Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq994 172 6e-38 seq5418 109 6e-19 seq6658 102 9e-17 seq3845 89.7 5e-13 >seq994 Length=361151 Score = 172 bits (190), Expect = 6e-38 Identities = 338/495 (68%), Gaps = 5/495 (1%) Strand=Plus/Minus Query 132434 CCTGGAAAAAGAGGTTGGTTGAAGATaaaaaaaGATTATTTAGAGAATGGGTCTATGGCA 132493 || |||||| || |||| | || || ||||||||||| |||| |||| | |||||| Sbjct 158595 CCAGGAAAACGACATTGGCTAAAAATTAAAAAAGATTACCTAGAAGATGGAGCAATGGCA 158536 Query 132494 GATTCCGCAGATCTTGTGGTATTAGGTTCTTATTATGGAAAAGGATCAAAGGGAGGAATA 132553 ||||| || |||||||| || | || | |||| ||||| ||| || || ||||| Sbjct 158535 GATTCAGCTGATCTTGTTGTTCTTGGAGCATATTTTGGAACTGGAAATAAAGGTGGAATG 158476 Query 132554 CAATCAATATTTTTAATGGGATGTTATGATTCAGATCGTATGATTTGGAAGACTGTAACA 132613 ||||||||| | ||||||||||| ||| | | | ||| | ||| ||||| ||| Sbjct 158475 ATGTCAATATTTCTGATGGGATGTTACGATCCTGCTAGTAAAAAATGGTGTACTGTTACA 158416 Query 132614 AAA-TG--TTCTGGTCATGACGATAAAACGCTTCAACAATTGCAAGAAGATATGGAATTA 132670 ||| || | || ||||| ||| || || || || | ||| || |||| | Sbjct 158415 AAAGTGCATGGAGGACATGATGATGCTACTTTTGAAAAACTCCAAACTGAGCTGGACATG 158356 Query 132671 ATAAAAATAAGCCGCGAACCTGATAAAATTCCAAAATGGTTATCCGTTAATAAAA-TATA 132729 | |||||| || || || |||| |||| ||| | || ||||||| | | Sbjct 158355 AAAAAAATTAGGAAGGACCCAAGTAAAGTTCCTGCTTGGCTGAAAGTGAATAAAACTCTC 158296 Query 132730 TTATCCTGATTTTGTAGTGAAGGATCCTAGATCGGCACCCGTTTGGGAAATTGTGGGATC 132789 | |||||||||||| | || ||||||| | | || || ||||||||||| ||| | Sbjct 158295 AT-TCCTGATTTTGTTGCTAATGATCCTAAAAACTCCCCAGTATGGGAAATTGTTGGAGC 158237 Query 132790 CGGATTTACAAAATCCCAATATCATACTGCCGATGGAATTTCTATCAGATTTCCAAGATG 132849 | |||||||||| | || ||||| ||| ||||||| ||||| | ||||||||| Sbjct 158236 AGAATTTACAAAAGCAGAAATCCATACAGCCAATGGAATCTCTATTCGTTTTCCAAGAGT 158177 Query 132850 TCAAAGAATCAGAAATGATAAAAATTGGATTTCTGCTACAAATTTAAATCAACTAAGGGA 132909 | || |||| || |||| |||| |||| || ||||| ||| | || || || Sbjct 158176 TGCAAAAATCCGAGATGACAAAACATGGAAAGAAGCCACAAACTTACAGGAATTACAAGA 158117 Query 132910 ATTATATAAAAAATC 132924 ||| | |||||| || Sbjct 158116 ATTGTTTAAAAAGTC 158102 >seq5418 Length=65370 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 21865 GTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATA 21924 ||||||||| ||||| |||||||| || ||||| || ||||| | || ||||| | Sbjct 6920 GTTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTG 6861 Query 21925 TCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTC 21984 || ||| | |||| |||| | || ||| || ||| ||| || ||||| || |||||||| Sbjct 6860 TCTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTC 6801 Query 21985 AGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTAT 22044 | ||||||||| ||| ||| | || ||||| |||||| || ||| || Sbjct 6800 TGCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAAT 6741 Query 22045 TGGAAATATTACAAACCT 22062 ||||| ||||||||||| Sbjct 6740 GGGAAACATTACAAACCT 6723 Score = 100 bits (110), Expect = 3e-16 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 21124 TATTTAAAAATCAGCATCTAATGAGAAAAC--ATTATCTTCtttttttGACATAATTCCC 21181 ||||||||||||||| || | ||| |||| || ||||| ||| | ||| | ||| Sbjct 9218 TATTTAAAAATCAGCGTCAA--GAGTAAACTTATGCTCTTCCCGTTTAGCCATGACTCCA 9161 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || ||||| |||| ||| | ||||| || || || ||||| |||||||| || ||| Sbjct 9160 CACTTCTGATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATA 9101 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||||||||||||||||||| Sbjct 9100 TGTTCCATAAAATCAAATGGATTTTC 9075 >seq6658 Length=47451 Score = 102 bits (112), Expect = 9e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 21861 CCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAA 21920 ||||||| || | |||||||||||||| || ||||| || ||||| | | ||||||| Sbjct 26426 CCAAGTTCTCCATCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAA 26485 Query 21921 AATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTT 21980 | | || ||| | | | |||| || ||||||||| | ||||| || || || |||| Sbjct 26486 AGTGTCTTTCTTCAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTT 26545 Query 21981 CTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATA 22040 |||||| ||||| ||| ||| || || || |||||| ||| ||||| || Sbjct 26546 CTTCAGCAGTCCAGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACT 26605 Query 22041 TTATTGGAAATATTACAAA 22059 ||||| || |||||||| Sbjct 26606 CAATTGGTAAAATTACAAA 26624 >seq3845 Length=110360 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/144 (75%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCttt---ttttGACATAATTCCCAT 21183 |||||| ||||||||||||| |||| || | ||||| | | | ||| | || Sbjct 75609 TTAAAAGTCAGCATCTAATGT--AAAC-TTGTGTTCTTCACGTCTCGCCATGACCCCACA 75553 Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| || | || | ||||| ||||| |||||||| |||||||| ||||| Sbjct 75552 TTTCTGATACTCGCCCACCTTCTTTTCAAAAAAGTTTGTCTTGCCTTCCAAAGATATGTG 75493 Query 21244 TTCCATAAAATCAAATGGATTTTC 21267 ||||||||||||||| |||||||| Sbjct 75492 TTCCATAAAATCAAAAGGATTTTC 75469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529993982173320