Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1267 123 2e-23 seq629 123 2e-23 seq4435 116 3e-21 seq1156 109 5e-19 seq5467 107 2e-18 >seq1267 Length=316221 Score = 123 bits (136), Expect = 2e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 115277 AGATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACG 115336 ||||||| ||||| || ||||| |||||||| || |||||||| || || | ||| | Sbjct 206666 AGATTAAGGATGCAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTG 206607 Query 115337 GAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCC 115396 ||| | || ||||| ||| | | || || |||||| || |||||||| | ||| Sbjct 206606 GAGCCTAGTGACACCATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCC 206547 Query 115397 GTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCC 115456 || || || ||| | |||| ||| || ||||| || || |||| || || | Sbjct 206546 CCAGACCAACAGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCA 206487 Query 115457 GATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||||||||||||||| |||||| | ||| | ||||||||| | || || || Sbjct 206486 GACTATAACATTCAAAAAGAATCTACTCTTCATCTAGTGTTGAGACTCCGTGGGGG 206431 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || || || || |||||||| ||| | ||| || | || Sbjct 205973 ATGCAAATCTTTGTTAAGACTCTGACAGGTAAAACCATCACCCTGGAAGTTGAACCAAGT 205914 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| | | || || |||||| |||||||| || |||| || ||| Sbjct 205913 GACACTATTGAAAATGTGAAGGCTAAAATTCAGGATAAAGAGGGGATCCCTCCAGACCAG 205854 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | |||| ||| ||||| ||| | || |||| | |||| || | ||||||||| Sbjct 205853 CAGAGGTTAATTTTTGCTGGCAAGCAACTGGAGGATGGAAGAACCTTGTCAGATTATAAC 205794 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || ||||| || | || | || ||||||||||| || || Sbjct 205793 ATACAGAAGGAGTCGACCCTCCACTTAGTATTGAGATTGCGTGGTGG 205747 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || || || || ||||| || ||| | ||| || | || Sbjct 206201 ATGCAGATCTTTGTTAAGACTCTGACAGGTAAAACTATCACCCTGGAAGTTGAACCAAGT 206142 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| | | ||||| ||||| |||||||| || |||| || ||| Sbjct 206141 GACACTATTGAAAACGTAAAGGCTAAAATCCAGGATAAAGAGGGGATCCCTCCAGACCAG 206082 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||| | |||| ||| || || || || ||||||| | ||| | | ||||| || Sbjct 206081 CAAAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206022 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||||||| || | || | ||| |||| | ||||||| Sbjct 206021 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 205975 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| || || || |||||||||||| | ||| || |||| Sbjct 206429 ATGCAGATCTTTGTGAAAACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAACCCAGT 206370 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || || || || || |||||||| |||| || ||| Sbjct 206369 GACACAATTGAAAATGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 206310 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | |||| ||| || || || || ||||||| | ||| | | ||||| || Sbjct 206309 CAGAGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAAT 206250 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||||||| || | || | ||| |||| | ||||||| Sbjct 206249 ATTCAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGAGGAGG 206203 >seq629 Length=499154 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || ||||| ||||||||||| || | ||| |||| | || Sbjct 5966 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 6025 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | |||||| ||| || || || |||||| |||| ||| || Sbjct 6026 GACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAA 6085 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||||| || | ||| || |||||| |||| |||| || | | ||||| ||| Sbjct 6086 CAGAGACTGATCTTTGCTGGTAAACAACTAGAGGATGGACGTACACTCTCAGATTACAAC 6145 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 |||||||| ||||||||| | ||| | || || ||| |||| || ||| Sbjct 6146 ATTCAAAAGGAGTCTACTTTGCATCTTGTCTTAAGACTGCGTGGTGGA 6193 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || ||||| ||||||||||| || | ||| |||| | || Sbjct 5738 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGAGCCAAGT 5797 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | |||||| ||| || || || |||||| |||| ||| || Sbjct 5798 GACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAA 5857 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||||| || | ||| || |||||| | || |||| ||| | | || || ||| Sbjct 5858 CAGAGACTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGAACACTTTCTGACTACAAC 5917 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| ||||| ||||| |||| ||| || | ||||| Sbjct 5918 ATCCAAAAAGAATCTACCCTACATCTGGTTCCGAGGCTGAGGGGAGG 5964 >seq4435 Length=89394 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| || || |||||||| ||||| | ||| || |||| Sbjct 36045 ATGCAAATCTTTGTTAAAACACTTACTGGAAAAACAATTACTCTGGAAGTTGAACCCAGT 36104 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | | |||||| |||||| ||||||||||| | || ||||| Sbjct 36105 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAA 36164 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | |||| ||| || ||||| || ||||||| ||| | | |||||||| Sbjct 36165 CAAAGATTGATTTTTGCAGGGAAACAGTTGGAAGATGGTCGCACCTTATCAGATTATAAT 36224 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| || ||||| || | || |||| | || ||||| || || Sbjct 36225 ATTCAGAAGGAGTCCACACTTCACTTGGTACTTAGGTTGCGTGGTGG 36271 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || |||||||| || || || || || || ||| ||||| || |||| Sbjct 36273 ATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGT 36332 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| | | || ||| |||||| ||||||||||| | || || || Sbjct 36333 GACACTATTGAAAATGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGACCAA 36392 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | || | ||| || ||||| |||||||||| | ||| || | ||||||||| Sbjct 36393 CAGAGGTTAATCTTTGCAGGAAAACAGTTAGAAGATGGGAGAACTCTGTCAGATTATAAC 36452 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || ||||||||||| | || | || |||| | ||||||||| Sbjct 36453 ATCCAGAAAGAGTCTACACTTCACTTAGTCCTGAGGCTCAGAGGAGGAA 36501 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || || || || ||||||||||| ||| | || || |||| Sbjct 36500 AATGCAAATTTTTGTTAAGACTCTGACAGGAAAAACCATCACCCTTGAGGTAGAACCCAG 36559 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | | | || ||| || ||| ||||| || || |||| || || Sbjct 36560 TGATACAATCGAAAATGTGAAAGCTAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCA 36619 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||| | |||| ||| || || ||||| ||||||| | |||| || | ||||| || Sbjct 36620 ACAAAGGTTAATTTTTGCTGGGAAGCAATTGGAAGATGGAAGAACCCTGTCAGATTACAA 36679 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| ||||| || || | || |||| ||||| |||| ||||| Sbjct 36680 CATTCAGAAAGAATCAACCCTTCACTTGGTACTGAGACTGCGTGGAGG 36727 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || |||||||| || || || || || || ||| ||||| || |||| Sbjct 32655 ATGCAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGT 32714 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | | || ||| |||||| ||||||||||| | || ||||| Sbjct 32715 GATACTATTGAAAACGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGATCAA 32774 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | |||| ||| || |||||||||||||||| ||| | | |||||||| Sbjct 32775 CAAAGATTGATTTTTGCAGGGAAACAATTAGAAGATGGGCGCACCTTATCAGATTATAAT 32834 Query 115466 ATTCAAAA 115473 ||||| || Sbjct 32835 ATTCAGAA 32842 >seq1156 Length=327524 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115280 TTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG 115339 || |||||||| || ||||| ||||| | || ||||| || |||||| | ||| ||| Sbjct 17486 TTCAAAATGCAGATCTTTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAGAG 17545 Query 115340 TCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 | || |||||| ||| | ||||| |||||| ||||||||||| | ||| | Sbjct 17546 CCTAGTGACACTATTGAGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCCCT 17605 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 ||||| || ||| | || | ||| || || || ||||||||| | ||| | | ||| Sbjct 17606 GATCAACAGAGATTAATATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCAGAT 17665 Query 115460 TATAACATTCAAAAAGAGTCTACTATACAT 115489 || || ||||| |||||||| ||| | ||| Sbjct 17666 TACAATATTCAGAAAGAGTCCACTCTTCAT 17695 >seq5467 Length=66102 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || ||||| |||||||| || || | || ||| | || Sbjct 29819 ATGCAGATTTTTGTCAAGACCCTCACTGGAAAAACTATCACTTTGGAGGTGGAACCAAGT 29760 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | |||||| ||| || || ||||||||| | || ||| || Sbjct 29759 GACACAATTGAGAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCTGACCAA 29700 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||||| |||| ||| || ||||| | || |||| ||| | | |||||||| Sbjct 29699 CAGAGACTGATTTTTGCAGGTAAACAGCTGGAGGATGGACGGACCCTTTCTGATTATAAT 29640 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| ||||| |||||| | ||| | || | ||| |||| || |||| Sbjct 29639 ATTCAGAAAGAATCTACTTTGCATCTTGTCCTAAGACTGCGTGGTGGAA 29591 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| || || || ||||||||||| | ||| || | || Sbjct 30047 ATGCAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTCTGGAAGTAGAACCTAGT 29988 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | |||||| ||||||| || |||||||| | || || ||| Sbjct 29987 GATACTATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAG 29928 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||| |||| ||| || |||||| | || |||| ||| | | || || || Sbjct 29927 CAAAGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGACCCTTTCTGACTACAAT 29868 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| || || ||| | ||| |||| || ||||| ||||||| Sbjct 29867 ATCCAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGAGGAGG 29821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423857299503160