Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03]
286,793 sequences; 1,828,271,751 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq1267 118 9e-22
seq629 113 4e-20
seq4435 107 2e-18
seq5467 84.2 2e-11
>seq1267
Length=316221
Score = 118 bits (130), Expect = 9e-22
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 16721 CTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCG 16780
|||| ||| | || || || |||||||| |||||||| || || | || |||| | |
Sbjct 205759 CTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGACAAGGTTCTTCCA 205818
Query 16781 TCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTG 16840
||||||| ||| ||||| ||| |||| | || ||| ||||| ||| | ||||||||
Sbjct 205819 TCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGGATCCCCTCTTTA 205878
Query 16841 TCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| ||||| |||||| | | | |||||| | || || ||||| |||||||
Sbjct 205879 TCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCAACTTCCAGGGTGATG 205938
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| || ||||| || || ||||| || |||||
Sbjct 205939 GTTTTACCTGTCAGAGTCTTAACAAAGATTTGCAT 205973
>seq629
Length=499154
Score = 113 bits (124), Expect = 4e-20
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
|||||| | |||||| | |||| ||| || || || || ||||| ||||||||||| |
Sbjct 5965 CCCTCCCCTCAGCCTCGGAACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGA 5906
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
| ||| | ||||||| |||||| || ||| | || || | ||||||||| ||
Sbjct 5905 AAGTGTTCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGG 5846
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| ||| || ||||| || |||||| || || | | | ||||| | ||||||
Sbjct 5845 GATGCCTTCCTTGTCTTGGATCTTTGCT--TTTACATTCTCTATTGTGTCACTTGGCTCC 5788
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| |||||||||||||| || || || || |||||||| |||||
Sbjct 5787 ACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5738
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || || | || | ||||| || ||||||||||| |||||||| || |
Sbjct 6192 CCACCACGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAG 6133
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | ||||| | |||||| || ||| | || || | ||||||||| ||
Sbjct 6132 AGTGTACGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGG 6073
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||| || ||||| || |||||| || || | | | ||||| | ||||||
Sbjct 6072 ATGCCTTCCTTGTCTTGGATCTTTGCT--TTTACATTCTCTATTGTGTCACTTGGCTCCA 6015
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| |||||||||||||| || || || || |||||||| |||||
Sbjct 6014 CTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966
>seq4435
Length=89394
Score = 107 bits (118), Expect = 2e-18
Identities = 163/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || |||||||||| || || || || || || || |||||||| || | |
Sbjct 36727 CCTCCACGCAGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGAC 36668
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| |||| | | || |||||||| || || ||| |||| | || |||||||| |||
Sbjct 36667 AGGGTTCTTCCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGG 36608
Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| || || ||| | ||| ||||| | | | || || | ||| ||
Sbjct 36607 ATTCCCTCCTTATCTTGAATCTTAGCT--TTCACATTTTCGATTGTATCACTGGGTTCTA 36550
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| | ||||||||||||||| ||||| || || |||||||| ||||||
Sbjct 36549 CCTCAAGGGTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500
>seq5467
Length=66102
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || || || || | ||||| || || || || || || || || || |
Sbjct 29593 CCACCACGCAGTCTTAGGACAAGATGCAAAGTAGATTCTTTCTGAATATTATAATCAGAA 29652
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | ||||||| ||||| || ||| |||| || | ||||||||| ||
Sbjct 29653 AGGGTCCGTCCATCCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGTCAGGTGGA 29712
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||| |||||||| || |||||| || || | | | ||||| | || |||
Sbjct 29713 ATGCCTTCTTTGTCTTGGATCTTTGCT--TTTACATTCTCAATTGTGTCACTTGGTTCCA 29770
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||| |||||||| || || || |||||||||||||||||
Sbjct 29771 CCTCCAAAGTGATAGTTTTTCCAGTGAGGGTCTTGACAAAAATCTGCAT 29819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 403672100091070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |