Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq1267 120 2e-22
seq4435 95.1 8e-15
>seq1267
Length=316221
Score = 120 bits (132), Expect = 2e-22
Identities = 166/231 (72%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | || || ||| || || | ||| ||||||||||| ||||||||||||||
Sbjct 205975 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206034
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
||| | | || ||||| |||||||| ||| || || | ||||||||| | ||
Sbjct 206035 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGG 206094
Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
|| || ||||| || | | | ||| ||||| ||| ||| ||||| | |||| |
Sbjct 206095 ATCCCCTCTTTATCCTGGATTTTAGCC---TTTACGTTTTCAATAGTGTCACTTGGTTCA 206151
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| ||||| || || ||||| || || ||||| || || || || ||||||
Sbjct 206152 ACTTCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCATG 206202
Score = 120 bits (132), Expect = 2e-22
Identities = 166/231 (72%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | || || ||| || || | ||| ||||||||||| ||||||||||||||
Sbjct 206203 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206262
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
||| | | || ||||| |||||||| ||| || || | |||||||| | ||
Sbjct 206263 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGG 206322
Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
|| |||||||| || | | | ||| || || ||| ||| ||||| |||||| |
Sbjct 206323 ATTCCTTCTTTGTCTTGGATCTTAGCC---TTCACATTTTCAATTGTGTCACTGGGTTCA 206379
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| || || || || ||||| || ||||| ||||| || || || ||||||
Sbjct 206380 ACTTCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCATG 206430
>seq4435
Length=89394
Score = 95.1 bits (104), Expect = 8e-15
Identities = 163/235 (69%), Gaps = 14/235 (6%)
Strand=Plus/Minus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | || || || || || | ||| |||||||| || || || ||||| |||
Sbjct 36499 CCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGAC 36440
Query 33203 AAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258
| ||||| || || || || ||||| ||| ||||| | || ||||| |
Sbjct 36439 A----GAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGG 36384
Query 33259 GGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315
|| || |||||||| || | | | || ||| || ||| ||| ||||| ||||
Sbjct 36383 TGGAATTCCTTCTTTATCCTGGATTTTTGC---TTTCACATTTTCAATAGTGTCACTGGG 36327
Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| ||| || || ||||| || || || ||||||||||| ||||| || ||||||
Sbjct 36326 TTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCATG 36272
Score = 89.7 bits (98), Expect = 3e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
||||| || | || || ||||| || || |||||||| |||| | | || |||
Sbjct 36709 ACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAGGGTTCTTCCATCTTCC 36650
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
|||||||| ||| ||| ||||| | ||| ||||| | || || || || || || |
Sbjct 36649 AATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGATTCCCTCCTTATCTTGA 36590
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
||| ||| || ||| || || || |||||| || || || || || ||||||
Sbjct 36589 ATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACCTCAAGGGTGATGGTTTTT 36530
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || ||||| || || |||||||||||
Sbjct 36529 CCTGTCAGAGTCTTAACAAAAATTTGCAT 36501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 317663379942114
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |