Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_006144.1 Length=34246 Score E Sequences producing significant alignments: (Bits) Value seq70663 176 1e-39 seq73759 93.3 9e-15 >seq70663 Length=227 Score = 176 bits (194), Expect = 1e-39 Identities = 155/189 (82%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 6045 TGGTCAGAAAACACAATCTGTCGGTTGTCAAGCTTGGTTGCAAAAGACCCGTAGAGGGCG 6104 ||||||||||| ||||||| | | ||||||||||||| ||||| | ||||||||||||| Sbjct 45 TGGTCAGAAAAGACAATCTTTTG--TGTCAAGCTTGGTGGCAAACG-CCCGTAGAGGGCG 101 Query 6105 TTGGAGAGCAACTTGGCGATGGAGCGCTGGGTTTGGtttttttCCCGGTCGGCTTTTTCC 6164 ||||| ||||||||||||||||||||| |||||||| ||||| | || ||||| ||| Sbjct 102 TTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTGG-TTTTTGCGCGATCGGCGCGCTCC 160 Query 6165 TTGGCTGCGATGTTGAGCTGGACGTACTCCCTGGCCACGCACTTCCAGCCGGGAAAAACG 6224 ||||| |||||||| ||||| ||||| || | || |||||| ||| |||| ||||| Sbjct 161 TTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACCGCCATTCGGG--AAACG 218 Query 6225 GCCGTGCGC 6233 | |||||| Sbjct 219 GTGGTGCGC 227 >seq73759 Length=212 Score = 93.3 bits (102), Expect = 9e-15 Identities = 83/103 (81%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 6491 CGCCAAG-GCGCGCTCGTAGGGACTGAGGGGGGCGCCCCAGGGCATGGGATGCGTCAGGG 6549 || |||| ||||||||||| || |||| |||| ||||| |||||||| || || || | Sbjct 74 CGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGACCCCATGGCATGGGGTGGGTGAGCG 133 Query 6550 CCGAGGCGTACATGCCGCAGATGTCGTAGACGTAAAGGGGCTC 6592 | ||||||||||||||||| ||||| | |||| | ||||||| Sbjct 134 CGGAGGCGTACATGCCGCAAATGTCCGAAACGTGAGGGGGCTC 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109092796632128