Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq5467 125 7e-24 seq629 122 8e-23 seq1267 116 4e-21 seq4435 96.9 3e-15 seq1156 91.5 1e-13 >seq5467 Length=66102 Score = 125 bits (138), Expect = 7e-24 Identities = 176/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||||||| | ||||| | || | ||| ||| Sbjct 29819 ATGCAGATTTTTGTCAAGACCCTCACTGGAAAAACTATCACTTTGGAGGTGGAACCAAGT 29760 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || ||| |||||| ||||||||||| || || || || ||| Sbjct 29759 GACACAATTGAGAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCTGACCAA 29700 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| |||| | || ||||| || || |||| | | | | || ||||| Sbjct 29699 CAGAGACTGATTTTTGCAGGTAAACAGCTGGAGGATGGACGGACCCTTTCTGATTATAAT 29640 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAAATATGATTA 27008 ||||| |||||||||||| | ||||| ||||| ||||| | || |||| || || | || Sbjct 29639 ATTCAGAAAGAATCTACTTTGCATCTTGTCCTAAGACTGCGTGGTGGAACAAAATTAGTA 29580 Query 27009 GTTTGAA 27015 | ||||| Sbjct 29579 GATTGAA 29573 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| ||||||| ||| | || || | ||| ||||| | | Sbjct 30047 ATGCAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTCTGGAAGTAGAACCTAGT 29988 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || ||| ||| ||| ||||||||||| || || || || || Sbjct 29987 GATACTATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAG 29928 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||||| | || |||||||| || |||| | | | | ||||| || Sbjct 29927 CAAAGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGACCCTTTCTGACTACAAT 29868 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| ||||| ||| | |||||||| ||| || | |||||||| Sbjct 29867 ATCCAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGAGGAGG 29821 >seq629 Length=499154 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | ||||||||| | ||||| | ||| | || ||| Sbjct 5738 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 5797 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || ||| |||||| ||||| ||||| || || || || ||| Sbjct 5798 GACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAA 5857 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | || |||||||| || |||| | ||| | ||||| ||| Sbjct 5858 CAGAGACTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGAACACTTTCTGACTACAAC 5917 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||||||||||||| | |||||||| | ||| || || ||||| Sbjct 5918 ATCCAAAAAGAATCTACCCTACATCTGGTTCCGAGGCTGAGGGGAGG 5964 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | ||||||||| | ||||| | ||| | || ||| Sbjct 5966 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 6025 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || ||| |||||| ||||| ||||| || || || || ||| Sbjct 6026 GACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAA 6085 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | || |||||||| || |||| | | || || || ||| Sbjct 6086 CAGAGACTGATCTTTGCTGGTAAACAACTAGAGGATGGACGTACACTCTCAGATTACAAC 6145 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 |||||||| || |||||| | ||||| ||| | ||||| Sbjct 6146 ATTCAAAAGGAGTCTACTTTGCATCTTGTCTTAAGACT 6183 >seq1267 Length=316221 Score = 116 bits (128), Expect = 4e-21 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| |||| |||||| | ||||| | ||| | || | | Sbjct 206657 ATGCAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGAGCCTAGT 206598 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| || ||| ||||||||||| || || || || ||| Sbjct 206597 GACACCATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAA 206538 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACTATA 26946 || ||| | |||| | || ||||| | || |||| | | | ||||| |||||| Sbjct 206537 CAGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAG--ACTATA 206480 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 |||||||||||||||||||| | ||||| || ||||||| Sbjct 206479 ACATTCAAAAAGAATCTACTCTTCATCTAGTGTTGAGACT 206440 >seq4435 Length=89394 Score = 96.9 bits (106), Expect = 3e-15 Identities = 170/246 (69%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 26752 CTTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCA 26811 |||||| || | |||||||| | |||||||| || |||| || || | ||||| Sbjct 35800 CTTTTTCGTAGATTAAAATGCAGATATTTGTAAAGACGCTAACAGGCAAGACAATCACTT 35859 Query 26812 TCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAG 26871 | || |||| | | ||||||||| ||| | |||||| || || || || || | Sbjct 35860 TGGAGGTAGAGCCTAGCGACACCATAGAGAACGTCAAAGCTAAAATCCAAGATAAGGAGG 35919 Query 26872 GGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 26931 | || || || |||||||||||| | || | | || || || | ||||||| | | Sbjct 35920 GAATTCCACCTGATCAACAAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTA 35979 Query 26932 AC--GTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAG 26989 | |||| || || || ||||| || || |||||| | |||||||| ||||||||| | Sbjct 35980 CCTTGTCA--GATTACAATATTCAGAAGGAGTCTACTTTACATCTGGTTCTGAGACTTCG 36037 Query 26990 AGGAGG 26995 || || Sbjct 36038 TGGTGG 36043 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||| | ||||||||| | || || | ||| | ||| | | Sbjct 36045 ATGCAAATCTTTGTTAAAACACTTACTGGAAAAACAATTACTCTGGAAGTTGAACCCAGT 36104 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || ||| || ||| || |||||||| || || || |||||| Sbjct 36105 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 36164 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | || ||||| | ||||||| | | | | | || ||||| Sbjct 36165 CAAAGATTGATTTTTGCAGGGAAACAGTTGGAAGATGGTCGCACCTTATCAGATTATAAT 36224 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAG 26983 ||||| || || || || | || |||| || || Sbjct 36225 ATTCAGAAGGAGTCCACACTTCACTTGGTACTTAG 36259 >seq1156 Length=327524 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||||||||| | ||||||||||| || || ||||| | || ||| | ||| |||| | Sbjct 17488 CAAAATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAGAGCC 17547 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||||| || ||| | || || ||| || || |||||||| || || || || Sbjct 17548 TAGTGACACTATTGAGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGA 17607 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-AC-GTCAGCGAC 26942 |||||| ||| | || | | || || || || ||||||| |||| || ||| || Sbjct 17608 TCAACAGAGATTAATATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCA--GAT 17665 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || ||||| ||||| || ||| | ||||| || || Sbjct 17666 TACAATATTCAGAAAGAGTCCACTCTTCATCTTGTTCT 17703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476946437178960