Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3845 105 6e-18 seq5418 100 2e-16 seq6658 86.0 5e-12 >seq3845 Length=110360 Score = 105 bits (116), Expect = 6e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 || || || || || || || || |||||||||||||| | |||||| || || |||||| Sbjct 72335 ATGTATGTGTCAATTAACAAACTGTACATTTCTGAATGGACATTTTCAATGGCAATTTGG 72276 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTC 13533 |||||||||||||| ||||| |||| ||| |||||||| | ||||||||| Sbjct 72275 AAACCATAAAAACACCTAGCTTCTGTTACTTGAACTTCCTGGCTAAATCTTTC 72223 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 13541 TTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtttt 13600 ||||| ||||| ||||| |||||||||||||| ||||| || ||||| |||||| | | Sbjct 71034 TTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTGT 70975 Query 13601 ttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCA 13660 | ||| | |||| || || ||| | | | ||||| || | ||| || || || Sbjct 70974 TGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTCT 70915 Query 13661 ACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATG 13720 || ||||| || ||||| | || |||||||||||| ||| || || || ||||| Sbjct 70914 ACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAATG 70855 Query 13721 GGAAACACAACGTATCT 13737 ||||| | ||| |||| Sbjct 70854 GGAAAAATAACAAATCT 70838 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || ||||| | ||| ||||| || |||| || ||| Sbjct 72983 TCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCTTA 72924 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||| | ||||| || || ||||| ||||| || || || || ||||| ||| Sbjct 72923 AGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGGCT 72864 Query 13295 ATCAAC-CTTTCACCATACGTA 13315 | |||| | |||||| | ||| Sbjct 72863 A-CAACTCGCTCACCAAAAGTA 72843 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||| ||||| |||| || | ||||||||||||||||| || ||||| || || || | Sbjct 75552 TTTCTGATACTCGCCCACCTTCTTTTCAAAAAAGTTTGTCTTGCCTTCCAAAGATATGTG 75493 Query 12919 TTCCATAAAATCGAAAGGATTTT 12941 |||||||||||| |||||||||| Sbjct 75492 TTCCATAAAATCAAAAGGATTTT 75470 >seq5418 Length=65370 Score = 100 bits (110), Expect = 2e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 || || || || || || || |||||||||||||| |||| |||||| || || |||||| Sbjct 7515 ATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACATTTTCAATGGCAATTTGG 7456 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 |||||||||||||| ||||| || | |||||| ||||| Sbjct 7455 AAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTC 7418 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 |||||| ||||||||||| |||||||||||||| ||||| | | || |||||| | Sbjct 6920 GTTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTG 6861 Query 13600 tttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTC 13659 | |||| | ||| |||| | ||| || | ||| || ||||| || || || || Sbjct 6860 TCTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTC 6801 Query 13660 AACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAAT 13719 | |||||||| ||||| | ||| |||| |||||| ||| || || || |||| Sbjct 6800 TGCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAAT 6741 Query 13720 GGGAAACA 13727 |||||||| Sbjct 6740 GGGAAACA 6733 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/186 (71%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 12986 TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACA 13045 ||||||||||| |||||||| |||||||| || | ||| ||||| || || || || Sbjct 8821 TCAGCAACAAATTCTATGTATTGTTTCATCAATTGACAATTCATACCAATCAAAGCCACT 8762 Query 13046 GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTT 13105 || | ||| || |||||||| | || ||| || | || ||||| ||| || || Sbjct 8761 GGTAAAGCATCAGTTAAAAATTCTTGTTCAATTTTCACAGCTTCTTTAATAATCTC---C 8705 Query 13106 ATTACGTTCTCTAATGGAGGAT---TTGA-TAGATGCTTAAACATCATACATGCAAAATC 13161 | ||| |||| |||| | | |||| ||||| |||||| || || |||||||| Sbjct 8704 ACTACTCTCTC-CTTGGATGGTTTATTGACAAGATGACTAAACAGCAAGCAGGCAAAATC 8646 Query 13162 ACAGTG 13167 |||||| Sbjct 8645 ACAGTG 8640 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAG-ACATT 12859 ||||||||||| || |||| ||| || || ||| || | ||| || ||| | Sbjct 9216 TTTAAAAATCAGCGTCAAGAGTAAACTTATGCTCTTCCCGTTTAGCCATGACTCCACACT 9157 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 | | ||||||| | ||| | |||||||| ||||| || || ||||| || ||||||| | Sbjct 9156 TCT-GATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGT 9098 Query 12920 TCCATAAAATCGAAAGGATTTT 12941 ||||||||||| || ||||||| Sbjct 9097 TCCATAAAATCAAATGGATTTT 9076 >seq6658 Length=47451 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 13538 AAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAt 13597 ||||| || | ||||| || |||||||||||||| || || | | ||| || ||||| Sbjct 26428 AAGTTCTCCATCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAAAG 26487 Query 13598 tttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCC 13657 | | |||| | | ||||| ||||||||||| ||||| || || || || || Sbjct 26488 TGTCTTTCTTCAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTTCT 26547 Query 13658 TCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATC 13707 ||| | ||||| || ||||| | || ||||| ||||| ||| ||||| Sbjct 26548 TCAGCAGTCCAGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATC 26597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429475991661786