Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1267 107 2e-18 seq5467 98.7 8e-16 seq4435 96.9 3e-15 seq629 96.9 3e-15 >seq1267 Length=316221 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| | ||||| ||| || || ||||| || |||||||| || |||||||| Sbjct 206203 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206262 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||||||||| || || || ||| |||| | |||||| || || || Sbjct 206263 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGG 206322 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| || || ||||| | ||| | || | ||||| | Sbjct 206323 ATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACT 206382 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | |||||||||||||||||| | ||||| ||||| || ||||| Sbjct 206383 TCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 102 bits (112), Expect = 7e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 |||||||| | ||| || |||||||||||||| ||||| || || || || | | Sbjct 206443 CTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGACCA 206502 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 || ||||| ||||| || ||| |||| | |||||||| || ||| | ||||||||| Sbjct 206503 TCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCTTTG 206562 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || |||||| || || | ||| | || | ||| ||| ||||| || || Sbjct 206563 TCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGTGATA 206622 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAACT 20217 ||||| || || | |||||| ||||| || ||||| |||| || Sbjct 206623 GTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCATCCTTAATCT 206666 >seq5467 Length=66102 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || | || |||| ||| || || ||||| ||||| || ||||| || Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || ||| |||| |||||| || ||| |||| || || || || || || Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||||| ||| || | ||| || ||| | |||||| | Sbjct 29941 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACT 30000 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||||||||||||| || | ||||| ||||| || ||||| Sbjct 30001 TCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 >seq4435 Length=89394 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | |||| ||||| || || || |||||||| || ||||||||||| | Sbjct 36727 CCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGAC 36668 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||||||||| || || ||| |||| | ||| ||||| || || Sbjct 36667 AGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGG 36608 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || || || ||| || |||||| | | | | ||| | ||||| Sbjct 36607 ATTCCCTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACC 36548 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | ||| |||||||| || |||| || || ||||||||||||||| Sbjct 36547 TCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500 >seq629 Length=499154 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| | | |||| |||| |||||| |||||||||||||| |||||||| | | Sbjct 5964 CCTCCCCTCAGCCTCGGAACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGT--CAG 5907 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| || || ||| |||| |||||| || ||| | || || |||||||| || | Sbjct 5906 AAAGTGTTCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTG 5847 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||| ||||| || ||| ||| || | | | | || | || ||| Sbjct 5846 GGATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTCACTTGGCTCCA 5787 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || |||||||| || || | || || |||||||||||||| Sbjct 5786 CTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418120621186833