Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1267 120 2e-22 seq4435 95.1 8e-15 >seq1267 Length=316221 Score = 120 bits (132), Expect = 2e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || || ||| || || | ||| ||||||||||| |||||||||||||| Sbjct 205975 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206034 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| | | || ||||| |||||||| ||| || || | ||||||||| | || Sbjct 206035 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGAGGG 206094 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || || ||||| || | | | ||| ||||| ||| ||| ||||| | |||| | Sbjct 206095 ATCCCCTCTTTATCCTGGATTTTAGCC---TTTACGTTTTCAATAGTGTCACTTGGTTCA 206151 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| || || ||||| || || ||||| || || || || |||||| Sbjct 206152 ACTTCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCATG 206202 Score = 120 bits (132), Expect = 2e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || || ||| || || | ||| ||||||||||| |||||||||||||| Sbjct 206203 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206262 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| | | || ||||| |||||||| ||| || || | |||||||| | || Sbjct 206263 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGG 206322 Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || |||||||| || | | | ||| || || ||| ||| ||||| |||||| | Sbjct 206323 ATTCCTTCTTTGTCTTGGATCTTAGCC---TTCACATTTTCAATTGTGTCACTGGGTTCA 206379 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || ||||| || ||||| ||||| || || || |||||| Sbjct 206380 ACTTCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCATG 206430 >seq4435 Length=89394 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || || || || || | ||| |||||||| || || || ||||| ||| Sbjct 36499 CCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGAC 36440 Query 33203 AAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 | ||||| || || || || ||||| ||| ||||| | || ||||| | Sbjct 36439 A----GAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGG 36384 Query 33259 GGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315 || || |||||||| || | | | || ||| || ||| ||| ||||| |||| Sbjct 36383 TGGAATTCCTTCTTTATCCTGGATTTTTGC---TTTCACATTTTCAATAGTGTCACTGGG 36327 Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||| || || ||||| || || || ||||||||||| ||||| || |||||| Sbjct 36326 TTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCATG 36272 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || ||||| || || |||||||| |||| | | || ||| Sbjct 36709 ACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAGGGTTCTTCCATCTTCC 36650 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| ||| ||| ||||| | ||| ||||| | || || || || || || | Sbjct 36649 AATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGATTCCCTCCTTATCTTGA 36590 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || ||| || || || |||||| || || || || || |||||| Sbjct 36589 ATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACCTCAAGGGTGATGGTTTTT 36530 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || ||||||||||| Sbjct 36529 CCTGTCAGAGTCTTAACAAAAATTTGCAT 36501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317663379942114