Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5467 149 6e-31 seq1267 149 6e-31 seq4435 134 1e-26 seq629 113 4e-20 seq1156 100 3e-16 seq2201 87.8 2e-12 >seq5467 Length=66102 Score = 149 bits (164), Expect = 6e-31 Identities = 180/243 (74%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || |||||||||||||||| |||| || | ||| ||||||||||| | Sbjct 29808 AAAAATCTGCATCCCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGAT 29867 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || || || | || || | ||||||||| ||||| || |||| || | |||| Sbjct 29868 ATTGTAGTCAG--AAAGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTT 29925 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| ||||| ||||||||||||||||| | ||||||||| || || | | ||| Sbjct 29926 TGCTGGTCTGGTGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTA 29985 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 ||| | || || || | || |||||||| ||||| || |||||||||||||||||| Sbjct 29986 TCACTAGGTTCTACTTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGC 30045 Query 95006 ATG 95008 ||| Sbjct 30046 ATG 30048 Score = 107 bits (118), Expect = 2e-18 Identities = 154/211 (73%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| |||||||||||||| || || | |||||||| | || || | |||||| Sbjct 29612 CAAGATGCAAAGTAGATTCTTTCTGAATATTATAATCAG--AAAGGGTCCGTCCATCCTC 29669 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||||||| || |||| || | ||| || || || || ||||| ||||||||||| | Sbjct 29670 CAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTG 29729 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTT 94976 || ||||| || || | | |||||| | ||| || || || | ||||| |||| Sbjct 29730 GATCTTTGCTTTTACATTCTCAATTGTGTCA-CTTGGTTCCACCTCCAAAGTGATAGTTT 29788 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| || || || ||||| |||||||| Sbjct 29789 TTCCAGTGAGGGTCTTGACAAAAATCTGCAT 29819 >seq1267 Length=316221 Score = 149 bits (164), Expect = 6e-31 Identities = 168/223 (75%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | ||||||||| ||||| | |||||| || | | | ||| || Sbjct 206442 TCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTC--TGACAATGTGCGA 206499 Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 |||||||| ||||||||| |||| |||||||| || || ||||| ||||| |||||| Sbjct 206500 CCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCT 206559 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 ||||| | |||||| |||||||| | | |||||| | || || || | ||| Sbjct 206560 TTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGTG 206619 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012 || |||||||| || || ||||| |||||||||||||| |||| Sbjct 206620 ATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCATCCTTA 206662 Score = 138 bits (152), Expect = 1e-27 Identities = 178/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||||||||| || || | ||||| ||| || ||||| | || || ||||| || | Sbjct 205734 AAAATTTTACTGACCACCACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTAT 205793 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||||||||| || || | ||||||||| || || || |||| ||||| || || Sbjct 205794 GTTATAATCTGACAAGGTTCTTCCATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTG 205853 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| |||||||| || || ||||| || | |||||| ||||| || | | |||||| Sbjct 205854 CTGGTCTGGAGGGATCCCCTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTC 205913 Query 94948 AGCGTGGT-CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | |||| | || || | ||||||||||| || || ||||| || |||||||| |||| Sbjct 205914 A-CTTGGTTCAACTTCCAGGGTGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCA 205972 Query 95007 TGC 95009 ||| Sbjct 205973 TGC 205975 Score = 120 bits (132), Expect = 3e-22 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||| | | || ||| ||||| | || || || ||||| | || | Sbjct 205967 TTTGCATGCCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGT 206026 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 |||| | ||| | ||| |||| ||| ||||| |||| || || |||||||| | Sbjct 206027 AATCAGATAAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTTTGCTGGT 206086 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 ||||||| || || ||||| || | ||||| ||||| ||| | | ||||||| | | Sbjct 206087 CTGGAGGGATCCCCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTCA-CTT 206145 Query 94953 GGT-CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| | || || | ||||| ||||| || || ||||| || |||||||||||||||| Sbjct 206146 GGTTCAACTTCCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCATGC 206203 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | | || ||| ||||| | || || || ||||| | || ||||| Sbjct 206203 CCTCCTCTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGAT 206262 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||| ||| ||||| |||| || || || ||||| |||||||| Sbjct 206263 AAAGTTCTTCCATCTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGG 206322 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | || || ||||| || | | |||||| | | || || Sbjct 206323 ATTCCTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACT 206382 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | || |||||||| || ||||| |||||||||||||||||||||| Sbjct 206383 TCTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCATGC 206431 >seq4435 Length=89394 Score = 134 bits (148), Expect = 1e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||||||| | | || || ||||| | ||||| || || || | Sbjct 36512 AAAAATTTGCATTCCTCCTCTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGAT 36453 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||||||||| || ||| | ||| || | ||||||||| |||||||||| || || Sbjct 36452 GTTATAATCTGACAGAGTTCTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTG 36393 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || ||||| ||||| |||||||| || | |||||||| || || | | |||||| Sbjct 36392 TTGGTCTGGTGGAATTCCTTCTTTATCCTGGATTTTTGCTTTCACATTTTCAATAGTGTC 36333 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | || || || | || || || || || ||||||||||| || ||||||||||| Sbjct 36332 ACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Query 95008 GC 95009 || Sbjct 36272 GC 36271 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | || || ||||| || | |||||||| | ||| || || ||| | Sbjct 36253 ACCAAGTGAAGTGTGGACTCCTTCTGAATATTATAATC--TGATAAGGTGCGACCATCTT 36196 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| |||||| || |||| || |||||||| |||||||| ||||| |||||||| || | Sbjct 36195 CCAACTGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCTT 36136 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| || || || | | ||| ||| | | || || || | || || |||| Sbjct 36135 GAATTTTGGCTTTTACATTTTCAATAGTATCACTGGGTTCAACTTCCAGAGTAATTGTTT 36076 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||| ||||| |||||||| ||||| Sbjct 36075 TTCCAGTAAGTGTTTTAACAAAGATTTGCAT 36045 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 ||||| || |||| || |||||||| |||||||| ||||| |||||||| || | ||| Sbjct 32800 TGTTTCCCTGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTTATCCTGGATT 32741 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 ||||| || ||| | | ||| ||| | | || || || | || || || || || Sbjct 32740 TTTGCTTTCACGTTTTCAATAGTATCACTGGGTTCAACTTCGAGGGTTATAGTCTTGCCT 32681 Query 94982 GTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||||||||| || ||||||||||||| Sbjct 32680 GTAAGAGTTTTGACGAAGATCTGCATGC 32653 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || || || |||||||| | || ||||| || || | ||| ||||| | Sbjct 36727 CCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGAC 36668 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| |||| || || || |||| ||||| ||||| || |||||||| Sbjct 36667 AGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGG 36608 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | ||| || || || || ||| || ||| | | || || Sbjct 36607 ATTCCCTCCTTATCTTGAATCTTAGCTTTCACATTTTCGATTGTATCACTGGGTTCTACC 36548 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||||||||| || ||||| || ||||| || ||||| Sbjct 36547 TCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCAT 36501 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| || |||||||| ||||| || | || ||||| || || ||| ||| Sbjct 36025 ACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGACAAGGTACGTCCATCTTCC 35966 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| ||||| |||||||||||||||| ||||| || ||||| || || || || | Sbjct 35965 AACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATTCCCTCCTTATCTTGG 35906 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTT 94977 ||||| || |||||| | | ||||| || || || || || | ||||| || || Sbjct 35905 ATTTTAGCTTTGACGTTCTCTATGGTGTC-GCTAGGCTCTACCTCCAAAGTGATTGTCTT 35847 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| |||||||| Sbjct 35846 GCCTGTTAGCGTCTTTACAAATATCTGCAT 35817 >seq629 Length=499154 Score = 113 bits (124), Expect = 4e-20 Identities = 174/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||| |||| | | |||| || | |||||||| ||||| | Sbjct 5977 AAAAATTTGCATCCCTCCCCTCAGCCTCGGAACCAGATGTAGGGTAGATTCTTTTTGGAT 5918 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || || | |||||| || ||||||||| ||||| || ||||||| | ||| Sbjct 5917 GTTGTAGTCAG--AAAGTGTTCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAGTCTC 5860 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || || || || || ||||| ||||| | || ||||| || || | | ||| Sbjct 5859 TGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTG 5800 Query 94946 TCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 ||| | ||| || || || | ||||||||||||||||| || || |||||||| || || Sbjct 5799 TCA-CTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTG 5741 Query 95005 CATG 95008 |||| Sbjct 5740 CATG 5737 Score = 113 bits (124), Expect = 4e-20 Identities = 155/211 (73%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| ||||||||||| |||||||| | ||| ||||| | | ||||| | |||||| Sbjct 6173 CAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATC--TGAGAGTGTACGTCCATCCTC 6116 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||||| || ||||||| | ||| || || || || || || ||||| ||||| | Sbjct 6115 TAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTG 6056 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTT 94976 || ||||| || || | | |||||| | ||| || || || | |||||||||| Sbjct 6055 GATCTTTGCTTTTACATTCTCTATTGTGTCA-CTTGGCTCCACTTCCAAAGTGATGGTTT 5997 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| || || |||||||| || ||||| Sbjct 5996 TTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 >seq1156 Length=327524 Score = 100 bits (110), Expect = 3e-16 Identities = 150/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| || | ||| || || || || | || ||||| | |||||||| ||| || Sbjct 17699 CAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATC--TGATAGTGTTCTTCCATCTTC 17642 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| ||||| |||| |||||||| || ||||| || ||||| |||||||| || | Sbjct 17641 TAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 17582 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||||||||| || | | ||||||| | || || || | || || || || Sbjct 17581 GATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACTTCTAAGGTAATAGTCTT 17522 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | ||||| |||||||||||||| Sbjct 17521 TCCTGTCAAGGTTTTTACAAAGATCTGCAT 17492 >seq2201 Length=213340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| | || ||||| | |||||||||||| || | ||| ||||| | Sbjct 161613 CCACCTCTTAATCTTAGAACTAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAC 161554 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| ||||| ||||||| | ||| ||||| || |||||| Sbjct 161553 AGAGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGA 161494 Query 94901 ATACCT 94906 |||||| Sbjct 161493 ATACCT 161488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446684115273480