Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq238 118 2e-22
seq9467 111 3e-20
seq2284 107 4e-19
seq3121 98.7 2e-16
seq1414 98.7 2e-16
seq649 96.9 7e-16
seq666 95.1 2e-15
seq62 95.1 2e-15
seq104 89.7 1e-13
seq2205 80.6 5e-11
>seq238
Length=807480
Score = 118 bits (130), Expect = 2e-22
Identities = 178/245 (73%), Gaps = 6/245 (2%)
Strand=Plus/Minus
Query 4460 CAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAG 4519
||||| | || |||| ||||| ||| || ||||||||| |||| ||||||||| ||||
Sbjct 262671 CAACTTTTTATGATAGAAATAGTTACGTGCTTCACTATAGAAATCTGAAACAATATTTAT 262612
Query 4520 -ATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGG 4578
||| ||| | | || |||||||| || ||| || | || ||||||| || |||
Sbjct 262611 CATTAAGGATGAAA-CTAAAGAAAATTCATAGAGTGTTAGAGTTCAAGCAATCTGATTGG 262553
Query 4579 CTCAAATCATATATCGATAAAAATAC-CGCATGCCGAAAACTAGCTAAGAATGAGTTCGa 4637
|| || |||||| ||| ||||| | ||| ||| | ||||| ||||| || ||
Sbjct 262552 CTTAAGAAATATATTGATTTAAATAAACAAATGA-GAACAAGAGCTACTAATGATTTGGA 262494
Query 4638 aaaaaaC-TTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTAC 4696
|||| | ||||||||||| | |||||| | || |||||||| || ||||| ||| |
Sbjct 262493 AAAATATATTTTATAAATTGTTAAATAATTCTGTATTTGGAAA-ACTATGGAAAATATTA 262435
Query 4697 GAAAA 4701
|||||
Sbjct 262434 GAAAA 262430
>seq9467
Length=24768
Score = 111 bits (122), Expect = 3e-20
Identities = 175/246 (71%), Gaps = 5/246 (2%)
Strand=Plus/Minus
Query 4459 ACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTA 4518
|||||| | || ||||| ||||| || || ||||||||| |||| |||||| || ||||
Sbjct 6573 ACAACTTTATATGATAATAATAAATACGTACTTCACTATATAAATCTGAAACGATATTTA 6514
Query 4519 GATTTAGGTTTAGTTCTTAA-GAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTG 4577
|||| | || ||| |||||| ||| ||| || | || ||||||| | ||
Sbjct 6513 TCATTAG-TAAAGAAAATAAAGAAAATTCACAGAGTGTTAGAGTTCAAGCAATCTTATTG 6455
Query 4578 GCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGa 4637
||| || |||||| ||| ||||| | | |||| ||||| ||||| || ||
Sbjct 6454 GCTTAAGAAATATATTGATCTAAATATACAAAGGAGAAATAAAGCTATTAATGATTTTGA 6395
Query 4638 aaaaaa-CTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTAC 4696
|||| | |||||||||||| | |||||| | || ||||||||||| ||| ||| |
Sbjct 6394 AAAATATCTTTTATAAATTGTTCAATAATTCAGTATTTGGAAAGAC--TGGCTAATTTTA 6337
Query 4697 GAAAAT 4702
||||||
Sbjct 6336 GAAAAT 6331
>seq2284
Length=200799
Score = 107 bits (118), Expect = 4e-19
Identities = 182/257 (71%), Gaps = 9/257 (4%)
Strand=Plus/Plus
Query 4449 AAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAA 4508
|||| | | ||||||| | || |||||||| |||||||| ||||||||| |||| ||||
Sbjct 188311 AAAATTAATGACAACTTTATATGATAAAAAAAATTATGTGCTTCACTATAGAAATCTGAA 188370
Query 4509 ACAATGTTTAG-ATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGC 4567
||||| |||| ||||| || | | |||||| || | | || | || ||
Sbjct 188371 ACAATATTTATCATTTAAAAATAAACCA-ATGAAAATTCATAGAATATTAGAGTTCAAGA 188429
Query 4568 AATCAGACTGGCTCAAATCATATATCGATAAAAATAC-CGCATGCCGAAAACTAGC--TA 4624
|||| || ||||| || |||||| ||| |||||| | || | ||||| | ||
Sbjct 188430 AATCTGATTGGCTTAAGAAATATATTGATCTAAATACACAAATA---AGAACTAACGTTA 188486
Query 4625 AGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGA 4684
||||| || |||||| | ||||||||| | | |||||| | || ||||||||||| |
Sbjct 188487 CTAATGATTTTGAAAAATA-TTTTATAAACTGTTAAATAATTCAGTATTTGGAAAGACTA 188545
Query 4685 TGGAGAATGTACGAAAA 4701
|| | ||| | |||||
Sbjct 188546 TGAAAAATATTAGAAAA 188562
>seq3121
Length=144607
Score = 98.7 bits (108), Expect = 2e-16
Identities = 177/256 (69%), Gaps = 7/256 (3%)
Strand=Plus/Plus
Query 4449 AAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAA 4508
|||| | | || |||| |||| || || |||||||| || || |||||| |||| ||||
Sbjct 48963 AAAATTAATGAGAACTTTGTATGACAAGAATAATTACGTGCTTAACTATAGAAATCTGAA 49022
Query 4509 ACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCA 4568
||||| |||| |||| || || |||||||| || || || | || ||||
Sbjct 49023 ACAATATTTATCATTAGAAATAAA-CTAAAGAAAATTCATACAGAGTTAGAGTTCAAGCA 49081
Query 4569 ATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAA---CTAGCTAA 4625
||| || ||||| || || ||| ||| |||||| || ||| |||||||
Sbjct 49082 ATCTGATTGGCTTAAGCAATTTATTGATCTAAATAC---ATAAATTAAAGCTCTAGCTAC 49138
Query 4626 GAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGAT 4685
||| | || |||| | | ||||||||||| | |||||| | || |||| ||| || ||
Sbjct 49139 TAATAAATTTGAAACATATTTTTATAAATTGTTAAATAATTCTGTATTTGCAAATACTAT 49198
Query 4686 GGAGAATGTACGAAAA 4701
||| | | | |||||
Sbjct 49199 GGAAACTATTAGAAAA 49214
>seq1414
Length=285139
Score = 98.7 bits (108), Expect = 2e-16
Identities = 180/263 (68%), Gaps = 2/263 (1%)
Strand=Plus/Plus
Query 4441 AAGCAACAAAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAA 4500
||| || || || | | ||||||| | | ||| || ||||| || ||| ||||| |
Sbjct 167810 AAGAAAAAACAATTAATGACAACTTTACATAGTAAGAAAAATTACGTGCTTCGCTATAGA 167869
Query 4501 AATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAA 4560
||| |||||||||||||| | || || || |||||||| || | | || ||
Sbjct 167870 AATCTGAAACAATGTTTATTATCAGAAATAAAACTGAAGAAAATTCATTGAATGTTAGAA 167929
Query 4561 TTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTA 4620
||| | ||||| | ||||| || |||||| || |||||| || ||| |
Sbjct 167930 TTTAAACAATCTCATTGGCTTAAGAAATATATTGACCTAAATACACAATTGAGAACCAGA 167989
Query 4621 GCTAAGAATGAGTTCGaaaaaaa--CTTTTATAAATTAATGAATAATGCGGTTTTTGGAA 4678
|||| |||| || ||||| | ||||||||||| | |||||| | || |||||||
Sbjct 167990 GCTACTAATGGTTTTAAAAAATATTTTTTTATAAATTGTTAAATAATTCTGTATTTGGAA 168049
Query 4679 AGACGATGGAGAATGTACGAAAA 4701
|||| ||||| ||| | |||||
Sbjct 168050 AGACTATGGAAAATATTAGAAAA 168072
Score = 87.8 bits (96), Expect = 4e-13
Identities = 158/227 (70%), Gaps = 8/227 (4%)
Strand=Plus/Minus
Query 4480 AATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAG 4539
|||||||| ||||||||| |||| |||||||||||||| | ||| || || |||
Sbjct 243155 AATTATGTGCTTCACTATAGAAATCTGAAACAATGTTTATTATCAGGAATAAAACTGAAG 243096
Query 4540 AAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAA 4599
||||| || | | || ||||| | ||||| | ||| | || ||| || | |
Sbjct 243095 AAAATTCATAGAATGTTAGAATTTAAACAATCTCATTGGTTTAAGAAATACATTTACCTA 243036
Query 4600 AATAC-CGCATGCCGAAAACT--AGCTAAGAATGAGTTCGaaaaaaaCTTTT--ATAAAT 4654
||||| | || || |||| |||| |||| || |||||| | |||| ||||||
Sbjct 243035 AATACACAAAT---GAGAACTAGAGCTGCTAATGGTTTTGAAAAATATTTTTTCATAAAT 242979
Query 4655 TAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701
| | |||||| | || ||||| ||||| ||||| ||| | |||||
Sbjct 242978 TGTTAAATAATTCCGTATTTGGGAAGACTATGGAAAATATTAGAAAA 242932
>seq649
Length=484115
Score = 96.9 bits (106), Expect = 7e-16
Identities = 174/249 (70%), Gaps = 8/249 (3%)
Strand=Plus/Minus
Query 4458 GACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTT 4517
||||||| | || ||||| ||||| ||| | ||||||| | ||||| ||| ||| |||
Sbjct 231852 GACAACTTTATATGATAAGAATAACTATATGCTTCACTACAGTAATTTAAAATAATATTT 231793
Query 4518 AGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTG 4577
| ||| | || || |||||||| | ||| || | || ||||||| || ||
Sbjct 231792 ACCATTACGAATAAAACTAAAGAAAATTAATGGAGTGTTAGAGTTCAAGCAATCTGATTG 231733
Query 4578 GCTCAAATCATATATCGATAAAAATAC-CGCATGCCGAAAACTA--GCTAAGAATGAGTT 4634
||| ||| |||||| ||| || || | ||| ||||||| |||| |||| ||
Sbjct 231732 GCTTAAAA-ATATATTGATCTAACTATACAAATG---AAAACTAAAGCTACTAATGGTTT 231677
Query 4635 CGaaaaaaaCTTTT-ATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATG 4693
|| | | | |||| ||||||| | |||||| | || ||||||||||| |||| |||
Sbjct 231676 TGAGAGAGATTTTTCATAAATTCTTAAATAATTCAGTATTTGGAAAGACTCTGGAAAATA 231617
Query 4694 TACGAAAAT 4702
| ||||||
Sbjct 231616 TTAGAAAAT 231608
>seq666
Length=474638
Score = 95.1 bits (104), Expect = 2e-15
Identities = 166/238 (70%), Gaps = 8/238 (3%)
Strand=Plus/Plus
Query 4458 GACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTT 4517
||||| | | || ||||| |||||||| || || |||||| |||| | ||||||| |||
Sbjct 265451 GACAAATTTATATGATAAGAATAATTACGTGCTTTACTATAGAAATATAAAACAATATTT 265510
Query 4518 AGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTG 4577
| ||||| | || |||||||| || || ||| | || |||||| | ||
Sbjct 265511 ATCATTAGGAATGAAACTAAAGAAAATTCATAGTGTGTTGTAGTTCAAGCAATTTAATTG 265570
Query 4578 GCTCAAATCATATATCGATAAAAATAC-CGCATGCCGAAAACTAG--CTAAGAATGAGTT 4634
||| ||| |||||| || ||||| | || | |||||| || ||||| ||
Sbjct 265571 GCTAAAA--ATATATTCATCTAAATATACAAATTAC---AACTAGAGCTGCTAATGATTT 265625
Query 4635 CGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAAT 4692
||||| | ||||||||||| |||||| | || ||||||||||| ||||| |||
Sbjct 265626 TGAAAAGGATTTTTATAAATTGTCAAATAATTCAGTATTTGGAAAGACCATGGAAAAT 265683
>seq62
Length=1400222
Score = 95.1 bits (104), Expect = 2e-15
Identities = 176/255 (69%), Gaps = 14/255 (5%)
Strand=Plus/Minus
Query 4458 GACAACTCTGTACGATAAAAATAATTA--TGTTAT--------TCACTATAAAAATTTGA 4507
||||||| | || ||||| |||||||| || || ||||||||||| |||||
Sbjct 1269213 GACAACTTTATATGATAAGAATAATTACATGAAATAATTAATATCACTATAAAATTTTGA 1269154
Query 4508 AACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGC 4567
|| | | |||| ||||| | || |||||||| || |||| | | || |||
Sbjct 1269153 AATACTATTTATCATTAGGAGTGAAACTAAAGAAAATTCATATAGTGCTAGAGTTCAAGC 1269094
Query 4568 AATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACT--AGCTAA 4625
|||| || ||| | || ||||| ||| || || ||| | || |||| |||||
Sbjct 1269093 AATCTGATTGGTTTAAGAAATATAATGATCTAAGTA-TGCAAG-TGAGAACTAAAGCTAC 1269036
Query 4626 GAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGAT 4685
||||| || |||||| | |||||||| || | |||||| | || |||||||| || ||
Sbjct 1269035 TAATGATTTTGAAAAATATTTTTATAAGTTGTTAAATAATTCAGTATTTGGAAATACTAT 1268976
Query 4686 GGAGAATGTACGAAA 4700
||| ||| | ||||
Sbjct 1268975 GGAAAATCTTAGAAA 1268961
>seq104
Length=1168564
Score = 89.7 bits (98), Expect = 1e-13
Identities = 175/255 (69%), Gaps = 3/255 (1%)
Strand=Plus/Minus
Query 4449 AAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAA 4508
|||| | ||||||||| | || ||||| |||||||| || ||| ||||| |||| ||||
Sbjct 1115371 AAAATTAACGACAACTTTATATGATAAGAATAATTACGTGCTTCGCTATAGAAATCTGAA 1115312
Query 4509 ACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCT-AGTCTTGAAATTTGAGC 4567
||||| |||| ||||| || || ||||| | || ||| | | || |||
Sbjct 1115311 ACAATATTTATCATTAGGAATAAAACTAGAGAAAGTTCATAAGAGTGTCAGAGTTCAAGC 1115252
Query 4568 AATCAGACTGGCTCAAATCATATATCGATAAAAATAC-CGCATGCCGAAAACTAGCTAAG 4626
|||| ||| | | || ||||| ||| ||||| | ||| ||| ||||||
Sbjct 1115251 AATCTGACCGAATTAAGAAATATACTGATCTGAATACACAAATGA-GAACTATAGCTACT 1115193
Query 4627 AATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATG 4686
||||| || | | || ||||||||||| | |||||| | || ||| |||||| |||
Sbjct 1115192 AATGATTTTGTATAATTTTTTTATAAATTGTTAAATAATTCAGTATTTAGAAAGATTATG 1115133
Query 4687 GAGAATGTACGAAAA 4701
| ||| | |||||
Sbjct 1115132 AAAAATATTTGAAAA 1115118
>seq2205
Length=202397
Score = 80.6 bits (88), Expect = 5e-11
Identities = 161/234 (69%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 4468 TACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGT 4527
|| ||||| |||||||| || |||||||||||| | |||| | |||| |||||
Sbjct 35516 TATGATAACAATAATTACGTGCTTCACTATAAAACTCCGAAAGGAAATTTATCATTAGGA 35575
Query 4528 TTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCA 4587
| || |||||||| || | || || | || | ||||| || ||||| ||| |
Sbjct 35576 ATGAAACTAAAGAAAATTCA--TTGTGTTAGAGTTCAAACAATCCGATTGGCTTAAAAAA 35633
Query 4588 TATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTT 4647
|| ||| |||| | || ||| ||| || || ||||| || |||||| | | |
Sbjct 35634 TAGATC--TAAATACACAA-ATGA-GAATTAAAGTTACTAATGATTTTGAAAAATATTCT 35689
Query 4648 TATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701
|||||||| | || ||| | || ||||||||||| ||| ||||| |||||
Sbjct 35690 TATAAATTGTTAAAGAATTCAGTATTTGGAAAGACTGAGGAAAATGTTAGAAAA 35743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97640731831322
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