Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq3845 145 9e-30
seq994 140 4e-28
seq5418 132 6e-26
seq6658 116 5e-21
seq1632 109 7e-19
>seq3845
Length=110360
Score = 145 bits (160), Expect = 9e-30
Identities = 170/227 (75%), Gaps = 7/227 (3%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| |||||||| || ||||| || || || | || ||||| || || | ||| |
Sbjct 72985 CCTCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCT 72926
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
||||||| ||||| || || ||||| ||||||||||| || || || || ||||||||||
Sbjct 72925 TAAGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGG 72866
Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGT--CATG---TATCCACTTTTGAGCCCAATC 33500
| | || || ||| ||| || | ||||| ||| |||||| || ||||||||||
Sbjct 72865 CTACAACTCGCTCACCAAAA--GTAGCTGTAGGATGACCTATCCAGTTGAGAGCCCAATC 72808
Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547
|| ||||| || |||||||||| ||||| || ||||| || ||||
Sbjct 72807 TGCTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGAT 72761
Score = 114 bits (126), Expect = 2e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 33690 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33749
||||||||| || || || ||||| || ||||| || |||| | || ||||| |
Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976
Query 33750 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 33809
|| ||| ||| | ||| || | ||| | | | ||||| || | ||| ||||||||
Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTC 70916
Query 33810 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGAT 33869
|| ||||| ||||| |||||||| || |||||||| | ||||||||| |||| ||
Sbjct 70915 TACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAAT 70856
Query 33870 TGGGAAAATAACAAATCT 33887
|| ||||||||||||||
Sbjct 70855 GGGAAAAATAACAAATCT 70838
>seq994
Length=361151
Score = 140 bits (154), Expect = 4e-28
Identities = 660/1030 (64%), Gaps = 50/1030 (5%)
Strand=Plus/Minus
Query 156573 CCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTTTAAAAAATTTCCATCAGGA 156632
||||||||||| ||| | || |||||| | | || || || ||||||||| |||
Sbjct 159150 CCCATGTTAGCTGAACCTTGCAGTTCTGTGGAATATGCCTTCAAGAAATTTCCAAGTGGA 159091
Query 156633 ATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTCATAAAAATAATAACGAG 156692
|||| ||| ||| | || || ||||||||||| ||||| || || ||| || || |
Sbjct 159090 ATGTATGCTGAAATAAAGTATGATGGTGAAAGGGTACAGGTCCACAAACATGGAGACAAA 159031
Query 156693 TTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAAGTGGATTATCTCAAA 156752
||| | |||||| ||| | ||||| || | |||| ||| | |||| |||
Sbjct 159030 TTTAATTATTTTAGTCGAAGTTTAAAACCCGTGATGCCTCACAAAATTTCACATCTGAAA 158971
Query 156753 GAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTGGATTCTGAAATTGTT 156812
||||||||||| ||||| ||| |||||| | | || | ||| |||| | |
Sbjct 158970 GAATACATACCTAAAGCTTTTCCTCAAGCTAGTGATTTGATACTTGATAGTGAAGTACTA 158911
Query 156813 CTTGTAGACGAACATAATG---TACCGCTCCCGTTTGGAAGTTTAGGAATACACAAAAAG 156869
||||||||| || | || || || || ||||||| |||||| | || |||||
Sbjct 158910 CTTGTAGACACTCAAACTGGGAAGCCACTTCCATTTGGAACATTAGGAGTTCATAAAAAA 158851
Query 156870 AAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTGTTTGTACTTTGATGGA 156929
| | || | | | |||||||||| || |||||||| | ||| | |||||
Sbjct 158850 GCTGCTTTCAAGGATGCAAGTGTGTGTTTGTTTGTCTTTGACTGCATTCACTATAATGGA 158791
Query 156930 TTCGATATGACGGACATTCCATTGTACGA---ACG-AAGATCTTTTCTCA-AAGATGTTA 156984
|| | | ||| ||| || | || ||| || || | ||||| || ||| |
Sbjct 158790 GAAAATCTAATGGAGCGTCCTTTATCTGAGAGACGCAACATTCTGTCTCAGAACATG--A 158733
Query 156985 TGGTTGAAATACCCAATAGAATAGTATTCTCAGAGTTGACGAATAT--TAG--TAACGAG 157040
|| || || ||| || | || ||||| ||| | | | ||| || ||
Sbjct 158732 TG---GAGATTAAAAATCACATCATGTTTTCAGAAATGAAGCTTGTGATAGAAAAAGAAG 158676
Query 157041 T-CTCAGTTAACTGACGTATTGGATGATGCACTAACGAGAAAATTAGAAGGATTGGTCTT 157099
| || | || || ||| || || ||| || |||||||| | || |
Sbjct 158675 TACTAAAAAAAATG----ATTCAATCTGCCATTAATCAG-GGTTTAGAAGGGCTAGTTCT 158621
Query 157100 AAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTAAAAATAAAGCGAGA 157159
|||| | || || || || ||||| || ||| ||||||| || |||
Sbjct 158620 GAAAGGCACAAACAACACGTATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGA 158561
Query 157160 CTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCTTACTA 157219
|| | | || || | ||||||||||| || ||| | || || || || || || |
Sbjct 158560 TTACCTAGAAGATGGAGCAATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTT 158501
Query 157220 TGGTAAAGGAGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGTTGTTACGACGATGA 157279
||| | ||| || ||||| || ||| || | ||||| ||||| |||||||| ||
Sbjct 158500 TGGAACTGGAAATAAAGGTGGAATGATGTCAATATTTCTGATGGGATGTTACGATCCTG- 158442
Query 157280 ATCCGGT---AAATGGAAGACGGTTAC-CAAGTG--TTCAGGACACGATGATAATACGTT 157333
| || |||||| || ||||| ||||| | |||||| |||||| |||
Sbjct 158441 --CTAGTAAAAAATGGTGTACTGTTACAAAAGTGCATGGAGGACATGATGATGCTAC--- 158387
Query 157334 AAGGGTTTTGCAAGA--CCAA--TTAAC----GATGGTTAAAATTAACAAGGATCCCaaa 157385
||||| || | |||| | | | ||| ||||||| ||||| || |
Sbjct 158386 -----TTTTGAAAAACTCCAAACTGAGCTGGACATGAAAAAAATTAGGAAGGACCCAAGT 158332
Query 157386 aaaaTTCCAGAGTGGTTGGTAGTTAATAAAA-TCTATATTCCCGATTTTGTAGTAGAGGA 157444
||| |||| | ||| || ||| ||||||| ||| ||||| |||||||| | | ||
Sbjct 158331 AAAGTTCCTGCTTGGCTGAAAGTGAATAAAACTCT-CATTCCTGATTTTGTTGCTAATGA 158273
Query 157445 TCCGAAACAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAAGTCCCA 157504
||| ||| | || | ||||||||||| |||||||| |||||| | | |||
Sbjct 158272 TCCTAAAAACTCCCCAGTATGGGAAATTGTTGGAGCAGAATTTACAAAAGCAGAAATCCA 158213
Query 157505 TACCGCAAATGGAATATCCATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAAC 157564
||| || |||||||| || ||| | ||||| ||| || | | || |||| || |||||
Sbjct 158212 TACAGCCAATGGAATCTCTATTCGTTTTCCAAGAGTTGCAAAAATCCGAGATGACAAAAC 158153
Query 157565 GTGGAAAGAA 157574
|||||||||
Sbjct 158152 ATGGAAAGAA 158143
>seq5418
Length=65370
Score = 132 bits (146), Expect = 6e-26
Identities = 166/225 (74%), Gaps = 7/225 (3%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || || || || ||| ||||| || ||||| |||||||||||||
Sbjct 8159 CCTCATCTCTGCTGATCAGCTCATTACTAAAAGTGAGACCAGGCATCAGGCCACGCTTTT 8100
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || || ||||| || || ||||| || || ||||||||||| |||||||| |
Sbjct 8099 TTAGCCAGAAAATTGAAGCAAAAGACCCAGAGAAAAATATTCCTTCTACAGCAGCAAAAG 8040
Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGT--CATG---TATCCACTTTTGAGCCCAATC 33500
| | || || ||| || || | ||||| ||| ||||| | ||||||| ||
Sbjct 8039 CCACAACTCGCTCACC--AAATGTTGCTGTAGGATGGCTAATCCAAGTGAGAGCCCAGTC 7982
Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545
|| ||||| |||||||| |||| || || || ||||| || ||
Sbjct 7981 TGCTTTCTTCTTTACACATGGCAAGGTCTCAATTGCATTGAAAAG 7937
Score = 116 bits (128), Expect = 5e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 33691 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33750
|||||||| ||||| || ||||| || ||||| || ||||| ||||| ||||| | |
Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860
Query 33751 TTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCC 33810
|||| || | ||| | | ||| |||| | ||| || |||| || ||||||||
Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800
Query 33811 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATT 33870
||||||||||||| ||||||||| | || ||||| | ||||||||| |||| ||
Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740
Query 33871 GGGAAAATAACAAATCT 33887
|| || || ||||| ||
Sbjct 6739 GGAAACATTACAAACCT 6723
Score = 82.4 bits (90), Expect = 9e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 33554 TTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613
||||||| ||| || | || || || || || | |||||||||||| || |||| |
Sbjct 7532 TTTCATTTGGATCCTTGATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACAT 7473
Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668
|||||||||| || || || || || ||||| ||||| ||||| | ||| |||||
Sbjct 7472 TTTCAATGGCAATTTGGAAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTC 7418
Score = 82.4 bits (90), Expect = 9e-11
Identities = 102/139 (73%), Gaps = 3/139 (2%)
Strand=Plus/Minus
Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC---TTGAGACATAACTCCCATTT 33013
||||||| ||| | || | || ||| | || ||||| || || ||| ||||| |
Sbjct 9216 TTTAAAAATCAGCGTCAAGAGTAAACTTATGCTCTTCCCGTTTAGCCATGACTCCACACT 9157
Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073
| || ||||||||||| ||||| || || || || || |||||||| || |||| ||
Sbjct 9156 TCTGATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGTT 9097
Query 33074 CCATGAAATCAAACGGATT 33092
|||| |||||||| |||||
Sbjct 9096 CCATAAAATCAAATGGATT 9078
>seq6658
Length=47451
Score = 116 bits (128), Expect = 5e-21
Identities = 161/223 (72%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || |||||||| || || | || ||||| | || | ||| |
Sbjct 24834 CCTCATCTCTGCTTATCAGTTCGTTACTGAAAGTCAAGCCAGGCATCATTCCCCTCTTCT 24893
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| | ||| || || || || || || || ||||||||||| |||||||| ||||| ||||
Sbjct 24894 TTAACCAGAAGATAGAGGCAAAGGAACCCGAAAAGAAGATCCCTTCTACAGCAGCGAAGG 24953
Query 33446 CAATAAGTCTCTCTCCATAACCGGC-GC--TGTCATGTATCCACTTTTGAGCCCAATCGG 33502
| | ||||| ||| | | ||| || ||| || ||||| || | |||||||| |
Sbjct 24954 CTACAAGTCGCTCAGGAAATGGGGCAGCATTGTTATCAATCCAGTTCAGGGCCCAATCAG 25013
Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545
||||||| || ||||| || | ||||| || ||||| |||||
Sbjct 25014 CCTTCTTCTTAACACAGGGTAAGGTTTCAATAGCATTGAAGAG 25056
Score = 107 bits (118), Expect = 2e-18
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624
|| || ||||||||||| ||||| ||||| |||||||| ||||| ||||| || | ||
Sbjct 25523 TCCTTCACATAAGTATCTATCAAGAGACTGTACATTTCAGAATGTATGTTCTCCACTGCA 25582
Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGT 33681
|||||||| | ||||||||| | ||| ||||||||||| || || ||| ||||||
Sbjct 25583 ATCTGAAAGCTGTAGAAACAACGAGCTTCGGTAATCTGGACCTCCTGACAGAATCGT 25639
>seq1632
Length=265768
Score = 109 bits (120), Expect = 7e-19
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636
||||| || ||||| || |||||||| || |||||| || ||||||| || || |||
Sbjct 21155 TATGTTTCATATGGCCCCAACTTCTCAGATAATTCACAGCTTGCCTCTACAGCTCCATAA 21214
Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696
||||| || || || |||| | ||||| ||| ||||| || ||||||||||||
Sbjct 21215 TAAATAGTCTCAAAAATCTGAATGTTTAGTAGTTGGGCTTCTTTACTGTCAAATGGATAA 21274
Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756
| ||||| || || || |||| || ||||||||||| || || |||| |||| |
Sbjct 21275 CGCATAAGAATGAAGGCATCTGCTAGCCCCTGAACACCAATGCCAATTGGTCGATGTTTT 21334
Query 62757 TTATTAGA 62764
|| || ||
Sbjct 21335 TTGTTTGA 21342
Score = 96.9 bits (106), Expect = 4e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121
|||| || || |||||||| || || ||||| |||| | || || ||||| || ||||
Sbjct 17145 TCCACCCATAGAAATGCATGCTGGTCAGTTTTCCATAATTGGGGTCAGCTATGTGAATAT 17204
Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181
||| ||| ||||| ||||| || || ||||| | ||| || |||| || ||||| |
Sbjct 17205 TCAGAGACTGACTCTGATCAATAAATGCTCCTCGGTCAGCTCCCATCTTGATGATAAGCC 17264
Query 62182 TTTGTGGAATTTCCCAAATAGTT 62204
||| ||||||||||| | ||||
Sbjct 17265 GTTGGGGAATTTCCCACACAGTT 17287
Score = 96.9 bits (106), Expect = 4e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 62329 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62388
||||| |||||||||||| || || | || | || | ||| ||||| || || || |
Sbjct 18440 GATTACTTACTTGAAATTCACCTGAGAGGACACGACGGGAGTATATATTGCTTGTGTAAG 18499
Query 62389 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448
|||| | |||||||| ||||| | ||| || |||||||| ||||| ||||||||||| |
Sbjct 18500 GTTCAATAGACTCATTGTTTCCAAGAATCTGGGCAGTTGAAGCAGTTGGCATAGGTGCAA 18559
Query 62449 CCAATAAACTATTTCT 62464
| ||| || |||||
Sbjct 18560 TGAGTAAGCTGTTTCT 18575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620713988795880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |