Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1267 111 1e-19 seq4435 96.9 3e-15 seq1156 93.3 4e-14 seq5467 91.5 1e-13 seq1632 91.5 1e-13 >seq1267 Length=316221 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| | || ||||| || | |||||||||||| || ||||| ||||| | Sbjct 205747 CCACCACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGAC 205806 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | ||||| || |||||||| || | ||||| | ||||||||| |||||| Sbjct 205807 AAGGTTCTTCCATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGG 205866 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || ||||| || ||||| ||| | | || | ||| || | | || | Sbjct 205867 ATCCCCTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCAACT 205926 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||||||||| || ||||| || || || || |||||| || Sbjct 205927 TCCAGGGTGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCATGCCT 205977 Score = 111 bits (122), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGT 131080 ||||||||| || | || ||||| |||||||| |||||||| | | | | | | | | Sbjct 206217 CAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTTCTTCCA-T 206275 Query 131081 CCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGT 131140 | || | |||||| ||||| | || || | ||||||||| ||||||||||||||||||| Sbjct 206276 CTTCCAACTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTCCTTCTTTGT 206335 Query 131141 CGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGG 131200 | ||| || ||| | | || | || || ||| || | || | ||||| || Sbjct 206336 CTTGGATCTTAGCCTTCACATTTTCAATTGTGTCACTGGGTTCAACTTCTAGGGTAATGG 206395 Query 131201 TTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||||| || ||||| || || ||||||||| Sbjct 206396 TTTTGCCGGTAAGGGTTTTCACAAAGATCTGCATG 206430 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 || ||||| ||| | || || || ||||||||||| || || || ||||| || Sbjct 206445 CAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGACCATC 206504 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| | ||| || || || | ||||| | ||| ||||| || || |||||||||||||| Sbjct 206505 CTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTC 206564 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||||| ||||| | || | || || | | ||| | || | || | || Sbjct 206565 TTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGTGATAGT 206624 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || ||||| |||||||| || |||||||| Sbjct 206625 TTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 >seq4435 Length=89394 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 ||| ||||| || | || ||||| || || ||||| ||||| || || | | || Sbjct 36485 CAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGACAGAGTTCTCCCATC 36426 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 |||| ||| || ||||| ||||||| | ||| ||||| || || ||||||||||| || Sbjct 36425 TTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTGGAATTCCTTCTTTATC 36366 Query 131142 GGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGG 131200 |||||| ||| || | | || | ||| || ||| || | |||| ||| | | Sbjct 36365 CTGGATTTT-TGCTTTCACATTTTCAATAGTGTCACTGGGTTCAACTTCGAGGGTTATAG 36307 Query 131201 TTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 | || || || |||||||| ||||| ||||||||| Sbjct 36306 TCTTGCCTGTAAGAGTTTTGACGAAGATCTGCATG 36272 >seq1156 Length=327524 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| || || | ||| | || ||||| || ||||| |||||||| | | Sbjct 17718 CCACCACGTAGACGTAGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGAT 17659 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || | | | || ||||||||||| ||||| | ||||| | ||| || || || || Sbjct 17658 AGTGTTCTTCCA-TCTTCTAGCTGCTTTCCTGCAAATATTAATCTCTGTTGATCAGGGGG 17600 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||||| || |||||| ||| | | ||| | ||| || | | ||| | Sbjct 17599 AATTCCTTCTTTATCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTAC 17540 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || || | |||||||| || |||||||| Sbjct 17539 TTCTAAGGTAATAGTCTTTCCTGTCAAGGTTTTTACAAAGATCTGCAT 17492 >seq5467 Length=66102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| ||||| || | ||| | || || |||||||| || ||||| || Sbjct 29821 CCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAA 29880 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || || || ||||| | || | | |||||||| || || Sbjct 29881 AGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGA 29940 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| ||| || | | ||| | |||||| | | || | Sbjct 29941 ATACCTTCTTTGTC-TTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTAC 29999 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| |||||| || ||||| ||||| || || ||||||||| Sbjct 30000 TTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCATG 30048 >seq1632 Length=265768 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/121 (78%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 145667 CTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGA 145726 ||||| | ||| ||||| | || || || ||||||||||||||||| || || ||||| Sbjct 23373 CTGTACTCTACAATCTCTGTACATAAGTTACTACATTTGATGGTTCCAAGGTTCTGCTGG 23432 Query 145727 TT--ACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCT 145784 || ||||| ||||| || || || |||||||||||||| ||| ||||| || |||| Sbjct 23433 TTTGACTTT--CTGTTACAGGCATCTTTGTAGAGCATGTATGGTGTCCCAGTTTCAACCT 23490 Query 145785 G 145785 | Sbjct 23491 G 23491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470320675413120