Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq238 118 2e-22 seq9467 111 3e-20 seq2284 107 4e-19 seq3121 98.7 2e-16 seq1414 98.7 2e-16 seq649 96.9 7e-16 seq666 95.1 2e-15 seq62 95.1 2e-15 seq104 89.7 1e-13 seq2205 80.6 5e-11 >seq238 Length=807480 Score = 118 bits (130), Expect = 2e-22 Identities = 178/245 (73%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 4460 CAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAG 4519 ||||| | || |||| ||||| ||| || ||||||||| |||| ||||||||| |||| Sbjct 262671 CAACTTTTTATGATAGAAATAGTTACGTGCTTCACTATAGAAATCTGAAACAATATTTAT 262612 Query 4520 -ATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGG 4578 ||| ||| | | || |||||||| || ||| || | || ||||||| || ||| Sbjct 262611 CATTAAGGATGAAA-CTAAAGAAAATTCATAGAGTGTTAGAGTTCAAGCAATCTGATTGG 262553 Query 4579 CTCAAATCATATATCGATAAAAATAC-CGCATGCCGAAAACTAGCTAAGAATGAGTTCGa 4637 || || |||||| ||| ||||| | ||| ||| | ||||| ||||| || || Sbjct 262552 CTTAAGAAATATATTGATTTAAATAAACAAATGA-GAACAAGAGCTACTAATGATTTGGA 262494 Query 4638 aaaaaaC-TTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTAC 4696 |||| | ||||||||||| | |||||| | || |||||||| || ||||| ||| | Sbjct 262493 AAAATATATTTTATAAATTGTTAAATAATTCTGTATTTGGAAA-ACTATGGAAAATATTA 262435 Query 4697 GAAAA 4701 ||||| Sbjct 262434 GAAAA 262430 >seq9467 Length=24768 Score = 111 bits (122), Expect = 3e-20 Identities = 175/246 (71%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 4459 ACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTA 4518 |||||| | || ||||| ||||| || || ||||||||| |||| |||||| || |||| Sbjct 6573 ACAACTTTATATGATAATAATAAATACGTACTTCACTATATAAATCTGAAACGATATTTA 6514 Query 4519 GATTTAGGTTTAGTTCTTAA-GAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTG 4577 |||| | || ||| |||||| ||| ||| || | || ||||||| | || Sbjct 6513 TCATTAG-TAAAGAAAATAAAGAAAATTCACAGAGTGTTAGAGTTCAAGCAATCTTATTG 6455 Query 4578 GCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGa 4637 ||| || |||||| ||| ||||| | | |||| ||||| ||||| || || Sbjct 6454 GCTTAAGAAATATATTGATCTAAATATACAAAGGAGAAATAAAGCTATTAATGATTTTGA 6395 Query 4638 aaaaaa-CTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTAC 4696 |||| | |||||||||||| | |||||| | || ||||||||||| ||| ||| | Sbjct 6394 AAAATATCTTTTATAAATTGTTCAATAATTCAGTATTTGGAAAGAC--TGGCTAATTTTA 6337 Query 4697 GAAAAT 4702 |||||| Sbjct 6336 GAAAAT 6331 >seq2284 Length=200799 Score = 107 bits (118), Expect = 4e-19 Identities = 182/257 (71%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 4449 AAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAA 4508 |||| | | ||||||| | || |||||||| |||||||| ||||||||| |||| |||| Sbjct 188311 AAAATTAATGACAACTTTATATGATAAAAAAAATTATGTGCTTCACTATAGAAATCTGAA 188370 Query 4509 ACAATGTTTAG-ATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGC 4567 ||||| |||| ||||| || | | |||||| || | | || | || || Sbjct 188371 ACAATATTTATCATTTAAAAATAAACCA-ATGAAAATTCATAGAATATTAGAGTTCAAGA 188429 Query 4568 AATCAGACTGGCTCAAATCATATATCGATAAAAATAC-CGCATGCCGAAAACTAGC--TA 4624 |||| || ||||| || |||||| ||| |||||| | || | ||||| | || Sbjct 188430 AATCTGATTGGCTTAAGAAATATATTGATCTAAATACACAAATA---AGAACTAACGTTA 188486 Query 4625 AGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGA 4684 ||||| || |||||| | ||||||||| | | |||||| | || ||||||||||| | Sbjct 188487 CTAATGATTTTGAAAAATA-TTTTATAAACTGTTAAATAATTCAGTATTTGGAAAGACTA 188545 Query 4685 TGGAGAATGTACGAAAA 4701 || | ||| | ||||| Sbjct 188546 TGAAAAATATTAGAAAA 188562 >seq3121 Length=144607 Score = 98.7 bits (108), Expect = 2e-16 Identities = 177/256 (69%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 4449 AAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAA 4508 |||| | | || |||| |||| || || |||||||| || || |||||| |||| |||| Sbjct 48963 AAAATTAATGAGAACTTTGTATGACAAGAATAATTACGTGCTTAACTATAGAAATCTGAA 49022 Query 4509 ACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCA 4568 ||||| |||| |||| || || |||||||| || || || | || |||| Sbjct 49023 ACAATATTTATCATTAGAAATAAA-CTAAAGAAAATTCATACAGAGTTAGAGTTCAAGCA 49081 Query 4569 ATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAA---CTAGCTAA 4625 ||| || ||||| || || ||| ||| |||||| || ||| ||||||| Sbjct 49082 ATCTGATTGGCTTAAGCAATTTATTGATCTAAATAC---ATAAATTAAAGCTCTAGCTAC 49138 Query 4626 GAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGAT 4685 ||| | || |||| | | ||||||||||| | |||||| | || |||| ||| || || Sbjct 49139 TAATAAATTTGAAACATATTTTTATAAATTGTTAAATAATTCTGTATTTGCAAATACTAT 49198 Query 4686 GGAGAATGTACGAAAA 4701 ||| | | | ||||| Sbjct 49199 GGAAACTATTAGAAAA 49214 >seq1414 Length=285139 Score = 98.7 bits (108), Expect = 2e-16 Identities = 180/263 (68%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 4441 AAGCAACAAAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAA 4500 ||| || || || | | ||||||| | | ||| || ||||| || ||| ||||| | Sbjct 167810 AAGAAAAAACAATTAATGACAACTTTACATAGTAAGAAAAATTACGTGCTTCGCTATAGA 167869 Query 4501 AATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAA 4560 ||| |||||||||||||| | || || || |||||||| || | | || || Sbjct 167870 AATCTGAAACAATGTTTATTATCAGAAATAAAACTGAAGAAAATTCATTGAATGTTAGAA 167929 Query 4561 TTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTA 4620 ||| | ||||| | ||||| || |||||| || |||||| || ||| | Sbjct 167930 TTTAAACAATCTCATTGGCTTAAGAAATATATTGACCTAAATACACAATTGAGAACCAGA 167989 Query 4621 GCTAAGAATGAGTTCGaaaaaaa--CTTTTATAAATTAATGAATAATGCGGTTTTTGGAA 4678 |||| |||| || ||||| | ||||||||||| | |||||| | || ||||||| Sbjct 167990 GCTACTAATGGTTTTAAAAAATATTTTTTTATAAATTGTTAAATAATTCTGTATTTGGAA 168049 Query 4679 AGACGATGGAGAATGTACGAAAA 4701 |||| ||||| ||| | ||||| Sbjct 168050 AGACTATGGAAAATATTAGAAAA 168072 Score = 87.8 bits (96), Expect = 4e-13 Identities = 158/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 4480 AATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAG 4539 |||||||| ||||||||| |||| |||||||||||||| | ||| || || ||| Sbjct 243155 AATTATGTGCTTCACTATAGAAATCTGAAACAATGTTTATTATCAGGAATAAAACTGAAG 243096 Query 4540 AAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAA 4599 ||||| || | | || ||||| | ||||| | ||| | || ||| || | | Sbjct 243095 AAAATTCATAGAATGTTAGAATTTAAACAATCTCATTGGTTTAAGAAATACATTTACCTA 243036 Query 4600 AATAC-CGCATGCCGAAAACT--AGCTAAGAATGAGTTCGaaaaaaaCTTTT--ATAAAT 4654 ||||| | || || |||| |||| |||| || |||||| | |||| |||||| Sbjct 243035 AATACACAAAT---GAGAACTAGAGCTGCTAATGGTTTTGAAAAATATTTTTTCATAAAT 242979 Query 4655 TAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701 | | |||||| | || ||||| ||||| ||||| ||| | ||||| Sbjct 242978 TGTTAAATAATTCCGTATTTGGGAAGACTATGGAAAATATTAGAAAA 242932 >seq649 Length=484115 Score = 96.9 bits (106), Expect = 7e-16 Identities = 174/249 (70%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 4458 GACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTT 4517 ||||||| | || ||||| ||||| ||| | ||||||| | ||||| ||| ||| ||| Sbjct 231852 GACAACTTTATATGATAAGAATAACTATATGCTTCACTACAGTAATTTAAAATAATATTT 231793 Query 4518 AGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTG 4577 | ||| | || || |||||||| | ||| || | || ||||||| || || Sbjct 231792 ACCATTACGAATAAAACTAAAGAAAATTAATGGAGTGTTAGAGTTCAAGCAATCTGATTG 231733 Query 4578 GCTCAAATCATATATCGATAAAAATAC-CGCATGCCGAAAACTA--GCTAAGAATGAGTT 4634 ||| ||| |||||| ||| || || | ||| ||||||| |||| |||| || Sbjct 231732 GCTTAAAA-ATATATTGATCTAACTATACAAATG---AAAACTAAAGCTACTAATGGTTT 231677 Query 4635 CGaaaaaaaCTTTT-ATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATG 4693 || | | | |||| ||||||| | |||||| | || ||||||||||| |||| ||| Sbjct 231676 TGAGAGAGATTTTTCATAAATTCTTAAATAATTCAGTATTTGGAAAGACTCTGGAAAATA 231617 Query 4694 TACGAAAAT 4702 | |||||| Sbjct 231616 TTAGAAAAT 231608 >seq666 Length=474638 Score = 95.1 bits (104), Expect = 2e-15 Identities = 166/238 (70%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 4458 GACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTT 4517 ||||| | | || ||||| |||||||| || || |||||| |||| | ||||||| ||| Sbjct 265451 GACAAATTTATATGATAAGAATAATTACGTGCTTTACTATAGAAATATAAAACAATATTT 265510 Query 4518 AGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTG 4577 | ||||| | || |||||||| || || ||| | || |||||| | || Sbjct 265511 ATCATTAGGAATGAAACTAAAGAAAATTCATAGTGTGTTGTAGTTCAAGCAATTTAATTG 265570 Query 4578 GCTCAAATCATATATCGATAAAAATAC-CGCATGCCGAAAACTAG--CTAAGAATGAGTT 4634 ||| ||| |||||| || ||||| | || | |||||| || ||||| || Sbjct 265571 GCTAAAA--ATATATTCATCTAAATATACAAATTAC---AACTAGAGCTGCTAATGATTT 265625 Query 4635 CGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAAT 4692 ||||| | ||||||||||| |||||| | || ||||||||||| ||||| ||| Sbjct 265626 TGAAAAGGATTTTTATAAATTGTCAAATAATTCAGTATTTGGAAAGACCATGGAAAAT 265683 >seq62 Length=1400222 Score = 95.1 bits (104), Expect = 2e-15 Identities = 176/255 (69%), Gaps = 14/255 (5%) Strand=Plus/Minus Query 4458 GACAACTCTGTACGATAAAAATAATTA--TGTTAT--------TCACTATAAAAATTTGA 4507 ||||||| | || ||||| |||||||| || || ||||||||||| ||||| Sbjct 1269213 GACAACTTTATATGATAAGAATAATTACATGAAATAATTAATATCACTATAAAATTTTGA 1269154 Query 4508 AACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGC 4567 || | | |||| ||||| | || |||||||| || |||| | | || ||| Sbjct 1269153 AATACTATTTATCATTAGGAGTGAAACTAAAGAAAATTCATATAGTGCTAGAGTTCAAGC 1269094 Query 4568 AATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACT--AGCTAA 4625 |||| || ||| | || ||||| ||| || || ||| | || |||| ||||| Sbjct 1269093 AATCTGATTGGTTTAAGAAATATAATGATCTAAGTA-TGCAAG-TGAGAACTAAAGCTAC 1269036 Query 4626 GAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGAT 4685 ||||| || |||||| | |||||||| || | |||||| | || |||||||| || || Sbjct 1269035 TAATGATTTTGAAAAATATTTTTATAAGTTGTTAAATAATTCAGTATTTGGAAATACTAT 1268976 Query 4686 GGAGAATGTACGAAA 4700 ||| ||| | |||| Sbjct 1268975 GGAAAATCTTAGAAA 1268961 >seq104 Length=1168564 Score = 89.7 bits (98), Expect = 1e-13 Identities = 175/255 (69%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 4449 AAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAA 4508 |||| | ||||||||| | || ||||| |||||||| || ||| ||||| |||| |||| Sbjct 1115371 AAAATTAACGACAACTTTATATGATAAGAATAATTACGTGCTTCGCTATAGAAATCTGAA 1115312 Query 4509 ACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCT-AGTCTTGAAATTTGAGC 4567 ||||| |||| ||||| || || ||||| | || ||| | | || ||| Sbjct 1115311 ACAATATTTATCATTAGGAATAAAACTAGAGAAAGTTCATAAGAGTGTCAGAGTTCAAGC 1115252 Query 4568 AATCAGACTGGCTCAAATCATATATCGATAAAAATAC-CGCATGCCGAAAACTAGCTAAG 4626 |||| ||| | | || ||||| ||| ||||| | ||| ||| |||||| Sbjct 1115251 AATCTGACCGAATTAAGAAATATACTGATCTGAATACACAAATGA-GAACTATAGCTACT 1115193 Query 4627 AATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATG 4686 ||||| || | | || ||||||||||| | |||||| | || ||| |||||| ||| Sbjct 1115192 AATGATTTTGTATAATTTTTTTATAAATTGTTAAATAATTCAGTATTTAGAAAGATTATG 1115133 Query 4687 GAGAATGTACGAAAA 4701 | ||| | ||||| Sbjct 1115132 AAAAATATTTGAAAA 1115118 >seq2205 Length=202397 Score = 80.6 bits (88), Expect = 5e-11 Identities = 161/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 4468 TACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGT 4527 || ||||| |||||||| || |||||||||||| | |||| | |||| ||||| Sbjct 35516 TATGATAACAATAATTACGTGCTTCACTATAAAACTCCGAAAGGAAATTTATCATTAGGA 35575 Query 4528 TTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCA 4587 | || |||||||| || | || || | || | ||||| || ||||| ||| | Sbjct 35576 ATGAAACTAAAGAAAATTCA--TTGTGTTAGAGTTCAAACAATCCGATTGGCTTAAAAAA 35633 Query 4588 TATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTT 4647 || ||| |||| | || ||| ||| || || ||||| || |||||| | | | Sbjct 35634 TAGATC--TAAATACACAA-ATGA-GAATTAAAGTTACTAATGATTTTGAAAAATATTCT 35689 Query 4648 TATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701 |||||||| | || ||| | || ||||||||||| ||| ||||| ||||| Sbjct 35690 TATAAATTGTTAAAGAATTCAGTATTTGGAAAGACTGAGGAAAATGTTAGAAAA 35743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97640731831322