Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6658 149 8e-31 seq3845 136 5e-27 seq994 134 2e-26 seq5418 132 6e-26 seq1632 114 2e-20 >seq6658 Length=47451 Score = 149 bits (164), Expect = 8e-31 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 33055 TCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT 33114 |||||||||| ||||| || ||||| || ||||| || || |||||||| | | |||| | Sbjct 26438 TCACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAAAGTGTCTTTCTT 26497 Query 33115 CTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCC 33174 | ||| ||| || |||||||| || |||||||| | ||||||||||| | |||| Sbjct 26498 CAGGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTTCTTCAGCAGTCC 26557 Query 33175 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAA 33234 | || || |||||||| || || ||||||| ||| || || | || | |||||| |||| Sbjct 26558 AGAAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACTCAATTGGTAAAA 26617 Query 33235 TAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 33271 | ||||||| ||| ||||||| || | | |||| Sbjct 26618 TTACAAATCGTCCTGGGTTTTTTGTCAGAAGTAGTTC 26654 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || || ||||| ||||| ||||| ||||| |||||||| ||||| ||||| || | || Sbjct 25523 TCCTTCACATAAGTATCTATCAAGAGACTGTACATTTCAGAATGTATGTTCTCCACTGCA 25582 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 || ||||| | |||||| || | ||| ||||||||||| || || ||| |||||| || Sbjct 25583 ATCTGAAAGCTGTAGAAACAACGAGCTTCGGTAATCTGGACCTCCTGACAGAATCGTGCT 25642 >seq3845 Length=110360 Score = 136 bits (150), Expect = 5e-27 Identities = 168/227 (74%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | ||| || || || | || ||||| || || | ||| | Sbjct 72985 CCTCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCT 72926 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 ||||||| ||||| || |||||||| ||||||||||| || || || || || ||||||| Sbjct 72925 TAAGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGG 72866 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGT--CATG---TATCCACTTTTGAGCCCAATC 32857 | | || || ||| ||| || | ||||| ||| |||||| || |||||||||| Sbjct 72865 CTACAACTCGCTCACCAAAA--GTAGCTGTAGGATGACCTATCCAGTTGAGAGCCCAATC 72808 Query 32858 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 32904 || ||||| || |||||||||| || || || ||||| || |||| Sbjct 72807 TGCTTTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGAT 72761 Score = 129 bits (142), Expect = 7e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33047 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33106 ||||||||| || || || ||||| || ||||| || |||| | || ||||| | Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976 Query 33107 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 33166 || ||| ||| | ||| || | ||| | | | ||||| || | ||| |||||||| Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTC 70916 Query 33167 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 33226 || ||||| ||||| |||||||| || |||||||| | ||||||||| | |||| ||| Sbjct 70915 TACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAAT 70856 Query 33227 TGGAAAAATAACAAATCTATTTGGATTTT 33255 ||||||||||||||||| ||||||| Sbjct 70855 GGGAAAAATAACAAATCTCCGAGGATTTT 70827 >seq994 Length=361151 Score = 134 bits (148), Expect = 2e-26 Identities = 319/472 (68%), Gaps = 29/472 (6%) Strand=Plus/Minus Query 155747 TACGAACCGGGAAAGAGAAGATGGTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCC 155806 || || || ||||| || ||| ||||||| || ||| || | | || || | Sbjct 158601 TATGAGCCAGGAAAACGACATTGGCTAAAAATTAAAAAAGATTACCTAGAAGATGGAGCA 158542 Query 155807 ATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCTTACTATGGTAAAGGAGCAAAGGGT 155866 ||||||||||| || ||| | || || || || || || | ||| | ||| || ||| Sbjct 158541 ATGGCAGATTCAGCTGATCTTGTTGTTCTTGGAGCATATTTTGGAACTGGAAATAAAGGT 158482 Query 155867 GGTATTATGGCAGTCTTTCTAATGGGTTGTTACGATGATGAATCCGGTAAA---TGGAAG 155923 || || ||| || | ||||| ||||| ||||||||| || | ||||| ||| Sbjct 158481 GGAATGATGTCAATATTTCTGATGGGATGTTACGATCCTG---CTAGTAAAAAATGGTGT 158425 Query 155924 ACGGTAACTAAA-TG--TTCAGGACACGATGATAATACGTTAAGGGTTTTGCAAGAC--C 155978 || || || ||| || | |||||| |||||| ||| ||||| || || | Sbjct 158424 ACTGTTACAAAAGTGCATGGAGGACATGATGATGCTAC--------TTTTGAAAAACTCC 158373 Query 155979 AA--TTAACG----ATGGTTAAAATTAACAAGGATCCCaaaaaaaTTCCAGAGTGGTTGG 156032 || | | | ||| ||||||| ||||| || | ||| |||| | ||| || Sbjct 158372 AAACTGAGCTGGACATGAAAAAAATTAGGAAGGACCCAAGTAAAGTTCCTGCTTGGCTGA 158313 Query 156033 TAGTTAATAAAATCTAT-ATTCCCGATTTTGTAGTAGAGGATCCGAAACAATCTCAAATA 156091 ||| ||||||| || | ||||| |||||||| | | ||||| ||| | || | | || Sbjct 158312 AAGTGAATAAAA-CTCTCATTCCTGATTTTGTTGCTAATGATCCTAAAAACTCCCCAGTA 158254 Query 156092 TGGGAAATTTCAGGAGCAGAGTTTACACCTTC-CAAGTCACATACAGCGAATGGAATATC 156150 ||||||||| |||||||| |||||| | || || |||||||| |||||||| || Sbjct 158253 TGGGAAATTGTTGGAGCAGAATTTACAAAAGCAGAAATC-CATACAGCCAATGGAATCTC 158195 Query 156151 GATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAACGTGGAAAGAA 156202 ||| | ||||| ||| || | | || |||| || ||||| ||||||||| Sbjct 158194 TATTCGTTTTCCAAGAGTTGCAAAAATCCGAGATGACAAAACATGGAAAGAA 158143 Score = 93.3 bits (102), Expect = 5e-14 Identities = 237/360 (66%), Gaps = 3/360 (1%) Strand=Plus/Minus Query 155201 CCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATTTAAAAAATTTCCATCAGGA 155260 ||||||||||| ||| | || |||||| | | || || || ||||||||| ||| Sbjct 159150 CCCATGTTAGCTGAACCTTGCAGTTCTGTGGAATATGCCTTCAAGAAATTTCCAAGTGGA 159091 Query 155261 ATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGTTCATAAAAATAATAACGAG 155320 |||| ||||||| | || || ||||| || || ||||| || || ||| || || | Sbjct 159090 ATGTATGCTGAAATAAAGTATGATGGTGAAAGGGTACAGGTCCACAAACATGGAGACAAA 159031 Query 155321 TTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTTATAAAGTGGATTATCTCAAA 155380 ||| | |||||| ||| | ||||| || | || | ||| | |||| ||| Sbjct 159030 TTTAATTATTTTAGTCGAAGTTTAAAACCCGTGATGCCTCACAAAATTTCACATCTGAAA 158971 Query 155381 GAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTGGATTCTGAAATTGTT 155440 ||||||||||| ||||| ||| |||||| | | || | ||| |||| | | Sbjct 158970 GAATACATACCTAAAGCTTTTCCTCAAGCTAGTGATTTGATACTTGATAGTGAAGTACTA 158911 Query 155441 CTTGTAGACGAACATAATG---TACCGCTCCCGTTTGGAAGTTTAGGTATACACAAAAAG 155497 ||||||||| || | || || || || ||||||| ||||| | || ||||| Sbjct 158910 CTTGTAGACACTCAAACTGGGAAGCCACTTCCATTTGGAACATTAGGAGTTCATAAAAAA 158851 Query 155498 AAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTGTTTGTACTTTGATGGA 155557 | | || | | | |||||||||| || |||||||| | ||| | ||||| Sbjct 158850 GCTGCTTTCAAGGATGCAAGTGTGTGTTTGTTTGTCTTTGACTGCATTCACTATAATGGA 158791 >seq5418 Length=65370 Score = 132 bits (146), Expect = 6e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 33048 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33107 |||||||| ||||| || ||||| || ||||| || ||||| ||||| ||||| | | Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860 Query 33108 TTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 33167 |||| || | ||| | | ||| |||| | ||| || |||| || |||||||| Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800 Query 33168 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATT 33227 ||||||||||||| ||||||||| | || ||||| | ||||||||| | |||| ||| Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740 Query 33228 GGAAAAATAACAAATCTATTTGGATTTT 33255 ||||| || ||||| || | || |||| Sbjct 6739 GGAAACATTACAAACCTTCTAGGGTTTT 6712 Score = 129 bits (142), Expect = 7e-25 Identities = 165/225 (73%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | || || ||| ||||| || ||||| ||||||||||||| Sbjct 8159 CCTCATCTCTGCTGATCAGCTCATTACTAAAAGTGAGACCAGGCATCAGGCCACGCTTTT 8100 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || || || ||||| || ||||| || || ||||||||||| || ||||| | Sbjct 8099 TTAGCCAGAAAATTGAAGCAAAAGACCCAGAGAAAAATATTCCTTCTACAGCAGCAAAAG 8040 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGT--CATG---TATCCACTTTTGAGCCCAATC 32857 | | || || ||| || || | ||||| ||| ||||| | ||||||| || Sbjct 8039 CCACAACTCGCTCACC--AAATGTTGCTGTAGGATGGCTAATCCAAGTGAGAGCCCAGTC 7982 Query 32858 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 || ||||| |||||||| |||| ||||| || ||||| || || Sbjct 7981 TGCTTTCTTCTTTACACATGGCAAGGTCTCAATTGCATTGAAAAG 7937 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 32495 ATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 32554 ||| || ||||||||||| ||| |||||||| || ||||||||| || || | || Sbjct 8822 ATCAGCAACAAATTCTATGTATTGTTTCATCAATTGACAATTCATACCAATCAAAGCCAC 8763 Query 32555 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCT 32614 ||| | ||| |||| | ||||||||||||||| || || ||| | ||||| Sbjct 8762 TGGTAAAGCATCAGTTAAAAATTCTTGTTCAATTTTCACAGCTTCTTTAATAATCTCCAC 8703 Query 32615 TACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCA 32674 |||| | || | ||| || | | ||| |||||| ||| || || ||||| || Sbjct 8702 TACTCTCTCCTTGGATGGTTTATTGACAAGATGACTAAACAGCAAGCAGGCAAAATCACA 8643 Query 32675 GTGTAGACCCT 32685 ||||||||||| Sbjct 8642 GTGTAGACCCT 8632 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 32911 TTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 32970 ||||||| ||| || | || || ||||| || | |||||||||||| || |||| | Sbjct 7532 TTTCATTTGGATCCTTGATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACAT 7473 Query 32971 TTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 |||||||||| ||||| || || || || || ||||| ||||| | ||| ||||| Sbjct 7472 TTTCAATGGCAATTTGGAAACCATAAAAACACCTAGCTTCGGTTACCTGCACTTC 7418 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/139 (73%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTT 32370 ||||||| ||| | || |||| ||| | || ||||| || || ||| ||||| | Sbjct 9216 TTTAAAAATCAGCGTCAAGAGTAAACTTATGCTCTTCCCGTTTAGCCATGACTCCACACT 9157 Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 | || ||||||||||| ||||| || || || || || ||||| || || |||| || Sbjct 9156 TCTGATATTCACCCACTTTCTTTTCAAAGAAGTTGGTCTTGCCTTCCAAAGAAATATGTT 9097 Query 32431 CCATGAAATCGAATGGATT 32449 |||| ||||| |||||||| Sbjct 9096 CCATAAAATCAAATGGATT 9078 >seq1632 Length=265768 Score = 114 bits (126), Expect = 2e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491 ||||| || ||||| || |||||||| || |||||| || ||||||| || || ||| Sbjct 21155 TATGTTTCATATGGCCCCAACTTCTCAGATAATTCACAGCTTGCCTCTACAGCTCCATAA 21214 Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 ||||| || || || |||| | ||||| ||| ||||| || |||||||||||| Sbjct 21215 TAAATAGTCTCAAAAATCTGAATGTTTAGTAGTTGGGCTTCTTTACTGTCAAATGGATAA 21274 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 | ||||| || || ||||||| || ||||||||||| || || |||| |||| | Sbjct 21275 CGCATAAGAATGAAGGCATCTGCTAGCCCCTGAACACCAATGCCAATTGGTCGATGTTTT 21334 Query 62612 TTATTAGA 62619 || || || Sbjct 21335 TTGTTTGA 21342 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 62184 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62243 ||||| |||||||||||| || || | || | || | ||| ||||| || || || | Sbjct 18440 GATTACTTACTTGAAATTCACCTGAGAGGACACGACGGGAGTATATATTGCTTGTGTAAG 18499 Query 62244 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 |||| | ||||||||| ||||| | ||| || |||||||| ||||| ||||||||||| | Sbjct 18500 GTTCAATAGACTCATTGTTTCCAAGAATCTGGGCAGTTGAAGCAGTTGGCATAGGTGCAA 18559 Query 62304 CCAATAAACTATTTCT 62319 | ||| || ||||| Sbjct 18560 TGAGTAAGCTGTTTCT 18575 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||| || || | |||||||| ||||||||||| | || || || || |||| || Sbjct 23385 ATCTCTGTACATAAGTTACTACATTTGATGGTTCCAAGGTTCTGCTGGTTTGACTTTCTG 23444 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 ||||| ||||| || || || ||| |||| || |||||||||| ||||| ||||| ||| Sbjct 23445 TTACAGGCATCTTTGTAGAGCATGTATGGTGTCCCAGTTTCAACCTGAGCTTCTAAAATT 23504 Query 62921 GCTTTCCA 62928 || | ||| Sbjct 23505 GCATACCA 23512 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || |||||||| || || ||||| |||| | || || ||||| || |||| Sbjct 17145 TCCACCCATAGAAATGCATGCTGGTCAGTTTTCCATAATTGGGGTCAGCTATGTGAATAT 17204 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| ||||| ||||| || || ||||| | ||| || |||| || || || | Sbjct 17205 TCAGAGACTGACTCTGATCAATAAATGCTCCTCGGTCAGCTCCCATCTTGATGATAAGCC 17264 Query 62037 TTTGTGGAATTTCCCAAATAGTT 62059 ||| ||||||||||| | |||| Sbjct 17265 GTTGGGGAATTTCCCACACAGTT 17287 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||||||| ||||| ||||||||||||| || || || || || | ||| || || | Sbjct 50439 CACTAAATGTCTTTTTAGTTTCTTTGTGTAAGTTGGAGACAGCAATGCGAGCAGCAAGGA 50498 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 |||||||| ||||||| || || || || || |||| ||||| | |||| | Sbjct 50499 GAGCATAATCTGGATGTTTAGTTGTCATGGTTGCAGCAGTTTCTGCTGCTAAGTTGTCAA 50558 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAG 63977 ||| || || ||||||||| ||||| || | ||| ||||||| || Sbjct 50559 GTTCAACTGTCGTTACACCAGGATATAAGCCATTGATGACCTTCAAAG 50606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631360484722800