || |||||||| || || | || || ||||||||||||||
Sbjct 6013 TTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966
>seq5467
Length=66102
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
||||||| ||| | | |||| || | || || |||||||| |||||||| || |
Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | |||||||| |||||||| ||| |||| ||||| ||||| || ||
Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| || |||||||| |||||| |||||| | | | |||||| | ||| || |
Sbjct 29941 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACT 30000
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | ||||||||||| || |||| ||||| ||||| || |||||
Sbjct 30001 TCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 18807 ATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGT 18866
||| | |||| || |||| |||| || | ||||| ||||| || || |||||||| |
Sbjct 29585 ATTTTGTTCCACCACGCAGTCTTAGGACAAGATGCAAAGTAGATTCTTTCTGAATATTAT 29644
Query 18867 AATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGAT 18926
|||| | | || | ||||||||||||||||| ||| |||| |||||||| || |
Sbjct 29645 AATCAGAAAGGGTCCGTCCATCCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGT 29704
Query 18927 CCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG 18986
| || | ||| |||||||| || || |||||| | | | || || | |
Sbjct 29705 CAGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTTACATTCTCAATTGTGTCACTTG 29764
Query 18987 GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
| ||| || | || || ||||| || || | || ||||||||||| |||||
Sbjct 29765 GTTCCACCTCCAAAGTGATAGTTTTTCCAGTGAGGGTCTTGACAAAAATCTGCAT 29819
>seq1156
Length=327524
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| ||||| || |||||||||||||| | | |||| | | || || ||||| || ||
Sbjct 17688 GTGGACTCTTTCTGAATATTGTAATCTGATAGTGTTCTTCCATCTTCTAGCTGCTTTCCT 17629
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| | || | |||||| ||||| ||| | || ||||| || ||||| |||
Sbjct 17628 GCAAATATTAATCTCTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCCTTT 17569
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | ||| || | |||||| ||| | |||||| || || ||||| || |||
Sbjct 17568 ACATTCTCAATAGTGTCACTAGGCTCTACTTCTAAGGTAATAGTCTTTCCTGTCAAGGTT 17509
Query 19025 TTGACAAAAATTTGCATTTTAAA 19047
|| ||||| || |||||||| ||
Sbjct 17508 TTTACAAAGATCTGCATTTTGAA 17486
>seq1267
Length=316221
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| || ||||| || || || | ||| | || |||||||| || || || ||||| | |
Sbjct 205747 CCACCACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGAC 205806
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| ||| | | |||||||| || || || ||| |||| | |||||||| || ||
Sbjct 205807 AAGGTTCTTCCATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGG 205866
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| |||||||| || |||||| || || | | | ||| || | || || |
Sbjct 205867 ATCCCCTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCAACT 205926
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | ||| |||||||||||||| | ||| || ||||| ||||||||
Sbjct 205927 TCCAGGGTGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCAT 205973
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
||||||| | ||| | ||| | ||| | || ||||| ||||||||||||||||| |
Sbjct 205975 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206034
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| ||| | | || |||| ||| || || ||| |||| | || ||||| || ||
Sbjct 206035 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGG 206094
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| |||||||| || ||||| ||||| | | | ||| || | || || |
Sbjct 206095 ATCCCCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCACTTGGTTCAACT 206154
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | ||| || ||||||||||| | ||| || ||||| || |||||
Sbjct 206155 TCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413123747967442
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |